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https://doi.org/10.1007/s00345-020-03080-8
ORIGINAL ARTICLE
Received: 30 August 2019 / Accepted: 3 January 2020 / Published online: 10 January 2020
© Springer-Verlag GmbH Germany, part of Springer Nature 2020
Abstract
Purpose The delivery of precision medicine is a primary objective for both clinical and translational investigators. Patients
with newly diagnosed prostate cancer (PCa) face the challenge of deciding among multiple initial treatment modalities. The
purpose of this study is to utilize artificial neural network (ANN) modeling to predict survival outcomes according to initial
treatment modality and to develop an online decision-making support system.
Methods Data were collected retrospectively from 7267 patients diagnosed with PCa between January 1988 and December
2017. The analyses included 19 pretreatment clinicopathological covariates. Multilayer perceptron (MLP), MLP for N-year
survival prediction (MLP-N), and long short-term memory (LSTM) ANN models were used to analyze progression to
castration-resistant PCa (CRPC)-free survival, cancer-specific survival (CSS), and overall survival (OS), according to initial
treatment modality. The performances of the ANN and the Cox-proportional hazards regression models were compared
using Harrell’s C-index.
Results The ANN models provided higher predictive power for 5- and 10-year progression to CRPC-free survival, CSS, and
OS compared to the Cox-proportional hazards regression model. The LSTM model achieved the highest predictive power,
followed by the MLP-N, and MLP models. We developed an online decision-making support system based on the LSTM
model to provide individualized survival outcomes at 5 and 10 years, according to the initial treatment strategy.
Conclusion The LSTM ANN model may provide individualized survival outcomes of PCa according to initial treatment
strategy. Our online decision-making support system can be utilized by patients and health-care providers to determine the
optimal initial treatment modality and to guide survival predictions.
* Byung Ha Chung
chung646@yuhs.ac Introduction
1
Department of Urology, Yonsei University College Patients with newly diagnosed prostate cancer (PCa)
of Medicine, 211 Eonju‑ro, Gangnam‑gu, Seoul 135‑720,
are faced with the challenge of selecting their preferred
Republic of Korea
2
option among multiple initial treatment modalities [1].
Selvas AI, Seoul, Republic of Korea
13
Vol.:(0123456789)
The generally available modalities for initial PCa treat- Material and methods
ment include active surveillance (AS), radical prosta-
tectomy (RP), radiation therapy (RT) with or without Study cohort and data collection
androgen deprivation therapy (ADT), and ADT alone.
Contemporary guidelines recommend treatments based Clinicopathological records were collected from 9864 con-
on the patient’s life expectancy and the average-risk of secutive patients diagnosed with biopsy-confirmed PCa
the disease; however, the guidelines do not provide a sin- at two high-volume institutions between January 1988
gle superior treatment option [2–4]. Furthermore, patients and December 2017. Data were retrieved from the SCaP
have a range of personal values, preferences, and baseline database, a longitudinal observational data repository that
function; therefore, preference-sensitive treatment selec- prospectively collects clinicopathological data and sur-
tion is a complex decision for patients as well as health- vival outcomes of patients diagnosed with PCa. Patients
care providers [4, 5]. were excluded from the analyses if they met the following
In the era of precision medicine, stratification of indi- criteria: (1) incomplete clinical data; (2) adjuvant treat-
vidual patients is emphasized to select the most appropri- ments that defied standard recommendations, (3) lost to
ate treatment modality. For PCa treatment, prediction of follow-up; or (4) unknown cause of death. The final cohort
cancer-specific survival (CSS) is a critical element in the consisted of 7267/9864 (73.7%) patients. The distribution
decision-making process. D’Amico et al. and Cooperberg of patients along the time frame according to initial treat-
et al. developed risk stratifications tools to predict CSS, ment modality is described in Fig. 1. The proportion of
with 80% discrimination in internal validation [6, 7]. How- patients who received RT was lower than that in West-
ever, these tools did not account for prognostic indicators, ern collectives, presumably due to the treatment selection
such as performance status or comorbidities that affect being made mostly by urologists and the widespread belief
survival and were unable to provide survival outcomes of Korean men that RT would result in more side effects.
according to treatment modality. Moreover, the calcula- This study was approved by the institutional ethics com-
tions used conventional linear models, such as survival mittee (3-2016-0190), which waived the requirement for
analysis and the Cox-proportional hazard model. Given the informed consent for patients from Gangnam and Shin-
nonlinear and multidimensional relationship among dis- chon Severance Hospitals. All study procedures complied
tinct prognostic factors in PCa biology, it would be ardu- with the principles of the 1946 Declaration of Helsinki
ous to determine survival outcomes using conventional and its 2008 update.
