Bibliography

Primary Sources
Abelard, P. 1956. Dialectica. Ed. L.M. De Rijk. Assen: Van Gorcum.
Aphrodisiensis, Alexandri. 1892. Praeter Commentaria Scripta Minor. Quaestiones
De Fato, De Mixtione. Ed. I. Bruns. Berolini: Reimer.
Aquinas, St. Thomas. 1923. Summa Contra Gentiles. Trans. and ed. English Domin-
ican Fathers. London: Burns, Oates and Washbourne.
Aquinas, St. Thomas. 1947. Compendium Theologiae. Trans. and ed. S.J. Cyril Vollert.
St Louis and London: B. Herder Book Co.
Aquinas, St. Thomas. 1949. Quaestiones Disputatae de Anima, translated as The Soul
by John Patrick Rowan. London: B. Herder.
Aquinas, St. Thomas. 1963. Tractatus de substantiis separatis. Ed. F.J. Lescoe. West
Hartford: Saint Joseph College.
Aquinas, St. Thomas. 1966. De ente et essentia. Ed. Boyer. Rome.
Aquinas, St. Thomas. 1968. Summa Theologiae. I. London: Blackfriars and Eyre and
Spottiswood.
Aquinas, St. Thomas. 1983(a). On Being and Essence. Trans. Armand Maurer.
Toronto: Pontifical Institute of Medieval Studies.
Aquinas, St. Thomas. 1983(b). Quodlibetal Questions 1 And 2. Trans. and ed.
S. Edwards. Toronto: Pontifical Institute of Mediaeval Studies.
Aristotle. 1984. The Complete Works of Aristotle, vols. I–II. Ed. Jonathan Barnes.
Princeton: Princeton University Press.
Avicebron. 1892–95. Fons Vitae Ex Arabico in Latinum. Translatus ab Iohanne
Hispano Et Dominico Gundissalino. Ed. C. Baeumker. Muenster: Aschendorff.
Bacon, Frncis. The New Organon. Eds. L, Jardine and M. Silverthorne. Cambridge:
Cambridge University Press.
Baillet, A. 1691. La Vie de M. Descartes. Paris.
Boaistuau, Pierre. 1569. Certaine secrete wonders of nature, containing a description
of sundry strange things seming monstrous in our eyes and judgement because we
are not privy to the reason of them. Trans. E Fenton. London: Henry Bynneman.
Boyle, Robert. 1772. The Works of the Honorable Robert Boyle. London.
Caus, S. de. 1615. Les raisons des forces mouvantes, avec diverses machines tant utiles
que plaisantes. Aus quelles sont adioints plusieurs desseins de grotes et fontaines.
Frankfurt: Jan Norton.
Cavendish, Margaret. 1653. Philosophical fancies. London: Roycroft.
Cavendish, Margaret. 1655. The philosophical and physical opinions. London.
Cavendish, Margaret. 1664. Philosophical letters: or modest reflections upon some
opinions in natural philosophy. London.
236 

Cavendish, Margaret. 1668. Observations upon experimental philosophy. London:

A. Maxwell.
Charleton, Walter. 1680. Enquiries into human nature in VI. Anatomic Praelections.
London: M. White.
Conway, Anne. 1692. The principles of the most ancient and modern philosophy.
Printed in Latin, Amsterdam: M Brown, 1690. Reprinted 1692. Translated out of
English into Latin and now made English again by J.C. Medicinae Professor.
Cudworth, Ralph. 1837–38. The True Intellectual System of the Universe. 2 vols. Ed.
Thomas Birch. Andover: Gould & Newman.
Descartes, R. 1984–91. The Philosophical Writings of Descartes, J. Cottingham,
R. Stoothoff, and D. Murdoch, eds., vols. 1–2 (“CSM”) and J. Cottingham,
R. Stoothoff, D. Murdoch, and A. Kenny eds., vol. 3, (“CSMK”), Cambridge:
Cambridge University Press.
Descartes, R. 1897–1913/1996. Oeuvres de Descartes, 12 vols. Ed. Charles Adam and
Paul Tannery. Paris: J. Vrin.
Denzinger, H. 1856. Enchiridion Symbolorum. Definitionum et declarationem de
rebus fidei et morum. Wurzburg: Stahelianus.
Digby, Sir K. 1644/1658. Two treatises: in the one of which, the nature of bodies; in the
other, the nature of man’s soule, is looked into: in way of discovery of the immor-
tality of reasonable soules. London.
Digby, Sir K. 1658. A late discourse made in solemne assembly of nobles and learned
men at Montpellier in France, touching the cure of wounds by the powder of
sympathy. London: R. Lowdes, 2nd edition.
Galen, C. 1821–33. Opera Omnia. Ed. C.G. Kühn. Lipsiae: C. Cnobloch.
Harvey, W. 1653. Exercitationes. Published in English as Anatomical Exercitations
London: James Young.
Highmore, N. 1651. The history of generation. London.
Hobbes, T. 1682. An Answer to Arch-bishop Bramhall’s Book Called the Catching of
the Leviathan. In Tracts of Mr Thomas Hobbs of Malmsbury. London.
Hobbes, T. 1962. De Corpore (DC) The English Works of Thomas Hobbes of Malmes-
bury. Ed. Sir Thomas Molesworth. Aalen, Germany: Scientia.
Hobbes, T. 1962. Elements of Law, (EL), The English Works of Thomas Hobbes of
Malmesbury. Ed. Sir Thomas Molesworth. Aalen, Germany: Scientia.
Hobbes, T. 1962. Elements of Philosophy (EP) from The English Works of Thomas
Hobbes of Malmesbury. Ed. Sir Thomas Molesworth. Aalen, Germany: Scientia.
Hobbes, T. 1651. Leviathan. London: Andrew Crooke.
Hobbes, T. 1968. Leviathan (L). Ed. C.B. Macpherson. Harmondsworth: Penguin.
Hobbes, T. 1996. Leviathan. Ed R. Tuck. Cambridge: Cambridge University Press.
Hobbes, T. 1976. Thomas White’s “De Mundo” Examined, (DME). Trans. and ed.
H. Whitmore Jones. Bradford University (first published in Latin by Jacquot and
Jones, 1973, Paris: J. Vrin)
Hobbes, T. 1978. On Man. Man and Citizen. Trans. and ed. C.T. Wood, T.S.K. Scott-
Craig, and B. Gert. Indianapolis, IN: Hackett: 33–87.
La Forge, L. de. 1997. Treatise on the Human Mind. Trans. Desmond M. Clarke.
Dordrecht: Springer.
La Mettrie, J.O. de. 1748. L’Homme Machine. Paris.
  237

