co») United States
US 2017001571 7A1
c2) Patent Application Publication (o) Pub. No.: US 2017/0015717 Al
MOE et al.
(43) Pub, Dat Jan. 19, 2017
(64) METHODS AND CompostT10N:
COMPRISING TAU OLIGOMERS
(71) Applicant: OLIGOMERIX, INC., New York, NY
ws)
(72) laventors: JAMES G. MOE, Stamioad, CT (US);
Eliot J. Davidowsitz, West Hempstead,
NY (Us)
(21) Appl. Now 18/285,181
-
ol Oct. 4, 2016
Related
Application Data
(68) Continuation of application No. 19/060,143, filed on
Sep. 9, 2011, now Pat. No. 9,864,122, filed us appli-
cation No, PCT/USO9108776 on Avg. 21, 2009,
(60) Provisional application No, 61/189,679, filed on Aug,
20, 2008
Publication Classification
(51) Inch
COT 1447
AIK 38/17
(200601)
(200501)
CO7K 14/47 (2013.01); ABIK 38/1709
Q01301)
7 ABSTRACT
Tau protein has a causative role in Alzheimer’s disease and
ruiple other nenrodegenerative disorders exhibiting tau
histopathology collectively eed tavopathies. The primary
Function of tau protein is Wo facie assembly and min
tenance of microtubules in neuronal axons. In the disease
process tau protein becomes modifiod, loses its afinity to
ricrotubules and accumulates in the cell body where it
forms aggregates. The lage neurofibrillary tangles formed
from tau protein assembled into filaments were thought to be
the pathological structure of tau, However, more recent work
indicates that smaller, soluble oligomeric forms of tau are
best associated with neuron loss and memory impairment,
Here, novel compositions of tau oligomers and. novel
mechanisms for au oligomer nvcleation, extension and
termination are taught, Methods for producing and purifying
these structures forthe development of small molecule and
mmunotherapetes as well as antibodies for biomarkers of
renrodegenerative diseases are taught.US 2017/0015717 Al
Jan. 19, 2017 Sheet 1 of 25
Patent Application Publication
snujue}-9
Nore
isnujue}-N
Nie
1
e3]
Lge
Nzrie
pager
Oly
ay
Nanay
eu
by
Lpb
“L aunbig
east |US 2017/0015717 AL
Jan. 19,2017 Sheet 2 of 25
Patent Application Publication
zzesho
94Hd
Lezsko
x94Hd
. uolBey
YO-SUl|Old
Lov
La pugengzuyru| zd | td
urewop Ajquiessy ulewop uoKoelo1dg
(NZray) bpp nel
‘Z asnBlyPatent Application Publication Jan. 19, 2017 Sheet 3 of 25 US 2017/0015717 Al
Figure 3,
HIPPOCAMPUS SECTION
Lo SUBICULUM
: |
ENTORHINAL CORTEXPatent Application Publication Jan. 19, 2017 Sheet 4 of 25 US 2017/0015717 Al
Figure 4.
tau oligomers
Pathological
)US 2017/0015717 AL
Jan. 19,2017 Sheet 5 of 25
Patent Application Publication
yjyeaq uosneN
Ro
°
saawobijo ne}
aeinyjeoesyxy
uoniqiyut
onedeseyjounwuy
“g ounblg
uojnen AuyeeH
{ siOyIEWOIG
siewobijo ne}
aejn}jaoe4}U]Patent Application Publication Jan. 19, 2017 Sheet 6 of 25 US 2017/0015717 Al
Figure 6.
Tau Oligomer (RFU/mi CSF)
09! Severe AD AD non-ADPatent Application Publication Jan. 19, 2017 Sheet 7 of 25 US 2017/0015717 Al
Figure 7.
Non-Reducing Reducing
Conditions = Conditions
3
ae aa
F423 45
Disulfide-
Linked tau
oligomers
Monomer
J} Tau sctrms
Tau degradation
productsPatent Application Publication Jan. 19, 2017 Sheet 8 of 25. US 2017/0015717 Al
Figure 8.
Heat and
Reductant 0) 4)
a
F123 45
5
Trimer —
Dimer —
Monomer —Patent Application Publication Jan. 19, 2017 Sheet 9 of 25 US 2017/0015717 Al
|
C-terminal
tau,,, oligomers
C-terminal tau
er
=
Figure 9.