linear analyses alone. Pretreatment patient age, body mass index, Eastern
With improvements in computer-aided techniques, Cooperative Oncology Group (ECOG) performance score,
machine learning methods are playing an increasingly Charlson comorbidity index, hypertension, diabetes mel-
important role in cancer diagnosis and prognosis algo- litus, tuberculosis, liver cirrhosis, cerebrovascular disease,
rithms [8]. An artificial neural network (ANN) is a math- prostate-specific antigen (PSA) level, prostate volume,
ematical and computational method that has been applied PSA density, positive biopsy core number, % maximum
in several cancers, achieving higher predictive accuracy biopsy core involvement, clinical TNM stage, biopsy Glea-
for survival than conventional linear discriminant analy- son score, presence of second primary malignancies, and
ses [9, 10]. Given multiple effective treatment modalities type of initial treatment modality were reviewed. ECOG
for a particular stage of PCa and the complex and non- performance score is a measurement tool to describe
linear disease landscape of PCa, we hypothesized that an a patient’s level of functioning in terms of their ability
ANN model might better stratify individual patients for to care for themselves, daily activity, and physical abil-
selection of an optimal initial treatment modality. Such an ity. Clinicopathological variables were selected based on
ANN model may assist patients and health-care providers existing literature regarding significant prognosticators of
to make treatment decisions that are concordant with the PCa survival [2–4, 11, 12]. For accuracy of training, vari-
patient’s preferences and may ultimately minimize future ables with more than 25% of missing data were excluded.
regret and anxiety regarding the treatment selected. Initial treatment modalities were categorized as follows:
The aims of our study were to (1) develop and compare AS, RP, RT with and without ADT, and ADT alone. Selec-
three types of ANN models for predicting progression to tion of the initial treatment modality was based on surgeon
castration-resistant PCa (CRPC)-free survival, CSS, and discretion and patient preference. The survival status and
overall survival (OS) according to initial treatment modal- cause of death were collected using institutional medical
ity and (2) to construct an online decision-making support records or the National Cancer Registry Database. Death
system that provides probabilities of each survival end- was attributed to PCa if PCa was listed on the death cer-
point according to initial treatment modality. tificate as the cause of death, progressive metastatic CRPC
13
Fig. 1 Distribution of patients
along the study timeframe
according to initial treatment
modality
was present, or the patient died of complications of PCa output layer of the MLP-N model had one output node
treatment. representing the survival of each patient at the 5th or 10th
year. The LSTM model had an output layer with one out-
Study endpoints put node representing the probability of survival at each
time point. The training signal for each node represented
Co-primary endpoints were progression to CRPC-free sur- the probability of survival for the example at that time
vival, CSS, and OS analyzed by Cox-proportional hazards point. The adaptive learning and dropout rates were 0.002
and ANN models. The secondary endpoint was the develop- and 0.5, respectively, for all models.
ment of an online decision-making support system based on Fivefold cross-validation (CV) was implemented with
ANN analytics. each of the classifiers. After dividing the entire dataset
into five equal-sized groups, the first four groups were
Statistical analyses used as training data and the fifth as test data. The second
through fifth groups were then used as training data and
Development of the artificial neural network the first group as test data. This procedure was continued
until each group had been used as test data [16]. A scikit-
Three ANN models were developed according to predefined learn machine learning library and the TensorFlow deep
methods: the multilayer perceptron (MLP), the MLP for learning framework were used to perform the analyses.
N-year survival prediction (MLP-N), and the long short-
term memory (LSTM) models [13–15]. All models were
three-layer, feed-forward ANNs with sigmoid activations. Development of the Cox‑proportional hazard regression
The networks were trained using a standard back- model
propagation algorithm, which contained an input, hidden,
and output layers. The ANNs learned the relationships Cox-regression analyses were performed using the same
between independent and dependent variables. There were training set. Independent prognostic indicators associated
20 nuclear features in the input layer, while the numbers with each survival endpoint in the multivariate analyses
of hidden layers and nodes for MLP, MLP-N, and LSTM were entered into the Cox-regression model. The sum of
models were 2 and 64, 3 and 128, and 1 and 64, respec- the relative risks was used in the Cox-regression model to
tively. The output layer of the MLP model had 10 nodes predict survival outcomes according to treatment modality.
