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ENZYMES
¨ biologic proteins that catalyze biochemical
reactions without altering the equilibrium point of
the reaction or being consumed or changed in
composition
Enzyme Nomenclature
¨ Practical or Trivial Name
¨ Systematic Name
Practical/Trivial name:
¨ According to the name of the substrate with the
addition of the suffix “ase”
Examples:
¤ Enzymes acting on lipids – lipase
¤ Enzymes acting on proteins - protease
Practical/Trivial name:
¨ According to the type of reaction they catalyzed.
Examples:
¤ Transfer of amino group from substrate to another -
transferase
¤ Transfer to phosphate group from a high energy
phosphate compound to its substrate - kinase
¤ Effect of hydrolysis on phosphate esters – phosphatase
¤ Removal of hydrogen atoms from its substrate -
dehydrogenase
Systematic Name
¨ According to the numerical designation given by
the Enzyme Commission (E.C.)
Examples:
¤ E. C. 1. 1. 1. 7 for lactate dehydrogenase
¤ E. C. 3. 2. 1 .1 for amylase
¤ E. C. 2. 6.1. 2 for alanine aminotransferase
¨ The first number defines the class to which the
enzyme belongs, while the next two numbers
indicate subclass and sub class to which the
enzyme is assigned. The last number Is a specific
serial number to each enzyme In its sub-class.
GENERAL CLASSIFICATION OF
ENZYMES:
1. Oxidoreductases - removal or addition of
electrons (reduction-oxidation ["redox"] reaction.)
Examples:
(a) oxidase - cytochrome oxidase
(b) dehydrogenase
lactate dehydrogenase (LDH)
malate dehydroenase (MDH)
isocitrate dehydrogenase (ICD)
GENERAL CLASSIFICATION OF
ENZYMES:
2. Transferase - catalyze the transfer of a
chemical group from one substrate to another
Examples:
(a) aspartate aminotransferase (AST)
(b) alanine aminotransferase (ALT)
(c) cretine kinase (CN) or
creatine phosphokinase (CPK)
(d) gamma glutamyl transferase (GGI)
(e) ornithine carbamyl transferase (OCT)
GENERAL CLASSIFICATION OF
ENZYMES:
3. Hydrolase - hydrolyze the splitting of a bond by the addition of water
(hydrolysis reaction)
Examples:
(a) esterases
acid phosphatase (ACP)
alkaline phosphatase (ALP)
cholinesterase (CLS)
lipase (LPS)
(b) peptidases
trypsin (PTS)
pepsin (PPS)
leucine aminopeptidase (LAP)
(c) glycosidase
amylate, kAMS)
amylo 1,6 glycosidase
galactoxsdases
GENERAL CLASSIFICATION OF
ENZYMES:
4. Lyases - remove groups from substrate without
hydrolysis, leaving only double bonds in the
molecular structure of the product.
Examples
(a) aldolases
(b) glutamate decarboxylase
(c) pyruvate decarboxyiase
(d) tryptophan decarboxylase.
GENERAL CLASSIFICATION OF
ENZYMES:
5. Isomerases - catalyzes the intramolecular
rearrangement of the substrate compound.
Examples:
(a) glucose phosphate isomerase
(b) ribose phosphate lsomerase
GENERAL CLASSIFICATION OF
ENZYMES:
6. Ligases (Synthetases) - joins two substrate molecules
together using the energy released from
hydrolyzing a pyrophosphate bond to a high-
energy phosphate compound.
TERMS ASSOCIATED WITH ENZYMES:
¨ Holoenzyme -an active substance formed by
combination of a coenzyme (cofactor) and
apoenzyme.
¨ Apoenzyme - the protein portion subject to
denaturation, in which the enzyme loses its activity.
Catalytically inactive protein when cofactor is
removed. They are heat labile and dialyzable.
¨ Isoenzyme - enzymes present !it an individual with
similar enzymatic activity but differ in their physical
biochemical and immunologic characteristics
TERMS ASSOCIATED WITH ENZYMES:
¨ Metalloenzyme - enzyrne whose metal ions are
intrinsically part the molecule such as catalases and
cytochrome oxidase.
¨ Proenzyme - inactive precursor of enzymes, also
referred to as zymogens
¨ Substrates - substances acted upon by the
enzymes which are specific for each of their
particular enzyme.
¨ Cofactors - these are non-protein
substance/compounds needed by an enzyme
before enzymatic activity can be manifested.
Cofactors are thermostable and dialyzable.
Cofactor
¨ Organic molecule - Coenzyme.
n It hastens enzymatic reaction but undergoes a change or
is consumed to another product.
n Examples:
¤ NAD – nicotinamide Adenine dinucleotide
¤ NADP - nicotinamide Adenine dinudeotide
phosphate
Cofactor
¨ Metal ion - Activator
¨ In such, the metal ion may serve as:
¤ a bridge to hold the substrate and enzyme together
¤ the primary catalytic center
¤ stabilizing agent In the conformation for catalytic activity.
