Professional Documents
Culture Documents
2
Recommended Readings and Resources
► TEPHINET
3
Step 0: What Is an Outbreak?
The material in this video is subject to the copyright of the owners of the material and is being provided for educational purposes under
rules of fair use for registered students in this course only. No additional copies of the copyrighted work may be made or distributed.
Definition of an Outbreak
► Epidemic and outbreak both refer to a period when there is occurrence of a disease in
excess of what is usually expected
5
An Outbreak of Meningitis
—Reuters
February 2, 2018
Source: https://www.reuters.com/article/us-usa-flu/u-s-flu-outbreak-worsens-hospitalizations-highest-in-nearly-a-decade-cdc-
idUSKBN1FM2EN, https://www.abcactionnews.com/news/health/46-states-reporting-widespread-flu-outbreaks 9
Defining an
Influenza
Outbreak—1
Source: https://www.cdc.gov/flu/weekly/index.htm 10
Defining an
Influenza
Outbreak—2
Source: https://www.cdc.gov/flu/weekly/index.htm 11
Defining an
Influenza
Outbreak—3
Source: https://www.cdc.gov/flu/weekly/index.htm 12
Defining an
Influenza
Outbreak—4
Source: https://www.cdc.gov/flu/weekly/index.htm 13
Defining an
Influenza
Outbreak—5
Source: https://www.cdc.gov/flu/weekly/index.htm 14
Key Points
► An outbreak is a period when there are more cases than expected for a disease
15
Step 1: Identify Cases
The material in this video is subject to the copyright of the owners of the material and is being provided for educational purposes under
rules of fair use for registered students in this course only. No additional copies of the copyrighted work may be made or distributed.
What Do We Want to Know?
► Who?
► What?
► When?
► Where?
► Why?
2
Stages of an ► Establish case definition and identify cases
Outbreak ► Who?
3
Establish Case Definition and Identify Cases
4
A Good Case Definition Identifies Person, Place, and Time
1. Suspected case
► A person for whom there is suspicion of the disease but no strong evidence or
laboratory confirmation
2. Probable case
► A suspected case for whom there is strong circumstantial evidence of infection
● For example, exposure to a known case
3. Confirmed case
► A person for whom there is definitive clinical or laboratory confirmation that he or she
is a case
6
An Outbreak of Monkeypox!
► “Monkeypox virus was transmitted from ill prairie dogs in child care and veterinary
facilities … most cases of human monkeypox were associated with direct animal contact
…”
2. Probable case
► A patient with known prairie dog exposure with fever or
vesiculopustular rash within 21 days of exposure
3. Confirmed case
► A suspect or probable monkeypox infection with laboratory
confirmation of illness
● For example, virus isolation in culture, virus identified by
PCR
► Once a case definition is established, investigators should look for cases through active
and passive surveillance
► Active surveillance: go into the community and look for cases
► Passive surveillance: look for cases that present at health care centers, etc.
9
Key Points
► Careful consideration should be given to where and how to look for additional cases
10
Exercise: Make Make a definition for suspected, probable, and confirmed cases
a Case for the following outbreak:
Definition ID Onset Symptoms Lab result
1 March 15 Fever, muscle aches, discolored/swollen lymph node Positive
2 March 15 Fatigue Negative
3 March 16 Fever, fatigue Missing
4 March 16 Headache Missing
5 March 16 Fever, muscle aches, discolored/swollen lymph node Missing
6 March 16 Fever, headache Positive
7 March 17 Fever, muscle aches, discolored/swollen lymph node Positive
8 March 17 Muscle aches Missing
9 March 17 Fever Missing
10 March 18 Fever Missing
11
Step 2: Describe the Outbreak by Person,
Place, and Time
The material in this video is subject to the copyright of the owners of the material and is being provided for educational purposes under
rules of fair use for registered students in this course only. No additional copies of the copyrighted work may be made or distributed.
Line List: Lists Individual Cases and Relevant Characteristics
4
A Point Source Outbreak—2
5
Common Source Outbreak—1
6
Common Source Outbreak—2
7
Propagated Outbreak—1
8
Propagated Outbreak—2
9
Maps of
Epidemics—1
11
Maps of
Epidemics—3
Source: https://blogs.plos.org/speakingofmedicine/2014/11/11/factors-might-led-
emergence-ebola-west-africa/ 12
Key Points
► The shape of an epidemic curve gives information about the source of the outbreak
13
Exercise: Draw an Epidemic Curve for this Line List
The material in this video is subject to the copyright of the owners of the material and is being provided for educational purposes under
rules of fair use for registered students in this course only. No additional copies of the copyrighted work may be made or distributed.
Clinical Evidence
Monkeypox Measles
► Common exposure
► What do cases have in common (that healthy people don’t)?