I
a
g
3
&
E
£
zPatent Application Publication Jan. 19, 2017 Sheet 10 of 25 US 2017/0015717 Al
Figure 10.
Hexamer 6°
Pentamer (5°)
Tetramer (4°)
Trimer (3°)
Dimer (2°)
Monomer (1°)Patent Application Publication Jan. 19, 2017 Sheet 11 of 25. US 2017/0015717 Al
Figure 11.
2US 2017/0015717 AL
Jan. 19, 2017 Sheet 12 of 25
Patent Application Publication
~—
D006
—
mo
EEA: Oeli0z'c0V
seul, peyuind |
Se se me
06 {oz 108
208 0 109 fos Rear
Jew paylind
“@L eunbi4Patent Application Publication Jan. 19, 2017 Sheet 13 of 25 US 2017/0015717 Al
Trimer
Figure 13.
Dimer
min. 60-min.. 15.min. 60 min.Patent Application Publication Jan. 19, 2017 Sheet 14 of 25. US 2017/0015717 Al
D
ne ee ee
Figure 14.
|
i
|
M
suawobijo ney
JappeyUS 2017/0015717 AL
Jan. 19, 2017 Sheet 15 of 25
Patent Application Publication
(yp) sauoUOW | pyne| —-+|
*YEWOBIO
+ (ZOZH) UOHEPIXO,
BN ON
+
+ uoeqnoul
“gy ounbiUS 2017/0015717 Al
Jan. 19, 2017 Sheet 16 of 25
Patent Application Publication
duuuddduuduuddddududddududddduddduuvuuddudduduudddudddududdddudu
SAAGSMAA 1S YOHGLNWAWNG UAT TAHLEI MAND DOG AULINGTSSINSOAUCNEOTHESHARA
eR te + =F teh ee
(s+ Trezeao ‘ee peBxeyo eT) Mf (T+ TTezeac ‘ee peSzeyo TT) pe
duuuuddduduuduudddudduduudduududuuuuuddudddduuddduddududdduududuuwudddudddduudddudduduuuuuudd
ODOHANHH INDTSHON SLANS TAAAMAALOASDOOAAHM I NOASDONSOANS TATHANT LOANS GOWN INGLSOINSMANNTAANSASVIO
+t + + = + tonto ~ +t + to th EH
(vt Trezea0 ‘ee pebzeyo 1) EY (b+ TTeeAo ‘ee peBxeyo g) ZY (+ TTeZeAo ‘ee poBzeyo a) TE
suyeuog Surpute eTAgn;oxoTH AEE Ue
“QL eunBi4Patent Application Publication Jan. 19, 2017 Sheet 17 of 25 US 2017/0015717 Al
ao
Qo
ao
¥
O-— ow
is a
7 +
2 O—o
®
i §
o-oo
[4
¥
o-o
3RPatent Application Pul
blication Jan. 19, 2017 Sheet 18 of 25 US 2017/0015717 Al
Figure 18.
BS
Oe R3-3R R3 Besheet regions
=)US 2017/0015717 Al
Jan. 19, 2017 Sheet 19 of 25
Patent Application Publication
2v 8s [ge ME]
20°97 e6'sv UP!
es69 [6L were
levee [eres _UPraE|
lsros ‘sete Ubrab}
StL eS6hh MEMbYE
ee Zeb 9g'8z) UPA SE
ZS SEL ieZ Zeb Mbrebreb
LzosL eysoL _|Seubruvee|
\es OLE 6S rdt PSP PISE
ez'eeh zzeeh Ubrebbryy
MN mw
quereddy| _ payeinsjeo)
JeWOUoW
Jewig
sown
we/prprds ——___
JOWeIOL { Uprivriyras — >
‘UbRsbhbite —————
“6b ounBi4Patent Application Publication Jan. 19, 2017 Sheet 20 of 25 US 2017/0015717 Al
Figure 20.
ARRS
ARR? \ ih
& \
oe!