representing the survival rates from 1 to 10 years. The
13
Number 7267
For all ANN and the Cox-regression models, the predictive
Age (years) 68.0 (63.0–73.0)
performance was determined based on Harrell’s C-index, area
Body mass index (kg/m2) 24.1 (22.4–25.8)
under the curve (AUC), accuracy, sensitivity, specificity, and
PSA (ng/mL) 10.3 (5.9–26.4)
positive and negative predictive values at a particular cut-off
PSA density 0.3 (0.17–0.76)
value. The cut-off values were defined according to sensitiv-
Gleason score
ity analyses using Youden’s Index. Statistical analyses were
≤ 6 2330 (32.1%)
performed using SPSS® software (version 21.0; IBM Corpo-
7 1948 (26.8%)
ration, Armonk, NY, USA). Differences with a p value < 0.05
≥ 8 2989 (41.1%)
were considered statistically significant.
Positive biopsy core number (out of 12 cores) 3.0 (1.0–6.0)
Maximum core involvement (%) 50.0 (25.0–80.0)
Results Clinical T stage
≤ T2a 1628 (22.4%)
Patient characteristics
T2b-T2c 2744 (37.8%)
≥ T3b 2895 (39.8%)
The clinicopathological features of the patients at initial diag-
Clinical N stage
nosis are presented in Table 1. During the median follow-up
N0 6487 (89.3%)
period of 76.0 months (interquartile range 47.0–106.0), the
N1 780 (10.7%)
leading cause of death was PCa, followed by second primary
Clinical M stage
malignancy and cardiopulmonary disease (Table 2). The 5-
M0 6180 (85.0%)
and 10-year survival outcomes of our cohort were consistent
M1 1087 (15.0%)
with contemporary survival estimates.
Presence of a second primary malignancy 303 (4.2%)
Comorbidity
Comparison of predictive performances
Hypertension 2974 (40.9%)
Diabetes mellitus 1099 (15.1%)
The ANN models produced higher predictive performance
Tuberculosis 87 (1.2%)
than the Cox-regression model for all survival endpoints
Liver cirrhosis 25 (0.3%)
at both the 5- and 10-year time points. Among the ANN
Cerebrovascular disease 346 (4.7%)
models, the LSTM model achieved the highest C-indices
CCI
and AUC, followed by the MLP-N and the MLP models
0 4942 (68.0%)
(Table 3).
1 1343 (18.5%)
≥ 2 982 (13.5%)
Development of a web‑based decision‑making ECOG performance score
support system 0 6924 (95.3%)
1 75 (1.0%)
A decision-making support system was developed based on
≥ 2 268 (3.7%)
the LSTM model and is available at https://scapcalculator.
Initial treatment
yuhs.ac/. The schematic diagram of the system is shown
AS 221 (3.0%)
in Fig. 2. The system is comprised of: data input (Fig. 2a);
Radical prostatectomy 4701 (64.7%)
analytic service for survival endpoints (Fig. 2b); and visu-
Radiation therapy without ADT 230 (3.2%)
alizations (Fig. 2c). Visualizations included the patient’s
Radiation therapy with ADT 347 (4.8%)
Kaplan–Meier survival curves in comparison to the average
ADT alone 1768 (24.3%)
survival of patients in each NCCN risk category. The system
Follow-up period (months) 76.0 (47.0–106.0)
was built on a Flask framework and deployed on an Nginx
server, a remote and secure server with HTTPS protocols. Data are number (%) and median (interquartile range)
ADT androgen-deprivation therapy, AS active surveillance,
CCI charlson comorbidity index, CRPC castration-resistant prostate
cancer,ECOG Eastern Cooperative Oncology Group, PSA prostate-
Discussion specific antigen
13
Table 2 Causes of death and 5- and 10-year survival outcomes Our MLP and MLP-N models used a feature vector of
Deaths, number
aggregated measures to represent time-series data. In the
MLP-N model, training was performed without censored
Overall 1795 (24.7%) cases from a certain time point without survival data. The
Cancer-specific 1228 (16.9%) drawback of these models is that a large part of the temporal
Other-cause 567 (7.8%) information is lost. The LSTM model was a novel approach
Second primary malignancy 334 (4.6%) capable of accurately identifying temporal correlation in
Cardiopulmonary disease 90 (1.2%) time-series data. Since there was no need for aggregated
Cerebrovascular disease 41 (0.57%) measures, all data were presented to the ANN model and
Renal disease 19 (0.27%) their original time-dependent order was preserved. To obtain
Liver disease 17 (0.24%) the most accurate estimates from the ANN models, a fivefold
Self harm 11 (0.15%) CV was implemented with each of the classifiers [23]. The
Senility 4 (0.06%) CV provides an unbiased estimation; however, CV presents
Trauma 6 (0.08%) high variance with small samples in some studies [16]. To
Miscellaneous 34 (0.48%) overcome this limitation, a fivefold CV was chosen over the
Unknown 11 (0.15%) commonly used tenfold CV due to the relatively small sam-
Survival outcome (%) ple size, leaving more instances for validation and lower
5-year variance [16].