Leibniz, G. von W. 1989. Philosophical Essays. Trans and ed. D. Garber and R. Ariew.
Indianapolis, IN: Hackett.
Locke, J. 1975. An Essay Concerning Human Understanding. P.H. Nidditch, ed.
Oxford: Clarendon Press.
Malebranche, N. 1997. The Search After Truth. Trans. and ed. T.M. Lennon and
P.J. Olscamp. Cambridge: Cambridge University Press.
More, H. 1712. A collection of several philosophical writings. London: Joseph Downing.
Ockham, W. 1984. Opera Philosophica, vi. St Bonaventure, NY: The Franciscan
Institute of St Bonaventure University.
Ockham, W. 1984. Quaestiones variae. Ed. J.C. Wey, G.J. Etzkorn, and F.E. Kelley.
St Bonaventure, NY: St Bonaventure University Press.
Peter of Spain. 1972. Tractatus. Ed. L.M. de Rijk. Assen: van Gorcum & Co.
Plutarch. 1957. De Sollertia Animalium. Loeb Classical Library, vol. 12. Cambridge,
MA: Harvard University Press.
Plutarch. 2004. Life of Alexander. Trans. John Dryden. New York: Random House.
Poisson, N.J. 1670. Commentaire ou remarques sur la méthod de René Descartes. par
L.P.N.I.P.P.D.L., Vandosme, S. Hyp.
Porphyry. 1823. On Abstinence from Animal Food in Select Works of Porphyry. Trans.
T. Taylor. London: For Thomas Rodd.
Reuleaux, F. 1876. The Kinematics of Machinery. Trans. A Kennedy. New York, NY:
MacMillan.
Scotus, J. Duns. 1639. Opera Omnia. Ed. Luke Wadding. Lyons, 12 vols., revised and
enlarged by L. Vives (1891–1895). Paris, 26 vols.
Scotus, J. Duns. 1950–2013. Opera Omnia. (“The Vatican edition”) Civitas Vaticana:
Typis Polyglottis Vaticanis. The Ordinatio (vols. I–XIV) and Lectura (vols. XVI–21).
Scotus, J. Duns. 1963. Cuestiones Cuodlibetales. In Obras del Doctor Sutil, Juan Duns
Escoto, ed. Felix Alluntis. Madrid: Biblioteca de Autores Cristianos.
Scotus, J. Duns. 1981. John Duns Scotus: God and Creatures. The Quodlibetal Questions.
Trans. Allan Wolter and Felix Alluntis. Washington: Catholic University of America
Press.
Scotus, J. Duns. 1987. Philosophical Writings. Trans. and ed. Allan Wolter. Indianapolis:
Hackett.
Shelley, M. 2002. Frankenstein. Troll Communications.
Stoker, B. 1897. Dracula. New York, NY: Random House.
Suárez, F. 1856–1878. Opera Omnia. Ed. M. André and C. Berton. 28 vols. Paris:
Ludovicus Vivès.
Suárez, F. 1856. De Angelis. In Opera Omnia. Vives.
Suárez, F. 1861. Disputationes Metaphysicae. In Opera Omnia, v.25. Vives.
Swift, J. 1733/1910. On Poetry: A Rhapsody. The Poems of Jonathan Swift, vol.1, ed.
William Ernst Browning. London: G. Bell & Sons.

Secondary Sources
Ablondi, F. 1998. Automata, Living and Non-Living: Descartes’ Mechanical Biology
and His Criteria for Life. Biology and Philosophy 13: 179–86.
238 

Aiton, E.J. 1972. The Vortex Theory of Planetary Motion. London: MacDonald and
New York, NY: Elsevier.
Alanen, L. 1982. Descartes on the Essence of Mind and the Real Distinction between
Mind and Body. Studies in Cartesian Epistemology and Philosophy of Mind. Acta
Philosophica Fennica 33: 9–103.
Alanen, L. 1986. On Descartes’s Argument for Dualism. In Simo Knuuttila and Jaako
Hintikka, eds., The Logic of Being: Historical Studies. Synthese Historical Library,
28. Dordrecht and Boston: Reidel: 223–48.
Alanen, L. 1989. Descartes’s Dualism and the Philosophy of Mind. Revue de Méta-
physique et de Morale 3: 319–414.
Alanen, L. 1996. Reconsidering Descartes’s Notion of Mind-Body Union. Synthese
106.1: 3–20.
Alanen, L. 2003. Descartes’s Concept of Mind. Cambridge, MA: Harvard University Press.
Alanen, L. 2008(a). Descartes’ Mind-body Composites, Psychology and Naturalism.
Inquiry 51.5: 464–84.
Alanen, L. 2008(b). Cartesian Scientia and the Human Soul. Vivarium 46: 418–42.
Alanen, L. 2013. The Role of Will in Descartes’ Account of Judgment. In Karen
Detlefsen, ed. Descartes’ Meditations: a critical guide. Cambridge University Press:
176–99.
Ariew, R. 1983. Mind-body interaction in Cartesian philosophy: A reply to Garber.
Southern Journal of Philosophy 21 supp: 33–7.
Ariew, R. 2011. Descartes and the Last Scholastics. 2nd edition. Leiden: E.J. Brill.
Auffray, C. and Noble, D. 2008. Origins of Systems Biology in William Harvey’s
Masterpiece on the Movements of the Heart and the Blood in Animals. Inter-
national Journal of Molecular Science 10.4: 1658–69.
Auffray, C. et al. 2003. From functional genomics to systems biology: concepts and
practices. C R Biol 326.10–11: 879–92.
Ayers, M. 2005. The Second Meditation and Objections to Cartesian Dualism. In
C. Mercer and E. O’Neill, eds. Early Modern Philosophy: Mind, Matter, and
Metaphysics. Oxford University Press: 24–42.
Baigrie, B. 2002. The New Science: Kepler, Galileo, and Mersenne. In S. Nadler, ed. A
Companion to Early Modern Philosophy. Oxford: Blackwell: 45–59.
Baker, L.R. 1997. Why Constitution is Not Identity. Journal of Philosophy 94:
599–621.
Baker, L.R. 2007. The Metaphysics of Everyday Life. Cambridge University Press.
Bertalanffy, Ludwig Von. 1950. The Theory of Open Systems in Physics and Biology.
Science 111.2872: 23–9.
Bertalanffy, Ludwig Von. 1951. Problems of General Systems Theory. Human
Biology 23. 4: 302–12.
Bertalanffy, Ludwig Von. 1968. General System Theory: Foundations, Development,
Applications. First edition. George Braziller Inc.
Bertalanffy, Ludwig Von. 1972. The History and Status of General Systems Theory.
The Academy of Management Journal 15.4: 407–26.
Bertalanffy, Ludwig Von. 2008. An Outline of General System Theory. Emergence:
Complexity and Organization 10.2: 103–23.
  239