Examples:
Amylase Cl , Br-
LDH Zn2
LipaseCa++
ENZYME KINETICS:
A. An enzyme (E) catalyses a reaction by combining with its
substrate (S) to create an enzyme—substrate complex (ES).
The enzyme-substrate complex according to Michaelis and
Menten can either dissociate back to E + S or breakdown to
product (P) and free enzyme (provided that the product has
a low affinity for the enzyme).
¨ THE MICHAELIS-MENTEN EQUATION GIVES THE
MEANS TO DETERMINE TOTAL ENZYME
CONCENTRATION IN SERUM AND OTHER BODY
FLUIDS
¨ Accurately describes virtually all single-substrate
enzyme-catalyzed reactions and many bisubstrate
reactions in which the concentration of one substrate
is constant throughout the course of the reaction.
Michaelis-Menten Constant
!!"# (#)
¨ V= %!&(#)
Where:
V = Velocity of the reaction
Vmax = Maximum velocity
S = Substrate concentration
Km = Michaelis-Menten constant
Types of Specificity
¨ Absolute Specificity – enzymes combine with only
one substrate and catalyzes only one corresponding
reaction
¨ Group Specificity – enzymes combining with all
substrates containing a particular chemical group
¨ Bond Specificity – enzymes are specific to chemical
bonds
¨ Stereoisomeric Specificity – enzymes that
predominantly combine with only one optical isomer
of a certain compound
Enzyme Specificity
¨ Emil Fisher's LOCK and KEY THEORY
¤ It is based on the rigid enzyme molecule into which
the substrate fits. The shape of the key (substrate)
must conform into the lock (enzyme).
Koshland's INDUCED FIT THEORY
¨ It is based on the attachment of a substrate to the
active site of an enzyme, which then causes
conformational changes in the enzyme. This theory Is
more acceptable because the protein molecule Is
flexible enough to allow conformational changes
and also allow some explanation on the influence of
hormones on enzymatic activity.
Types of Reaction Order:
1. Zero Order Reaction - is the rate of reaction linear
with time, independent of concentration of substrate
and directly proportional to enzyme concentration.
2. First Order Reaction - the rate of reaction is
determined by the concentration of substrate.as well
as of enzymes (the rate of reaction changes
continuously with time as the substrate is consumed.
Factors Affecting Enzyme Reactions:
¨ Enzyme concentration. - An increase in the
concentration of enzyme produces an increase in
the rate of reaction, provided that the other
conditions remain the same and that a constant
but excess amount of substrate Is present.
Meaning, if the amount of enzyme is doubled, the
reaction proceeds twice as fast.
Factors Affecting Enzyme Reactions:
¨ Substrate Concentration - An increase in the
concentration of substrate produces also an
increase in the rate of reaction, provided all other
conditions are kept constant However, the rate of
the reaction reaches a maximal value at a
particular concentration of substrate, and higher
concentrations of substrate do not result in
increased rate of reaction (Saturation kinetics).
Factors Affecting Enzyme Reactions:
¨ Temperature - The rate of any chemical reaction is
usually increased 2-3 times for every I0 degrees
Celcius rise in temperature.
Factors Affecting Enzyme Reactions:
¨ Hydrogen Ion Concentration or pH - Enzymatic
reactions proceed at their fastest rate at an
optimum pH and are considerably slowed or even
stopped at higher or lower pH values.
ENZYME INHIBITION:
¨ Competitive Inhibitor - These are substances that
compete with the substrate for enzyme binding
because they are chemically analogous to the
substrate and bind to the active sites of enzymes
ENZYME INHIBITION:
¨ Non- competitive Inhibitor. - These are substances
that do not resemble the substrate and bind to the
enzyme in areas other than the active site
ENZYME INHIBITION:
¨ Uncompetitive Inhibition – inhibits enzyme by
binding to the enzyme substrate complex
ENZYME INDUCTION:
¨ This phenomenon states that a certain enzyme has
the ability to adapt to their biochemical systems
Types of Enzyme Assays
¨ Endpoint Analysis
¤ Reaction is initiated by addition of substrate
¤ Reaction is allowed to proceed for a period of time
• Shinowara
Inorganic phosphate +
Beta-glycerophosphate
• Jones glycerol
• Reinhart
¤ Hyperparathyrodism
glutamate
AST
¨ L-aspartate + 2-oxoglutarate « oxaloacetate +
glutamate
Specimen Stability
¨ The half-life of AST is 17+ 5 hours while ALT has a
half-life of 47 +10 hours.
¨ Specimen
¤ AST is stable in serum at refrigerator temperature for up
to three weeks, indefinitely if frozen. ALT has the same
stability but markedly decreases with freezing.