Cancer-specific survival 89.4% Contemporary guidelines for PCa treatment recommend
Overall survival 84.9% shared decision-making in which the patient and health-care
10-year provider participate actively in selecting the treatment option
Cancer-specific survival 76.4% that best fits the preference of the patient. Active involve-
Overall survival 68.1% ment of patients in decision-making and provision of bal-
Data are number (%) anced information on treatment options have been positively
associated with patient-reported outcomes, including per-
ceived quality of care and decision satisfaction [24, 25]. Sev-
The advantages of utilizing ANN in survival prediction eral decision-aid trials have shown modest positive effects
have been shown in several malignancies [9, 10, 17–19]. [26, 27]. However, decision-aids are underused for the lack
In these studies, various ANN models were utilized to of specificity for individuals. Indeed, a comprehensive tool
develop nomograms that outperformed conventional lin- that provides comparative data for different treatment modal-
ear models such as the Cox-proportional hazard model. ities for a specific patient may help create a more success-
Within the disease landscape of PCa, there is a complex ful shared decision-making. Given this unmet clinical need,
non-linear relationship between cancer and host in which our decision-support system was developed and is provided
certain prognosticators show excellent prognostic capa- online at no cost. In addition to the ease of accessibility and
bility in some populations but are suboptimal in others. usability, the prognostic indicators used are readily avail-
Thus, it would be reasonable to utilize ANNs employing able in everyday clinical practice, which supports the general
interconnected groups of nodes that resemble the extensive applicability of our system. We hope that our system may
network of neurons within a human brain. ANNs are par- be utilized during patient counseling to determine the opti-
ticularly suitable for solving complex non-linear datasets, mal initial therapy. Moreover, our system may also be used
such as PCa survival prediction, as they provide accurate to reaffirm the health-care provider’s treatment plan and to
performance in the presence of unreliability, wrong data, reduce future patient regrets regarding treatment decisions.
or measurement errors [17–20]. The strength of this study was the incorporation of
Several models have been developed to predict CSS out- detailed clinicopathological data and wide ranges of poten-
comes for PCa [6, 7, 21, 22]. D’Amico et al. and Cooperberg tial prognostic indicators which may have contributed to the
et al. developed risk stratification tools using Cox-regression favorable results. Of note, the patient and tumor character-
analyses, with 80% discrimination [6, 7]. Stephenson et al. istics of our cohort were similar to those found in West-
developed a nomogram based on competing-risk regression ern PCa patients, with an estimated median CSS consistent
analyses that outperformed previous models with 82% dis- with contemporary survival estimates. Most importantly,
crimination [21]. Korets et al. utilized the Kattan nomogram our models provided higher survival predictive perfor-
and obtained a C-index of 0.67 [22]. The current study was mance than previously reported tools, obviating the need for
the first to develop an ANN model to predict PCa survival patient risk grouping according to arbitrary classifications
endpoints, and the model surpassed the predictive accuracies formulated for average-risk patients. Indeed, such average
of all the models mentioned above. survival estimates according to risk category would likely
13
Table 3 Prognostic accuracies of the artificial neural network and the conventional linear models
Survival endpoint Time point Model C-index (95% CI) AUC (95% CI) Accuracy Sensitivity Specificity PPV NPV
CRPC progression 5-year Cox 0.885 (0.853–0.898) 0.905 (0.866–0.923) 0.847 0.829 0.849 0.425 0.974