Bertolacci, A. 2006. The Reception of Aristotle’s Metaphysics in Avicenna’s Kitāb al-

Šifā’. A Milestone of Western Metaphysical Thought, Islamic Philosophy, Theology
and Science. Texts and Studies 63. Leiden: E.J. Brill.
Bigelow, J. and Pargetter, R. 1987. Functions. Journal of Philosophy 84.4: 181–97.
Bitbol-Hespériès, A. 1990. Le Principe de Vie Chez Descartes. Paris: J. Vrin.
Bitbol-Hespériès, A. 2000. Cartesian physiology. In S. Gaukroger, J. Schuster, and
J. Sutton, eds. Descartes’ Natural Philosophy. London: Routledge: 349–82.
Blank, A. 2007. Composite Substance, Common Notions and Kenelm Digby’s
Theory of Animal Generation. Science in Context 20.1: 1–20.
Boros, G. 2003. Love as a Guiding Principle of Descartes’s Late Philosophy. History of
Philosophy Quarterly 20. 2: 149–63.
Bosley, R. and Tweedale, M. 2006. Basic Issues in Medieval Philosophy. 2nd ed.
Peterborough, Canada: Broadview Press.
Broughton, J. and Carriero, J. eds. 2008. A Companion to Descartes. Oxford: Blackwell.
Broughton, J. and Mattern, R. 1978. Reinterpreting Descartes on the notion of the
union of mind and body. Journal of the History of Philosophy 16.1: 23–32.
Brower, J. 2015. Medieval Theories of Relation https://plato.stanford.edu/en
tries/relations-medieval/ (accessed August 10, 2018).
Brown, D. 2006. Descartes and the Passionate Mind. Cambridge: Cambridge Uni-
versity Press.
Brown, D. 2007. Is Descartes’ body a mode of mind? In Henrik Lagerlund and Mikko
Yrjonsuuri, eds. Forming the Mind. Springer.
Brown, D. 2008. Descartes on True and False Ideas. In Janet Broughton and John
Carriero, eds. The Blackwell Companion to Descartes. Oxford: Blackwell: 196–215.
Brown, D. 2011. The Duck’s Leg: Descartes’s Intermediate Distinction. Midwest
Studies in Philosophy 35: 26–45.
Brown, D. 2012. Cartesian functional analysis. Australasian Journal of Philosophy.
90.1: 75–92.
Brown, D. 2014. The Sixth Meditation: Descartes and the Embodied Self. In David
Cunning, ed. The Cambridge Companion to Descartes’ Meditations. Cambridge
University Press: 240–57.
Brown, D. 2015. Animal Automatism and Machine Intelligence. Res Philosophica
92.1: 1–23.
Brown, D. 2018. Animal Souls and Beast Machines: Descartes’ Mechanical Biology.
In Peter Adamson and G. Fay Edwards, eds. Animals. Oxford Philosophical
Concepts Series. Oxford: Oxford University Press: 187–209.
Brown, D. forthcoming. Agency, Force and Inertia in Descartes and Hobbes. In Ben
Hill, Henrik Lagerlund, and Stathis Psillos, eds. Causal Powers. Oxford University
Press.
Brown, D. and Normore, C. 2003. Traces of the body: Descartes on the passions of
the soul. In B. Williston and A. Gombay, eds. Essays on Passions and Virtue in
Descartes. Humanities Press.
Brown, D. and Normore C. 2014. On bits and pieces in the history of philosophy. In
A.J. Cotnoir and Donald L.M. Baxter, eds. Composition as identity. Oxford
University Press: 24–43.
240 