&
RR RRS
Se R2-3R RB B-shest regionsPatent Application Publication Jan. 19, 2017 Sheet 21 of 25 US 2017/0015717 Al
Figure 21,
wn Det be
ARR3 |
=>
cy 4R RO-3R R3 B-sheet regions
AR R3-3R R3 B.sheet regionsPatent Application Publication Jan. 19, 2017 Sheet 22 of 25 US 2017/0015717 Al
Figure 22,
R R3-3R R3 f-sheet regionsPatent Application Publication Jan. 19, 2017 Sheet 23 of 25 US 2017/0015717 Al
Figure 23.
4R R2-3R R3 Bssheet regions
AR R3-3R Ro B-sheet regionsUS 2017/0015717 Al
Jan. 19, 2017 Sheet 24 of 25
Patent Application Publication
spToe OUTWe 62 HOOD-HHINOTISOONSLANSTOAGMAATOASDOO-NZH
z epradea
spToe outue 0€ HOOD-AHNINGNSDONSOANS TOTMANIIOAMSOD-NZH
T eptadea
‘ve einBi4US 2017/0015717 Al
Jan. 19, 2017 Sheet 25 of 25
Patent Application Publication
puog epuinsiq
uojBeu eoys-9 Ex YE-TY UP SS
ooE
San SPSS GAANXAIONS95
AHMINGMS SOANSTOTINNITOAMSSS
TLée
“Gz eunBi4US 2017/0015717 Al
METHODS AND COMPOSITIONS
COMPRISING TAU OLIGOMERS
0001] This application claims the benefit ofthe fing date
‘of US, Provisional Application No, 61/189,679, filed Aug.
20, 2008, entitled “Methods And Composition Comprising
‘Tau Oligomers.” The entie disclosure is hereby incorpo-
rated by reference into the present disclosure
BACKGROUND
[0002] Alzheimer’s disease (AD) is the most common
ans of dementia inthe elderly ht ffs an estimated 15
milion people worlwide nd 40% ofthe population above
85 yeas. Te cists is harcterizd by progressive loss of
msm, psec end movement with total inepactaton of
the pict and eventually death AD tas a tel all on
thowe wth the disco well thr fils, Sends and
ceaegiver.
[0003] ‘The symptoms of AD manifest slowly andthe fest
Symptom may only be mild fngtnes, In this stage,
individuals may forget recent events, activities, the names of
familar people or things and may not beable slve simple
math problems. As the disease progresses into moderate
Stages of AD, symptoms ae mor tsi noice an become
Serious enovgh 10 case people with AD or their family
members sek metal help. Moderate-stage symptoms of
AD incude forgetting how to do simple tsks such as
{smoming nd problons develop with speaking. undrstand-
ing, reading, oF writing. Severe sage AD patents may
hocome anxious or aggressive, may wander aay’ fo
home and ultimately need ttl cae
[0004] No core is curently aaiable for AD. Tey:
inedcaion therapy focuses on controling the symptoms of
AD and is varius stages, Fr example, mild vo moderate
AD can involve tetent with cholinesterse inhibitors
such as Cognex® (tacrine), Aricept® (donepezil), Exelon®
(vastiamine), or Razadyae (galantamine). Wheres mod
rato severe AD canbe treated with Namen (memn-
tng). These medications may help delay or peveat AD
Symptoms fom becoming worse fora limited period of
tine So eal AD treatments warned. However thee i
no cea evidece that these medications have any eat on
the underying progression ofthe disease
10005] ‘There i a large and rapidly growing unmet need
for disease modifying drugs for Alzheimer’s disease (AD).