¤ Specimens for AST and ALT are stable in whole blood for
up to 12 to 24 hours, but increase with time due to
release from red blood cells.
¨ Optimum pH: 7.4
AST (Aspartate Aminotransferase)
¨ Involved in the transfer of an amino group between
aspartate and α-ketoacids with the formation of
oxaloacetate and glutamate
¨ Has 2 isoenzymes fractions: cytoplasm and
mitochondrial
¨ Major tissue source: cardiac tissue, liver and skeletal
muscles
¨ Other sources: kidney, pancreas and RBC
¨ Reference values: (5-37 U/L)
Method of determination
¨ Karmen Method – pH 7.5; 340 nm
¨ Uses malate dehydrogenase and monitors the
G-6-PD
Glucose-6-PO4 + NADP 6-phosphogluconate
+ NADPH
Considerations in CK Assays:
¨ CK is light sensitive
¨ Anticoagulants (Oxalates and Fluoride) à inhibits
CK action
¨ CK in serum is very unstable and is rapidly lost
during storage à activity can be regenerated by
adding substances with –SH groups (cysteine,
dithiothreitol, mercaptoethanol)
¨ Exercise and IM injections causes CK elevations
CK levels are increased in:
¨ Progressive muscular dystrophy
¨ Poliomyelitis
¨ Acute psychosis
¨ Alcoholic myopathy
¨ Delirium tremens
¨ Hypothyroidism
¨ Malignant hyperthermia
¨ Acute cerebrovascular disease
¨ Trichinosis and dermatomyositis
Clinical Significance:
¨ Increases in CK MB may be due to:
¤ Cardiac or skeletal muscle damage
¤ Chronic myopathies
¤ Chronic renal failure
¤ Acute respiratory exertion
Clinical Significance:
¨ CK-BB is increased in:
¤ Smooth muscle injury (intestinal ischemia)
¤ Malignancies (prostate cancer, small cell carcinoma
of the lung, and intestinal malignancies).
Clinical Significance:
¨ Macro-CK2 is present in
¤ Malignancies
¤ Myocardial infarction (when Macro-CK2 is present,
it is usually associated with poor prognosis)
¤ MI (less than 5% of the causes)
Gamma- Glutamyl Transferase (EC
2.3.2.1) or GGT
¨ GGT catalyzes the transfer of glutamyl moiety
from peptides to amino acids, other peptides, or
water molecules.
¨ GGT are plasma membrane bound on cells that
has high secretory or absorptive properties (such
as liver, canaliculi cells proximal renal tubules,
intestinal epithelium, and prostate gland).
Gamma- Glutamyl Transferase (EC
2.3.2.1) or GGT
¨ Half life of GGT is about 7 to 10 days. In
alcoholic liver disease, half-life increases to 28
days.
¨ Measurement
¤ Szasz Assay
¤ GGT activity is measured by cleavage of chromogen
o-carboxyl p-nitroaniline from a glutamate modified
form of the compound.
GGT elevations
¨ Liver damage is the major source of GGT release.
¨ Smoking à Moderate smoking raises GGT levels
by 10%, while heavy smoking by 20%.
¨ Medications increase GGT levels up to five
times normal, these drugs include ethanol,
phenytoin, barbiturates, carbamazepine, and
valproic acid.
GGT decrease
¨ Pregnancy à First trimester of pregnancy causes
25% decrease in GGT levels
¨ Oral contraceptives reduce GGT by 20%.
Uses of GGT
¨ Evaluation of liver injury (primary use)
¨ Test for alcoholic abuse (It is abnormal in only
30%, 50% of those consuming excessive amounts
of alcohol. More often elevated in maintenance
drinkers rather than alcohol drinkers)
Lactate Dehydogenase (EG 1.1.1.27)
or LD
¨ LD is a zinc-containing enzyme and its activity is
part of the glycolytic pathway.
¨ LD is a tertramer of two active subunits, H (for
heart) and M (muscle). Combinations of the subunits
produce five isoenzymes.
¤ LD1 (HHHH; H4)
¤ LD2 (HHHM; H3M)
¤ LD3 (HHMM; H2M2)
¤ LD4 (HMMM; HM3)
¤ LD5 (MMMM; M4)
LD
¨ Normal electrophoretic pattern
¤ All bands of isoenzymes are low
¤ LD2 is always higher than LD1
¤ Increased Globulin
Hepatic Disorders
¨ Biliary Tract Obstruction
¤ Increased ALP, Bilirubin (B2), GGT, 5’-nucleotidase, LAP
Enzymes as Cardiac Markers
Enzymes for Myocardial Infarction
Appear in Disappearanc
Peak
Serum e
CK 4-6 hrs after 12-24 hrs 1-2 days
AST 6-8 hrs after 48 hrs 4-5 days
8-10 hrs
LD 72 hrs 7-12 days
after