Brown, G. 1980. Vera Entia: The Nature of Mathematical Objects in Descartes

Journal of the History of Philosophy 18.1 (January): 23–37.
Brown, M.T., Odum, H.T., and Jorgensen. S.E. 2004. Energy Hierarchy and Trans-
formity in the Universe. Ecological Modelling 178.1: 17–28.
Canguihelm, G. 1965. La conaissance de la vie. Paris: J. Vrin.
Carriero, J. 2008. Substance and Ends in Leibniz. In P. Hoffman, D. Owen, and
G. Yaffe, eds. Contemporary Perspectives on Early Modern Philosophy: Essays in
Honor of Vere Chappell. Peterborough, ON: Broadview Press: 115–40.
Carriero, J. 2009. Between Two Worlds: A Reading of Descartes’s Meditations. Prince-
ton, NJ: Princeton University Press.
Carter, R.B. 1983. Descartes’s Medical Philosophy: The Organic Solution to the Mind-
Body Problem, Baltimore, MD: Johns Hopkins University Press.
Carter, R.B. 1991. Descartes’s Bio-physics. In G. Moyal, ed. René Descartes: Critical
Assessments, vol. IV. London: Routledge: 194–219.
Chalmers, D. 1996. The Conscious Mind. Oxford: Oxford University Press.
Chappell, V. 1994. L’homme Cartésien. In J.-M Beyssade and J.-L Marion, eds.
Descartes: Objecter et Répondre. Presses Universitaires de France: 403–26.
Chapuis, A. and Droz, E. 1958. Automata: A Historical and Technological Study.
Trans. A. Reid. London: B.T. Batsford.
Chomsky, N. 1966. Cartesian Linguistics: A Chapter in the History of Rationalist
Thought. New York, NY: Harper and Row.
Church, A. 1990. Could a Machine Think? Scientific American 262 (January): 26–31.
Churchland, Paul. 1979. Scientific Realism and the Plasticity of Mind. Cambridge:
Cambridge University Press.
Churchland, P. 1986. Matter and Consciousness. Cambridge, MA: MIT Press.
Clarke, D. 2003. Descartes’ Theory of Mind. Oxford University Press.
Cohen, E. 1986. Law, Folklore and Animal Lore. Past & Present 110: 6–37.
Cohen, L. Rosenfield. 1936. Descartes and Henry More on the Beast-Machine:
A Translation of their Correspondence pertaining to animal automatism. Annals
of Science 1.1: 48–61.
Cohen, L. Rosenfield. 1941. From Beast-Machine to Man-Machine. Oxford: Oxford
University Press.
Cohen, S.M. 2008. Kooky Objects Revisited. Metaphilosophy 39. 1: 3–19.
Copeland, J. 2000. The Turing Test. Minds and Machines 10: 519–39.
Copleston, F.C. 1958. A History of Philosophy: Descartes to Leibniz, vol. 4. London:
Search Press.
Corpas, M. et al. 2014. BioJS: An Open Source Standard for Biological
Visualisation—Its Status in 2014. F1000Research, February.
Cottingham, J. 2008. Cartesian Trialism. Mind 94.374: 218–30.
Cummins, R. 1975. Functional Analysis. Journal of Philosophy 72.20: 741–65.
Cummins, R. 2002. Neo-teleology. In A. Ariew, R. Cummins, and M. Perlman, eds.
Functions: New Essays in the Philosophy of Psychology and Biology. Oxford: oxford
University Press: 157–72.
Damasio, A. 1994. Descartes Error: Emotion, reason and the Human Brain. New
York: Avon Books.
  241

Davidson, D. 1984. Rational Animals. Dialectica 36: 317–28.

De Solla Price, D. 1964. Automata and the Origins of Mechanism and Mechanistic
Philosophy. Technology and Culture 5.1: 9–23.
De Sousa, R. 2015. Love: A Very Short Introduction. Oxford University Press.
Dennett, D. 1984. Cognitive Wheels: The Frame Problem in Artificial Intelligence. In
Christopher Hookway (ed.), Minds, Machines and Evolution. Cambridge Univer-
sity Press: 129–51.
Dennett, D. 1995. Darwin’s Dangerous Idea: Evolution and the Meanings of Life. New
York: Simon and Schuster.
Des Chene, D. 1996. Physiologia: Natural Philosophy in Late Aristotelian and Carte-
sian Thought. Ithaca, NY: Cornell University Press.
Des Chene, D. 2000a. Life’s Form: Late Aristotelian conceptions of the soul. Ithaca,
NY: Cornell University Press.
Des Chene, D. 2000b. Life and health in Cartesian natural philosophy. In
S. Gaukroger, J. Schuster, and J. Sutton, eds. Descartes’ Natural Philosophy.
London: Routledge: 723–35.
Des Chene, D. 2001. Spirits and Clocks: Machine and organism in Descartes. Ithaca,
NY: Cornell University Press.
Des Chene, D. 2008. Aristotelian natural philosophy: Body, cause, nature. In Janet
Broughton and John Carriero, eds. A companion to Descartes. Oxford: Blackwell:
17–32.
Detlefsen, K. 2001. Generation and the Individual in Descartes, Malebranche and
Leibniz, University of Toronto. Dissertation.
Detlefsen, K. 2013. Teleology and Natures in Descartes’ Sixth Meditation. In
K. Detlefsen, ed. Descartes’ Meditations: A Critical Guide. Cambridge: Cambridge
University Press: 153–76.
Detlefsen, K. 2016. Descartes on the Domain and Theory of Life. In P. Distelzweig,
B. Goldberg, and E.R. Ragland, eds. Early Modern Medicine and Natural Philoso-
phy. Springer: 141–71.
Distelzweig, P. 2015. The Use of Usus and the Function of Functio: Teleology and its
Limits in Descartes’ Physiology. Journal of the History of Philosophy 53.3: 377–99.
Farrell, A.P. 1970. The Jesuit Ratio Studiorium of 1599. Washington, D.C. Conference
of Major Superiors of Jesuits.
Feingold, M. ed 2003. Jesuit Science and the Republic of Letters. Cambridge, Mass.:
MIT Press.
Flannery, M.C. 2006. “The Biology of Light.” The American Biology Teacher 68 (4):
248–51.
Ford, K.M. and Pylyshyn, Z.W. eds. 1996. The Robot’s Dilemma Revisited: The Frame
Problem in Artificial Intelligence. New York, NY: Ablex Publ.
Fuchs, T. 2001. The mechanization of the heart: Harvey and Descartes. Trans.
M. Grene. Rochester, NY: Rochester University Press.
Fudge, E. 2002. Perceiving Animals: Humans and Beasts in Early Modern English
Culture. Chicago: University of Illinois Press.
Garber, D. 1978. Science and Certainty in Descartes. In M. Hooker, ed. Descartes: Critical
and Interpretative Essays. Baltimore, MD: Johns Hopkins University Press: 114–51.
242 