The classical hallmarks of AD are intrneuroal plaques
consisting of povpttes or aggregnes of alo beta
protein (Ap), and intra-neuronal neurofibrillary tangles
(NET) of ta protin. Tau protein prometes microtubule
assembly and sail and serie fr the faneton of
jxons,whsres the nomual funtion of AB is not filly
understood. The amyloid cascade hypothesis has been
‘viel accepted a the pathological pathway of AD. Teholds
that the generation of AB and accumulation of AB aggregates
inthe brain iit th disease process. I is supped by
senetic evidence that mutations leading increased acu
mulation of AB aggregates leads to familial AD, However,
ther ars umber of wenknescs inthe A cascode hypoth
cis in that it doesnot adress the importance of ter
pathways that can cause neurodegenerstion (Seabrook el
2007). The acumlation and distbaton of NFTs in the
brsins of AD patients is highly corelated with disease
progression and can be tsa fo age AD by postmortem
Bruin hstopabology, whereas tha is poor conelation
Jan. 19, 2017
between AD and the accumulation of neue plagues com-
posed of beta amyloid. This has been used to challenge the
‘anyloid hypothesis Josephs et a, 2008), Lockluster results
for AB directed therapeutics in lat stage clinical trials has
increased interest in exploring allemative targets for drug
iscovery such as tau (Iabal etal, 2008),
[0006] While extensive research in the past decade has
‘denied possible biomarkers foe AD, there i stil an urgent
reed for composition and methods that are specifically
usefl in diagnosing, stratifying, oF monitoring the progres-
sion oF regression of AD. Ness compositions and methods
fare also needed that serve as dag targets for the identifica-
tion of new medication therapies to teat AD and to monitor
illereat medications therapeutic ellect when used to teat
AD, as well as compositions that are usefil as immuno-
therapeutic agents
SUMMARY
[0007] The present application provides methods and
compositions comprising tau oligomer of a fragment oF
peptide derivative thereof. These tau oligomers, fragments
‘or peptide derivatives thereo can be used in diagnostic and
prognostic assays, allowing AD to be diagnosed earlier
(bile the patient is alive) and more accurately than was
previously possible. ‘These tau oligomers, fragments or
peptide derivatives thereof can better help the clinician
stratify, or monitor the progression or regression of AD, than
currently available assays. In addition, tau oligomers, frag-
ments oF peptide derivatives thereof identified acconding to
the composition and methods disclosed ean serve as dru
targets forthe identification of new therapeutic agents forthe
treatment of AD or other tauopathies and monitor diferent
medication therapies benefit when used to teat AD or other
tauopathies. In some embodiments, these tau oligomers,
fragments or peptide derivatives thereof can be used a
Jimmunotherapeutic agents to stimulate the immune system,
{0008} In some embodiments, there isa novel model for
‘au oligomerization that provides novel compositions of tau
oligomers that help teach how the relative overexpression of
4 tau can facilitate tan aggregation and neurodegenerative
disease and how these strictures may be used for discovery
of small molecule drugs, immunotherapedtics and biomark-
es for neurodezeneratve diseases.
{0009} In one embodiment, composition comprising
Stabilized ta oligomer or fragment or peptide derivative
thereof,
[0010] In another embodiment, a composition is provided,
‘wherein (the ta oligomer isin atleast one conformation
comprising tau dimer, ta trimer, tau tetamer, tau pentamer,
‘au hexamer, tau septamer, tau octamer, tau nonamer, tat
decamer, tau uadecamer, tau dodecamer,3R tau, 4R tau, oF
mixtures of 3R tau and 4R tau of a fragment or peptide
derivative thereof or a combination thereo! or (i) the tau
‘monomeric unit comprises one of SEQ ID NO. 1-6: o¢ (ii)
the ta oligomers stable for at east 2 months; or Gv) the tau
oligomer is substantially purified and/or isolate.
[0011] In some embodiments, a method is provided for
screening an agent for modulation or disruption of purified
‘au dimer, tu time, ta tetramer, tau pentamer, au hex-
amer of a combination thereof, the method comprising: a)
contacting a sample containing tau dime, tau trimer, tau
tetramer, tau pentamer, tay hexamer of a combination
‘hereof with an agent suspected of being capable of modu
Iating tu oligomer formation or disrupting tau oligomers;US 2017/0015717 Al
‘and b) detecting the amount of tau dimer, tw trimer, tau
tetramer, tau pentamer, tat hexamer or a combination
thereof, wherein deerease in tau dimer, tu trimer, tau
tetramer, tau pentamer, ti hexamer or a combination
thereof indicates that the agent modulates tau oligomer
formation or disrupts tau oligomer
[0012] In some embodiments, a composition is provided
‘comprising a tau dimer, which comprises tau 4R-tau 4R.
dimer, au 3R-4R tau dimer, or tau 3R-tau 3R dimer.