MLP 0.912 (0.888–0.927) 0.933 (0.902–0.948) 0.858 0.882 0.854 0.445 0.983
MLP-5 0.910 (0.889–0.923) 0.932 (0.906–0.954) 0.856 0.878 0.853 0.453 0.982
LSTM 0.914 (0.890–0.928) 0.936 (0.906–0.949) 0.855 0.887 0.851 0.435 0.983
10-year Cox 0.885 (0.853–0.898) 0.894 (0.866–0.912) 0.834 0.779 0.872 0.803 0.856
MLP 0.913 (0.888–0.928) 0.917 (0.894–0.934) 0.844 0.886 0.816 0.760 0.914
MLP-10 0.904 (0.878–0.919) 0.915 (0.895–0.932) 0.848 0.856 0.843 0.782 0.898
LSTM 0.914 (0.890–0.928) 0.920 (0.899–0.936) 0.846 0.878 0.827 0.770 0.910
CSM 5-year Cox 0.817 (0.812–0.822) 0.852 (0.837–0.871) 0.771 0.787 0.770 0.323 0.963
MLP 0.849 (0.845–0.861) 0.857 (0.831–0.887) 0.811 0.755 0.823 0.475 0.943
MLP-5 0.853 (0.843–0.865) 0.890 (0.877–0.909) 0.817 0.835 0.815 0.385 0.973
LSTM 0.857 (0.846–0.865) 0.893 (0.876–0.911) 0.802 0.856 0.795 0.373 0.975
10-year Cox 0.817 (0.812–0.822) 0.825 (0.813–0.839) 0.758 0.759 0.760 0.733 0.785
MLP 0.850 (0.845–0.861) 0.822 (0.806–0.842) 0.752 0.714 0.803 0.820 0.693
MLP-10 0.846 (0.832–0.858) 0.858 (0.839–0.873) 0.788 0.792 0.783 0.762 0.814
LSTM 0.857 (0.846–0.865) 0.860 (0.846–0.874) 0.795 0.758 0.827 0.792 0.798
OM 5-year Cox 0.779 (0.764–0.799) 0.815 (0.794–0.846) 0.772 0.721 0.783 0.407 0.932
MLP 0.804 (0.789–0.824) 0.843 (0.818–0.873) 0.808 0.732 0.823 0.464 0.938
MLP-5 0.809 (0.791–0.831) 0.849 (0.820–0.881) 0.805 0.740 0.817 0.455 0.940
LSTM 0.815 (0.796–0.834) 0.856 (0.826–0.885) 0.795 0.768 0.811 0.442 0.945
10-year Cox 0.779 (0.764–0.799) 0.793 (0.774–0.809) 0.727 0.694 0.771 0.794 0.672
MLP 0.804 (0.789–0.824) 0.807 (0.788–0.826) 0.738 0.696 0.792 0.808 0.678
MLP-10 0.798 (0.785–0.819) 0.820 (0.805–0.840) 0.749 0.724 0.779 0.804 0.694
LSTM 0.815 (0.796–0.834) 0.830 (0.811–0.848) 0.964 0.751 0.779 0.811 0.715
not be appropriate for all patients, especially for those with during the later stages of treatment were unavailable. The
a complex disease presentation. In this regard, our system inclusion of comprehensive data regarding subsequent treat-
could be most useful for patients with atypical or unusual ments may allow for real-time survival prediction in which
disease features, such as advanced low-grade or localized the prognosis can be reassessed according to previous treat-
high-grade diseases. ment, comorbidities, and nutritional and performance sta-
Our study had several limitations. First, all patients tuses, as a result of which the patient could be allocated
included in this study were of Asian ethnicity. An external to certain multidisciplinary treatments. Lastly, data were
validation using multi-ethnic population data with “ethnic- collected over a long time span, during which treatment
ity” as an additional “node” would be warranted to ensure modalities and systemic agents had considerably improved.
similar sensitivity and specificity. Moreover, a population- Therefore, survival outcomes estimated by our ANN model
based database with a larger number of subjects may provide may not represent outcomes that would be expected in the
better generalizability. Albeit, we utilized our institutional current era.
data, which provided a comprehensive and high-quality data-
set, to maximize the predictive power. Second, information
on long-term treatment toxicity and side effects were not Conclusions
accounted for in the analysis. Preserving the quality of life
and accommodating patient treatment preferences are as An LSTM ANN model may provide individualized long-
important as identifying the treatment that would maximize term survival prognoses for patients diagnosed with PCa
the oncological outcome. Third, the main scope of this study according to initial treatment strategy. Our online decision-
was to determine the optimal initial treatment modality at making support system can be utilized in everyday clinical
the time of PCa diagnosis; therefore, predictions of survival practice by patients and health-care providers to counsel
13
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