Garber, D. 1983. Understanding interaction: What Descartes should have told

Elisabeth. Southern Journal of Philosophy 21 supp: 15–32. Reprinted in Garber
(2001): 168–88.
Garber, D. 1992. Descartes’ Metaphysical Physics. Chicago, IL: Chicago University
Press.
Garber, D. 2001. Descartes Embodied. Cambridge: Cambridge University Press.
Garber, D. 2002. Descartes and the Scientific Revolution: Some Kuhnian reflections.
Perspectives on Science 9.4: 405–22.
Gaukroger, S. 1995. Descartes: An Intellectual Biography. Oxford: Clarendon Press.
Gaukroger, S. 2000. The resources of Descartes’ mechanistic physiology and the
problem of goal-directed processes. In S. Gaukroger, J. Schuster and J. Sutton, eds.
Descartes’ Natural Philosophy. London: Routledge: 383–400.
Gaukroger, S. 2002. Descartes’ System of Natural Philosophy. Cambridge: Cambridge
University Press.
Gaukroger, S. 2010. Descartes’ theory of perceptual cognition and the question of moral
sensibility. In J. Cottingham and P. Hacker, eds. Mind, Method and Morality: Essays
in honour of Anthony Kenny. Oxford: Oxford University Press: 230–51.
Gibbard, A. 1975. Contingent Identity. Journal of Philosophical Logic 4: 187–221.
Gilhus, I.S. 2006. Animals, Gods and Humans: changing attitudes towards animals in
Greek, Roman and Early Christian ideas. London: Routledge.
Gill, C 1988. Personhood and Personality: The Four-Personae Theory in Cicero, De
Officiis. Oxford Studies in Ancient Philosophy, Vol. 6. Oxford: Oxford University
Press, pp. 169–199.
Gilson, É. 1930/75. Etudes sur le rôle de la pensée médiévale dans la formation du
système cartésien. Paris: J. Vrin.
Godfrey-Smith, P. 1993. Functions: consensus without unity. Pacific Philosophical
Quarterly 74: 196–208.
Godfrey-Smith, P. 1994. A Modern History Theory of Functions. Nous 28: 344–62.
Gombay, A. 2007. Descartes. Oxford: Blackwell.
Gouhier, H. 1962. La pensée métaphysique de Descartes. Librairie philosophique.
Paris: J. Vrin.
Grene, M. 1985. Descartes. London: Harvester Press.
Grice, P. 1957. Meaning. The Philosophical Review 66: 377–88.
Griffiths, P. 1993. Functional analysis and proper functions. The British Journal for
the Philosophy of Science 44.3: 409–22.
Griffiths, P. and Tabery, J. 2013. Developmental Systems Theory: What Does It
Explain, and How Does It Explain It? In R.M. Lerner, J.V. Lerner, and J.B. Benson,
eds. Advances in Child Development and Behavior 44. Amsterdam: Elsevier: 65–94.
Grunbaum A. 1952. A Consistent Conception of the Extended Linear Continuum as
an Aggregate of Unextended Elements. Philosophy of Science 19.4: 288–306.
Guenancia, P. 1983. Descartes selon l’ordre politique. Presses Universitaires de
France.
Gueroult, M. 1968. Descartes selon l’ ordre des raisons. 2nd ed. Paris: Montaigne.
Gunderson, K. 1964. Descartes, La Mettrie, Language and Machines. Philosophy 39:
193–222.
  243

Hall, T.S. 1970. Descartes’ Physiological Method: Position, principles, examples.

Journal of the History of Biology 3: 52–79.
Harvey, R. 1975. The Inward Wits: Psychological Theory in the Middle Ages and the
Renaissance. London: Warburg Institute Surveys no. 6.
Hatfield, Gary. 1993. Reason, nature and God in Descartes. In S. Voss, ed. Essays on
the Philosophy and Science of René Descartes. Oxford: Oxford University Press:
259–87.
Hatfield, Gary. 1998. The Cognitive Faculties. In D. Garber and M. Ayers, eds. The
Cambridge History of Seventeenth Century Philosophy, v.2. Cambridge University
Press: 953–1002.
Hatfield, Gary. 2008. Animals. In J. Broughton and J. Carriero, eds. A Companion to
Descartes. Oxford: Blackwell: 404–25.
Hatfield, Gary. 2011. Transparency of Mind: The Contributions of Descartes, Leibniz
and Berkeley to the Genesis of the Modern Subject. In H. Busche, ed. Departure for
Modern Europe: A Handbook of Early Modern Philosophy (1400–1700). Hamburg:
Felix Meiner Verlag: 361–75.
Hattab, H. 2007. Concurrence or Divergence? Reconciling Descartes’s Physics with
his Metaphysics. Journal of the History of Philosophy 45.1: 49–78.
Hieronymi, P. 2005. The Wrong Kind of Reason. The Journal of Philosophy 102.9
(September): 437–57.
Hill, D. R. 1996. A History of Engineering in Classical and Medieval Times. Illinois:
Open Court.
Hoffman, P. 1986. The Unity of Descartes’s Man. The Philosophical Review 95: 339–70.
Hoffman, P. 1990. Cartesian Passions and Cartesian Dualism. Pacific Philosophical
Quarterly 71: 310–33.
Hoffman, P. 1999. Cartesian Composites. Journal of the History of Philosophy 37:
251–70.
Hoffman, P. 2002. Descartes’ Theory of Distinctions. Philosophy and Phenomeno-
logical Research 64.1: 57–78.
Hoffman, P. 2008. The Union and Interaction of Mind and Body. In J. Broughton
and J. Carriero, eds. A Companion to Descartes. Oxford: Blackwell: 390–403.
Holden, T. 2004. The Architecture of Matter. Oxford: Oxford University Press.
Hood, H. and Galas, D. 2003. The Digital Code of DNA. Nature 421: 444–8.
Hoyningen-Huene, P. 1989. Epistemological Reductionism in Biology: Intuitions,
Explications, and Objections. In P. Hoyningen-Huene. and F.M. Wuketits, eds.
Reductionism and Systems Theory in the Life Sciences. Dordrecht: Kluwer.
Hoyningen-Huene, P. and Wuketits, F.M., eds. 1989. Reductionism and Systems
Theory in the Life Sciences. Dordrecht: Kluwer.
Hume, David. 2001. A Treatise of Human Nature (“SBN”), edited by David Fate
Norton and Mary J. Norton. Oxford: Oxford University Press.
Hurley, Andrew. 2001. Diners, Bowling Alleys and Trailer Parks: Chasing the American
Dream in Postwar Consumer Culture. New York: Basic Books.
Hyde, W.W. 1916. The Prosecution and Punishment of Animals and Lifeless Things
in the Middle Ages and Modern Times. University of Pennsylvania Law Review
and American Law Register 64.7: 696–730.
244 