[0013] In some embodiments, a compound is provided
that prevents tau-tau binding resulting from hydrogen band-
ing, van der Waals interaction such that disulfide bond
formation is inhibited or prevented,
[0014] In some embodiment, 9 method is provided for
feveening an agent for modulation or disruption of tau
‘oligomer, wherein the agent comprises curcumin,
demethoxycurcumin, —bisdemethoxycureumin, andlor
morin
[0015] In some embodiment, «method is provided for
Sereening an agent for modulation or disruption of tau
‘oligomer, wherein the ageat disrupts tau-tau oligomeriza-
tions by inhibiting tau-t binding,
[0016] In some embodiments, atau oligomer composition
is provided comprising tau monomer units bound to each
‘other by one or more disulfide bonds
[0017] In some embodiments, a tan oligomer composition
is provided, wherein he ta oligomer is tu dimer bound to
‘each other by intermolecular disulfide bonds.
[0018] In some embodiments, atau oligomer composition
is provided, wherein the tau oligomer is tau dimer bound to
‘each other by intermolecular disulfide bonds and the tau
dimer has 3 or 4 microtubule binding repeat regions.
[0019] In some embodiments, atau oligomer composition
is provided comprising one or more fragments of au com-
prising R2 R3-R3, oF R3-R3, or R2RI-R2R3 compleres
held together by one of more intermolecular disulfide bonds
[0020] In some embodiments, a reagent composition is
provided comprising a predetermined ratio of tau 3R to tau
4R used 0 generate tau oligomers of from about two to
about twelve tau monomer unis.
[0021] In some embodiments, a weagent composition is
provided used to identify a pathological binding partner
associated with AD or tauopatis.
[0022] In some embodiments, a reagent composition is
provided used to perform high resolution NMR, X-ray
‘cystallography, generating antibodies t specific oligomer
sizes, or for immunotherapy.
[0023] Additional features and advantages of various
‘embodiments will he set firth in part inthe desription that,
follows, and in part will be apparent fom the description, or
may be leamed by practice of various embodiments. The
objectives and other advantages of various embodiments
will be weaized and attained by means ofthe elements and
‘combinations particularly pointed out in the description and
‘appended claims
BRIEP DESCRIPTION OF THE DRAWINGS
0024] In part other aspects, Features, benefits and advan-
tages ofthe embodiments wll be apparent with regard to the
following description, appended claims and accompanying
drawings where:
10025] FIG. 1 illustrates the six tau protein isoforms that
result from alternate splicing wit the N-terminal inser in
the acidic domain (E2 and 3), the repeat domains of the
Jan. 19, 2017
microtubule binding region (R1,R2, R3 and Ré) and the tau
pseudo repeat (R) indicated. Note tht there are three tau
protein isoforms with three repeats (1382, tu381 and
tau410 only contain repeats RI, R3 and RA) and three tau
protein isoforms with four repeats (@u383, taudl2 and
tau441) inthe microtubule binding domain (RI, R2, R3 and
Ray,
{0026] FIG. 2iustratestau44 structural features inchd-
ing the projetion damain (N-terminal) the proline rich
region, and assembly domain (C-teminal), Also indicated is
the betasheet forming regions (PHE6* and PHEF6) and the
two oysteines (Cys291 in R2 and Cys82 in R3).AILAR tau
protein joforms contin four repeat regions as shown (RI,
2, RB and 4), whereas 3 tan protein isoforms only
contain three repeat regions (R1, R3 and Ré).
(0027) FIG. 3 illustrates the contiguous spread of tau
pathology is a hallmark of AD. As AD progresses, tay
pathology engulfs the hippocampal structure in highly
Selective and ondely fashion
[0028] FIG, 4 illustrates the proposed mechanism of tau
oligomer-madiated disease propagation. An upstream event
such as oxidation, physical damage, chemical damage,
infection andlor effects mediated by upstream A indvced
pathology (A.); leads to accumulation of tau off of micro-
tubules and intracelilar ta oligomer formation (a dimes,
tau trimer, et.) (B,}, cell death results in release of tau
oligomers extocllulary (C.); whereby extracel tau
oligomers bind to healthy neurons (D.); leading to the uptake
of tam oligomers into healthy cells, and the subsequent
promotion of te formation of additional ta oligomers and
a diseased cell phenotype (E,); The rate of propagation is
directly proportional tothe level of extracellular tau oi-
omer (F)
[0029] FIG. $ illustrates the therapenic intervention
points for halting or aresting disease progression based on
small molecule drugs for intracellular and extracellular tu
oligomers (mest disease process within & neuron and anest
spread of tan pathology to neighboring healthy cells), and
{or active or passive immunotherapy targeting extrceliular
‘av oligomers (arest spread of tau pathology’ to neighboring
healthy cells). The extracellular tau oligomers are useful
biomarkers for disease progression.