► Type of epidemic
► Point source? common source? propagated?
► Incubation period
3
Epidemiologic Evidence: Incubation Period
4
Incubation Period—1
► The incubation period is the time period from infection to symptom onset
► The latent period is the time period from infection to becoming infectious
5
Incubation Period—2
Median
Disease incubation period
Adenovirus 5.6 days
6
Laboratory ► Organism typing ► Immunological evidence
Evidence ► Molecular (e.g., genetic) ► Acute antibodies
► Microscopy ● That is, IgM
► Culture
► Drug resistance testing
8
Exercise: When Was Exposure?
9
Step 4: Risk Factor Study in a Defined
Population
The material in this video is subject to the copyright of the owners of the material and is being provided for educational purposes under
rules of fair use for registered students in this course only. No additional copies of the copyrighted work may be made or distributed.
The Basic Idea
► These may indicate the source of the 𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴 𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟 𝑖𝑖𝑖𝑖 𝑒𝑒𝑒𝑒𝑒𝑒𝑒𝑒𝑒𝑒𝑒𝑒𝑒𝑒
𝑅𝑅𝑅𝑅 =
disease—or activities that aid in 𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴𝐴 𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟 𝑖𝑖𝑖𝑖 𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢𝑢
transmission
► If the RR is much greater than one, then
the exposure is highly associated with the
disease
2
Calculating an Attack Rate
► The attack rate (AR) is calculated as the number of people in a group who developed
disease divided by the total number of people at risk for infection in that group
3
Outbreak in a Defined Population: Prairie Dog Exposure
► Attack rate in exposed Prairie dog exposure and clinical monkeypox among
children: childcare attendees
► 2/6 = 33.3%
Exposed to Number Number
► Attack rate in unexposed prairie dog sick not sick Total
children: Yes 2 4 6
► 2/12= 16.7%
No 2 10 12
► Relative risk:
► 33.3%/16.7% = 2
6
Step 4: Risk Factor Study in an Open
Population
The material in this video is subject to the copyright of the owners of the material and is being provided for educational purposes under
rules of fair use for registered students in this course only. No additional copies of the copyrighted work may be made or distributed.
Open Population
► What if we see cases but don’t know how many people were exposed or at risk?
► That is, inclusion in the study is based on disease status
► Then we cannot calculate the relative risk because the attack rate in the exposed is
unknown:
2
Case Control to the Rescue!
3
The Odds
► The odds is the percentage of a group that have had some exposure, divided by the
percentage that have not:
► In case-control studies, we calculate the odds of individual exposures in cases and controls
4
The Odds Ratio
► The odds ratio (OR) is the relative odds of having some exposure in cases and controls:
► Values above one mean the exposure is associated with disease (like the relative risk)
► The odds ratio only approximates the relative risk if the disease is rare
5
Outbreak in a Defined Population: Prairie Dog Exposure
► Odds of exposure among sick Prairie dog exposure and clinical monkeypox among
children childcare attendees
► 2/2 = 1.0
Exposed to Number Number
► Odds of exposure among not prairie dog sick not sick Total
sick children Yes 2 4 6
► 4/10= 0.4
No 2 10 12
► Odds-ratio of exposure in cases
vs. controls:
► 1.0/0.4 = 2.5
► The odds ratio of exposure in cases versus controls is equal to the odds of being a case if
you are exposed versus if you are unexposed
7
Why Does this Work?–2
8
Key Points
► Case-control studies allow us to measure risk even when we cannot determine how many
were at risk
► The odds ratio measures association by comparing the odds of exposure in cases and
controls
► Only approximates relative risk if the disease is rare
9
Exercise: What Is the Source of the Outbreak?
10
Step 5: Intervene and Report
The material in this video is subject to the copyright of the owners of the material and is being provided for educational purposes under
rules of fair use for registered students in this course only. No additional copies of the copyrighted work may be made or distributed.
Outbreak Response: Remove the Exposure—1
3
Outbreak Response: Recommend Behavior Change
“… EHOs demonstrated
proper handwashing and
environmental surface
sanitation procedures and
identified other strategies
operators could use to
reduce the likelihood of
cross-contamination.”
► The CDC MMWR is an excellent source for seeing the elements of a good report
6
Key Points
► Reports should clearly outline all elements of the outbreak investigation and the public
health response
7
Exercise: Recommend an Intervention
► In the previous exercise about the children who visited the zoo and acquired the plague,
what intervention would you recommend to the zoo?
8
Summary 1. Establish a case definition by person, place, and time—and
actively find cases (who?)
2. Build a line list of cases and use this to build epidemic curves
and maps that characterize the outbreak in space and time
(when and where?)