James, S. 2008. Democracy and the Good Life in Spinoza’s Philosophy. In

C. Huenemann, ed. Interpreting Spinoza: Critical Essays. Cambridge: Cambridge
University Press: 128–46.
Jaynes, J. 1970. The Problem of Animate Motion in the Seventeenth Century. Journal
of the History of Ideas 31: 119–234.
Jørgensen, Sven E., Søren Nors Nielsen, and Brian D. Fath. 2016. Recent Progress in
Systems Ecology. Ecological Modelling, 40th anniversary of ecological modelling
journal 319 (January): 112–18.
Kalderimis, A. et al. 2014. BioJS DAGViewer: A Reusable JavaScript Component for
Displaying Directed Graphs. F1000Research, February.
Kim, J. 1999. Making sense of emergence. Philosophical Studies 95: 3–36.
King, P. 2000. The problem of Individuation in the Middle Ages. Theoria 66: 159–84.
Kitano, Hiroaki. 2002a. Systems Biology: A Brief Overview. Science 295.5560: 1662–4.
Kitano, Hiroaki. 2002b. Computational systems biology. Nature 420.6912: 206–10.
Kripke, S. 1972. Naming and Necessity. Harvard University Press.
La Porte, J. 1928. La Finalité Chez Descartes. Revue d’Histoire de la Philosophie 2.4:
366–96.
Lennon, Thomas. 2007. The Eleatic Descartes. Journal of the History of Philosophy
45.1: 29–47.
Lennon, Thomas 2013. Descartes’s Supposed Libertarianism, Journal of the History
of Philosophy, 51, 2: 223–248.
Liu, C. 2012. Unification in Descartes; Philosophy of Mathematics. Dissertation,
University of North Carolina.
Lotka, Alfred J. 1920. Analytical Note on Certain Rhythmic Relations in Organic
Systems. Proceedings of the National Academy of Sciences 6.7: 410–15.
Lotka, Alfred J. 1922. Natural Selection as a Physical Principle. Proceedings of the
National Academy of Sciences of the United States of America 8.6: 151–4.
Lotka, Alfred J. 1939. A Contribution to the Theory of Self-Renewing Aggregates,
With Special Reference to Industrial Replacement. The Annals of Mathematical
Statistics 10.1: 1–25.
Lotka, Alfred J. 1957. Elements of Mathematical Biology. Mineola, N.Y: Dover.
Machamer, P.K. 1976. Causality and explanation in Descartes’s natural philosophy,
In P.K. Machamer and R.G. Turnbull, eds. Motion and Time, Space and Matter:
Interpretations in the History and Philosophy of Science. Columbus, OH: Ohio
State University Press.
Machamer, P.K., Darden, L. and Craver, C.F. 2000. Thinking About Mechanism.
Philosophy of Science 67.1: 1–25.
MacIntosh, J.J. 1997. The argument from the need for similar or “higher” qualities:
Cudworth, Locke, and Clarke on God’s existence. Enlightenment and Dissent 16:
29–59.
MacIntosh, J.J. ed. 2008. The Excellencies of Robert Boyle. Broadview Press.
MacKenzie, A.W. 1975. A Word about Descartes’ Mechanistic Conception of Life.
Journal of the History of Biology 8.1: 1–13.
MacKenzie, A.W. 1989. Descartes on Life and Sense. Canadian Journal of Philosophy
19.2: 163–92.
  245

Maly, I.V. ed. 2009. Systems Biology. Dordrecht: Springer.