[0030] FIG. 6 ilustates that ta-oligomer levels in CSF
scoumulate progressively during disease as determined by
‘an oligomer conformation-specific ELISA. using capture
antibody against tan c-ermimus. The subset of tau oligomers
containing tau with an intat eemninus was studied using
capture antibody mAb 46, spevific for the 37 carboxyl
temninal amino acids of tau, t0 improve the resolution of
‘oa-AD, moderate AD and severe AD samples in combina
tion with detection antibody pAb ATL
(0031) FIG. 7 ithstrates that dsalfide-tinkes tan oligom-
ers are present in the cerebrospinal fuid (CSF) of AD
patients illustrating the biological relevance of extracelilar
Aisulide inked tan oligomers
{0032] FIG. 8 illustrates that tau in CSP is “reactive” in
that it contains reactive thiols and forms higher onler
auaregates if accelerated by temperature elevation as shown
in the le panel. The pane en the right shows the higher
onder agasepates that are stable to relucing conltions, SDS,
and heat
(0033) FG, 9 ilstrtes 4R tau oligomer form
driven by the microtubule binding domain inthe C-termi:
tus, A tu fragment (18.5 KD) that encompasses the C-te-US 2017/0015717 Al
minus is able to oigomerize (charge approximately +13.2)
whereas a tan fragment (21.5 KD) that encompasses the
Netermius does not form any significant higher order
structures (charge approximately -72). Shown in lane | is
the MW ladder, lane 2 tau4dl monomer, lane 3 Tans]
oligomer mixture, lane 4, the N-terminal portion of tau
protein (amino acids 1-184) does not aggregate, and lane S
‘he C-terminal fragment aminoacids 183-481) that contains
the full 4R microtubule binding domain,
[0034] FIG. 10 illustrates that polymerization of tau oli-
omers occurs by addition of monomeric tau to a growing
chain resulting in progressively longer tau oligomers as
shown for tau]. Evidence for oligomer building via ada-
tion of monomer tau based on accumulation of lower order
structures followed by higher order strectures as shown,
Furthermore, purified monomer is able to form dimers,
‘whereas purified dimer and trimer do not show any higher
‘onder oligomers alier 2 months at 4°.
[0035] FIG. 11 illustrates that tu oligomers can be puri-
fied in stable form as shown for a mixture of tand12
‘oligomers that was purified. To prepare specifi tv oligom-
‘ers at high purification Tau? oligomer enziched prepara:
tions (lane 2) were size-fractionated to isolate monomer
(lane 3), dimer (lane 4), timer (lane S) and tetzamer (Lane 6)
‘and stabilized in butler.
[0036] FIG. 12 illustrates that disulfide mediated tau of
omers have high thermal stability up t0 90” C.
[0037] FIG. 13 illustrates that tau oligomers are highly
Stabile under high salt conditions at 37° C. Tavd4] where
[L—low salt; M~medinm salt; and H—high salt,
[0038] FIG. 14 illustates the temperature stability of
‘auddl oligomers and purified dimer and trimer with and
without reducing agent (DTT) Both the dimer and trimer
show good stability at 37° C. (incubated at 15, 30 and 60
rinotes) Dimer formation dependent on the formation of
‘one of more disulfide bonds. Trimet formation —demon-
strates at least one thiol group is available in the dimer
M_purified monomer D is purified dimer: D® is purified
«dimer plas reducing agent; T—purifed timer; and T*—pu-
ried trimer plus reducing agent.
[0039] FIG. 15 ilustrates intrinsic differences in tau iso-
form oligomerization that provides the basis forthe disulfide
mediated tau oligomer model, 3R tau can only form dimers
‘and has a single eysteine (Cys322); whereas 4R tau forms
nl oligomers without temnination andl has two cysteines
(Cys291 and Cys322). Oxidative conditions caused rapid
‘oligomer formation due to oxidation of free thiols in mano-
erie ta.