Manning, G. 2012. Descartes’ healthy machines and the human exception. In S. Roux
and D. Garber, eds. The Mechanization of Natural Philosophy. New York: Kluwer:
237–62.
Martin, C.J. 1998. The Logic of Growth: Twelfth Century Nominalists and the
Development of Theories of the Incarnation. Medieval Philosophy and Theology
7: 1–15.
Matthews, G.B. 1982. Accidental Unities. In M. Schofield and M. Nussbaum, eds.
Language and Logos: Studies in Ancient Greek Philosophy. Cambridge: Cambridge
University Press: 223–40.
Maurice, K. and Mayr, O. 1980. The Clockwork Universe: German Clocks and
Automata, 1550–1650. New York, NY: Neale Watson Academic Publications.
Mayr, E. 1974. Teleological and teleonomic: A New Analysis. Boston studies in the
Philosophy of Science, 14: 91–117.
Mayr, E. 1982. The Growth of Biological Thought: Diversity, Evolution and Inherit-
ance. Cambridge, MA: Belknap Press.
Mazzocchi, Fulvio. 2012. Complexity and the Reductionism–holism Debate in Systems
Biology. Wiley Interdisciplinary Reviews: Systems Biology and Medicine 4.5: 413–27.
McMullen, E. 1978. Newton on Matter and Activity. Notre Dame: University of Notre
Dame Press.
Menn, S. 1995. The Greatest Stumbling Block: Descartes on Real Qualities. In
R. Ariew and M. G. Grene, eds. Descartes and His Contemporaries: Meditations,
Objections and Replies. Chicago, IL: University of Chicago Press: 182–207.
Menn, S. 1997. Suárez, Nominalism, and Modes. In Kevin White, ed. Hispanic
Philosophy in the Age of Discovery. Catholic University of America Press: 226–56.
Millikan, R. 1989. In Defense of Proper Functions. Philosophy of Science 56.2: 288–302.
Mohr, H. 1989. Is the Program of Molecular Biology Reductionistic? In
P. Hoyningen-Huene and F. M. Wuketits. Reductionism and Systems Theory in
the Life Sciences. Dordrecht: Kluwer.
Murdoch, D. 1993. Exclusion and abstraction in Descartes’s metaphysics. The Philo-
sophical Quarterly 43: 38–57.
Nachtomy, O. 2011. Leibniz on Artificial and Natural Machines: Or what it means to
remain a machine to the least of its parts. In J.H. Smith and O. Nachtomy, eds.
Machines of Nature and Corporeal Substance in Leibniz. Dordrecht: Springer:
61–80.
Nagel, E. 1961. The structure of science: problems in the logic of scientific explanation.
New York: Harcourt, Brace & World.
Nagel, T. 1986. The View from Nowhere. Oxford: Oxford University Press.
Nielsen, J. and Lee, S.Y. 2012. Systems Biology: The “New Biotechnology”. Current
Opinion in Biotechnology 23.4: 583–4.
Nielsen, C. and Parker, A. 2010. Morphological Novelties Detonated the Ediacaran—
Cambrian ‘Explosion’. Evolution & Development 12 (4): 345–45.
Normore, C.G. 1996. Scotus, Modality, Instants of Nature and the Contingency of
the Present. In L. Honnefelder, R. Wood, and D. Mechthild, eds. John Duns Scotus:
Metaphysics and Ethics. D. Leiden: E.J. Brill.
246 

Normore, C.G. 2008. Descartes and the Metaphysics of Extension. In J. Broughton

and J. Carriero, eds. A Companion to Descartes. Oxford: Blackwell: 271–87.
Normore, C.G. 2009. Accidents and Modes. In R. Pasnau, ed. Cambridge History of
Medieval Philosophy. Cambridge University Press: 674–88.
O’Connor, T. 1994. Emergent Properties. American Philosophical Quarterly 31:
91–104.
O’Donnell, J.R. 1945. The Meaning of “Silva” in the Commentary on the Timaeus of
Plato by Chalcidius, Medieval Studies 7.1: 1–20.
O’Malley, M.A. and Dupré, J. 2005. Fundamental Issues in Systems Biology.
BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology
27.12: 1270–6.
Odum, H.T. 1994. Ecological and General Systems: An Introduction to Systems
Ecology. Boulder, CO: University of Colorado Press.
Odum, H.T. 2000. Modeling for All Scales: An Introduction to System Simulation. San
Diego: Academic Press.
Osler, M.J. 1996. From immanent natures to Nature as artifice: The reinterpretation
of final causes in seventeenth-century natural philosophy The Monist 79.3:
388–407.
Owens, J. 1951. The Doctrine of Being in the Aristotelian Metaphysics. Toronto, ON:
P.I.M.S.
Pasnau, R. 2011. Metaphysical Themes 1274–1671. Oxford University Press.
Pichot, A. 1993. Histoire de la notion de vie. Paris: Gallimard.
Pylyshyn, Z.W., ed. 1987. The Robot’s Dilemma: The Frame Problem in Artificial
Intelligence. New York, NY: Ablex Publishing.
Radner, D. 1971. Descartes’ notion of the union of mind and body. The Journal of the
History of Philosophy 9: 159–70.
Radner, D.M. and Radner, M. 1996. Animal Consciousness. Amherst, NY: Prome-
theus Books.
Rey, G. 1986. What’s Really Going on in Searle’s “Chinese Room.” Philosophical
Studies 50: 169–85.
Rodis-Lewis, G. 1978. Limitations of the mechanical model in the Cartesian concep-
tion of the organism. In M. Hooker, ed. Descartes: Critical and Interpretative
Essays. Baltimore: Johns Hopkins University Press: 152–70.
Rodis-Lewis, G. 1998. Descartes and the Unity of the Human Being. In
J. Cottingham, ed. Descartes. Oxford University Press: 197–210.
Rorty, R. 1956. The Concept of Potentiality in Aristotle and Descartes, Dissertation,
Yale University.
Rozemond, M. 1998. Descartes’s Dualism. Cambridge, MA: Harvard University
Press.
Rozemond, M. 1999. Descartes on Mind-Body Interaction: What’s the Problem?
Journal of the History of Philosophy 37.3: 435–67.
Rozemond, M. 2003. Descartes on Mind-Body Union and Holenmerism. Philosoph-
ical Topics 31/1/2: 343–67.
Sailor, D.B. 1962. Cudworth and Descartes. Journal of the History of Ideas 23.1:
133–40.
  247

Saveson, J.E. 1960. Differing Reactions to Descartes among the Cambridge Platonists.
Journal of the History of Ideas 21.4: 560–7.
Scaltsas T., Charles, D., and Gill, M.-L. 1994. Unity, Identity and Explanation in
Aristotle’s Metaphysics. Oxford University Press.
Schmalz, T. 1992. Descartes and Malebranche on the Mind-Body Union. The
Philosophical Review 101: 281–325.
Schmitter, A. 2002. Descartes and the Primacy of Practice: the role of the passions in
the search for truth. Philosophical Studies 46: 99–108.
Schmitter, A. 2005. The passionate intellect: reading the (non-) opposition of reason
and emotions in Descartes. In J. Jenkins, J. Whiting, and C. Williams, eds. Persons
and Passions: Essays in Honour of Annette Baier. Notre Dame, IN: University of
Notre Dame Press: 48–82.
Schmitter, A. 2008. How to Engineer a Human Being. In J. Broughton and
J. Carriero, eds. A Companion to Descartes. Oxford: Blackwell: 426–44.
Sealey, R. 2006. Aristotle, Athenaion Politeia 57.4: Trial of Animals and Inanimate
Objects for Homicide. The Classical Quarterly 56.2: 475–85.
Searle, J. 1980. Minds, Brains and Programs. Behavioral and Brain Sciences 3: 417–57.
Sellars, W. 1957. Substance and form in Aristotle. Journal of Philosophy 54. 22:
688–99.
Sellars, W. 1962. Philosophy and the Scientific Image of Man. In R. Colodny, ed.
Frontiers of Science and Philosophy. Pittsburgh: University of Pittsburgh Press.
Reprinted in W. Sellars, 1963. Empiricism and the Philosophy of Mind. London:
Routledge: 1–40.
Shapiro, L. 1999. Princess Elisabeth and Decartes: The union of soul and body and
the practice of philosophy. British Journal for the History of Philosophy 7.3:
503–20.
Shapiro, L. 2003(a). The Health of the Body-machine? Or Seventeenth Century
Mechanism and the Concept of Health. Perspectives on Science 11.4: 421–42.
Shapiro, L. 2003(b) The Structure of the Passions of the Soul and the Soul-body
Union. In B. Williston and A. Gombay, eds. Essays on Passions and Virtue in
Descartes. Humanities Press: 31–79.
Shapiro, L. 2003(c). Descartes’ Passions of the Soul and the Union of Mind and Body.
Archiv für Geschichte der Philosophie 85.3: 211–48.
Shapiro, L. 2007. The Correspondence Between Princess Elisabeth of Bohemia and
René Descartes. Chicago, IL: University of Chicago Press.
Simendic, M. 2011. Hobbes on Persona, Personation, and Representation. Disserta-
tion, University of York.
Simmons, A. 1999. Are Cartesian Sensations Representational? Noûs 33: 347–69.
Simmons, A. 2001. Sensible Ends: Latent Teleology in Descartes’ Account of Sensa-
tion. Journal of the History of Philosophy 39.1: 49–75.
Simmons, A. 2003. Descartes on the Cognitive Structure of Sensory Experience.
Philosophy and Phenomenological Research 67.3: 549–79.
Simmons, A. 2008. Guarding the Body: A Cartesian Phenomenology of Perception.
In P. Hoffman and G. Yaffe, eds. Contemporary Perspectives on Early Modern
Philosophy: Essays in Honor of Vere Chappell. Broadview Press: 81–113.
248 

Simmons, A. 2012. Cartesian Consciousness Reconsidered. Philosophers’ Imprint

12.2: 1–21.
Simmons, A. 2014. Sensory Perception of Body: Meditation 6.5. In D. Cunning, ed.
The Cambridge Companion to Descartes’ Meditations. Cambridge: Cambridge
University Press: 258–76.
Skinner, Q. 2005. Hobbes on Representation. European Journal of Philosophy 13.2:
155–84.
Skirry, J. 2001. A Hylomorphic Reading of Descartes’ Theory of Mind-Body Union.
Proceedings of the American Catholic Philosophical Association 75: 267–83.
Skirry, J. 2005. Descartes and the Metaphysics of Human Nature. London and New
York: Thoemmes-Continuum Press.
Smith, J.E. and Phemister, P. 2007. Leibniz and the Cambridge Platonists: the Debate
over Plastic Natures. In P. Phemister and S. Brown, eds. Leibniz and the English
Speaking World. Dordrecht: Springer: 95–110.
Sorabji, R. ed. 1987. Philoponus and the Rejection of Aristotelian Science. Ithaca, NY:
Cornell University Press.
Staddon, J.E.R. 1983. Adaptive Behavior and Learning. Cambridge: Cambridge
University Press.
Svoboda, D. 2015. Aquinas on One and Many. Editiones Scholasticae.
Thompson, M. 2008. Life and Action: Elementary Structures of Practice and Practical
Thought. Cambridge, MA: Harvard University Press.
Thornburg, D.A. 1991. Galloping Bungalows: The Rise and Demise of the American
House Trailer. Hamden, CT: Archon Books.
Turing, A.M. 1950. Computing Machinery and Intelligence. Mind 59: 433–60.
Udias, A. 2014. Jesuit Contributions to Science. Dordrecht: Springer.
Van Inwagen, P. 1990. Material Beings. Ithaca, NY: Cornell University Press.
Ward, T. 2011. The Hylomorphism of John Duns Scotus. Dissertation, UCLA.
Watson, R. 2007. Descartes’s Ballet. St. Augustine’s Press.
Wee, C. 2002. Self, Other and Community in Descartes’ Ethics. History of Philosophy
Quarterly 19.3: 255–73.
Wilson, M. 1997. Mechanism and Fracture in Cartesian Physics. Topoi 16.2: 141–52.
Wilson, M. 2010. Mixed-level Explanation. Philosophy of Science 77.5: 933–46.
Wilson, M. Dauler. 1978a. Descartes. New York: Routledge.
Wilson, M. Dauler. 1978b. Cartesian Dualism. In M. Hooker, ed. Descartes: Critical
and Interpretative Essays. Baltimore, MD: Johns Hopkins University Press:
197–211.
Wood, 1988. Cicero’s Social and Political Thought. Berkeley, CA: University of
California Press.
Wright, L. 1973. Functions. The Philosophical Review 82.2: 139–68.
Wuketits, F.M. 1989. Organisms, Vital Forces and Machines: Classical Controversies
and the Contemporary Discussion “Reductionism vs. Holism.” In P. Hoyningen-
Huene and F.M. Wuketits, eds. Reductionism and Systems Theory in the Life
Sciences. Dordrecht: Kluwer.
Yachdav, G. et al. 2015. Anatomy of BioJS, an Open Source Community for the Life
Sciences. ELife 4: e07009.