[0040] FIG. 16 illustrates microuibule binding domain
structural features through the repeat and pscudo repeat
regions, The amino aid charge i indicated shove the amino
acid abbreviation. The beta-sheet forming regions and eys-
‘eines ate highlighted in bold, Potential proline or glycine
mediated bending regions are underlined. The microtubule
binding regions are defined as follows: RI=Q244 to K274;
R2=V375 to S305; R3=V306 to Q336, R4=V337 to N368,
‘and R'=K369 to $400. In 3R tau isoforms, R2 is absent
[0041] FIG. 17 illustrates the model for formation of
disulfide mediated tau oligomers. For 4R tau protein is0-
forms, there are two cysteines and reaction with monomer oF
‘oligomer leaves a free thiol available for reaction, For 38 tau
protein soforms, there isa single cysteine which terminates
8 growing oligomer chain. In healthy brains, the ratio of
Jan. 19, 2017
SRIAR isoforms is approximately 1.0; whereas in AD Brains
the ratio of 3RVAR is approximately 02-03,
[0042] FIG. 18 illustrates the model of a disulfide medi-
ated strecture for a 3R/3R tau dimer showing alignment of
the peptides in parallel to foem a beta sheet structure
[0043] FG. 19 illustrates the tu oligomers formed using
various ratios of 3R to 4R tan protein isoforms during
reaction. The aecumulation of higher order aggregates indi-
cates thatthe dimer is reactive consisteat with the formation
of only a single disulfide in the initial 4R/4R structure
Incorporation of 3R tau limits oligomer exteasion, Higher
order oligomers formed with increased levels of 4R tau. The
table shows the calculated and appareat moleculae weight
forthe 3R/3R 4R/AR and 3R and 4R tau oligomers formed
[0044] FG. 20 illustrates the model of a disulfide medi-
ated strocture for a 4R/4R tau dimer showing alignment of
the peptides in parallel to form a beta sheet. The formation
cof an intermolecular disulfide Tinkage traps the tau proteins
into an aggregation template that contains wo reactive free
thiol groups.
[0045] FIG. 21 illustrates the model of a disulfide medi-
ated structure for a 4R/R/3R tau trimer showing alignment
‘ofthe peptides in parallel to form a beta sheet, The reaction
of 3R tau protein to the 4RV4R tam dimer eliminates occurs
via additional formation of a disulfide linkage. This results
in the case of the 4R/4R/3R tau timer with a single
remaining reactive fee thiol group. At this time, there is no
‘way to prediet whether the disulfide is between 3R 3 anki
AR R2 or 4R R3. The trimer is shown with the disulfide
linkage to 48 RS strictly for illustrative purposes.
[0046] £1G. 22 illustrates the model of a disulfide medi-
ated structure for a 3R/4R/4R/3R tau tetramer, showing
aligumeat of the peptides in parallel w form an additional
beta shoot structe. The 3R/4RI4RI3R tau tetramer con-
tains no reactive free thiol groups and cannot propogate
isulfide mediated tan oligomers
[0047] FIG, 28 illustrates stacked tu tetramer structure
(QR/4R/4RV3R that is stabilized by the stacking of the beta
sheet regions and by three intermolecular disulfide linkages
[0048] FIG. 24 ios examples of two tau peptides
that encompass the key structural elements for the tau
oligomer dimer that will be used to generate tau oligomer
fie monoclonal antibodies. The two peptides were
designed to contain all important structural elements leading
‘o dimer formation including the beta-sheet forming regions,
cysteines for forming intermolecular disulfide bonds, and
the amino acids located between the proline cap regions
(Pr0270, Pru8OL, Pro832) that disrupt secondary structure
tana or provide for a bead in the protein backbone of the
pareat molecule. Additional peptides may be designed with
Increased or decreased residues on COO— or amine temni-
nus (plus or minus ten amino acids), or mutations leading to
‘amino acid substitutions found in tamopathies. The beta-
sheet forming regions and eystenes a highlighted in bold
[0049] FIG. 25 illustrates a stable taw peptide dimer anti-
en that will be generated to isolate tau oligomer specific
‘monoclonal antibodies. Tau oligomer specific monoclonal
antibodies will be used for drug discovery and diagnostic
purpose, but also have utility as potential passive immu-
notherapeutc agents. The peptide fragments will be adjusted
and tested using structural information (Le. circular dichro-
jsm and fourier transform infrared spectroscopy) to select
tau peptide dimers with beta-sheet structure. Hoth R2+R3