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From the Department of Molecular Virol- ancer is caused by alterations in oncogenes, tumor-suppressor
ogy, Immunology, and Medical Genetics genes, and microRNA genes. These alterations are usually somatic events,
and the Human Cancer Genetics Program,
Ohio State University Medical Center, although germ-line mutations can predispose a person to heritable or famil-
Columbus. Address reprint requests to ial cancer. A single genetic change is rarely sufficient for the development of a
Dr. Croce at the Human Cancer Genetics malignant tumor. Most evidence points to a multistep process of sequential altera-
Program and Department of Molecular
Virology, Immunology, and Medical Ge- tions in several, often many, oncogenes, tumor-suppressor genes, or microRNA
netics, Ohio State University Medical Cen- genes in cancer cells.
ter, 385L Wiseman Hall, 400 W. 12th Ave., Tumors often possess cytogenetically different clones that arise from the initial
Columbus, OH 43210, or at carlo.croce@
osumc.edu. transformed cell through secondary or tertiary genetic alterations. This heteroge-
neity contributes to differences in clinical behavior and responses to treatment of
N Engl J Med 2008;358:502-11. tumors of the same diagnostic type. Apart from the initial clone and subclones,
Copyright © 2008 Massachusetts Medical Society.
tumors can also contain progenitor cancer cells, all of which constitute a spec-
trum of cells with different genetic alterations and states of differentiation. These
populations can differ in sensitivity to chemotherapy, radiotherapy, and other
treatments, making clinical management difficult. For these reasons, the initiat-
ing steps in the development of cancer are of considerable clinical importance and
are a priority in the development of rational cancer treatment.
An example of this concept is chronic myelogenous leukemia, which is initi-
ated by a reciprocal t(9;22) chromosomal translocation that fuses the ABL proto-
oncogene to the BCR gene.1,2 The fusion gene encodes an oncogenic ABL fusion
protein with enhanced tyrosine kinase activity. All leukemic cells carry this chromo-
somal alteration, which is why inhibition of the excessive tyrosine kinase activity
of the fusion protein by imatinib induces complete remission in most patients3,4;
when relapse occurs, the leukemic cells usually carry mutations in ABL that render
them resistant to the drug.5
The first evidence that cancer arises from somatic genetic alterations came from
studies of Burkitt’s lymphoma, in which one of three different translocations juxta-
poses an oncogene, MYC, on chromosome 8q24 to one of the loci for immunoglobulin
genes. Chromosomes 14q, 22q, and 2p — the translocation partners — each carries
enhancer elements in the immunoglobulin loci, thereby activating the juxtaposed
MYC oncogene (see Fig. 1 in the Supplementary Appendix, available with the full text
of this article at www.nejm.org).6-11 Since every malignant lymphocyte carries the
MYC translocation, deregulation of the MYC oncogene is probably the initiating event.
Second, transfection experiments have shown that mouse fibroblasts, when trans
fected in vitro with DNA from human cancer cells, acquire some of the properties
of malignant cells (i.e., transformation). The transforming activity of the DNA was
traced to a human homologue of the retroviral RAS oncogene. This oncogene bears
mutations that activate the transforming property of the RAS oncogenic protein.12,13
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molecular origins of cancer
Third, the cloning and characterization of the mors, for example, the Fos transcription protein
chromosomal breakpoints that are characteristic dimerizes with the Jun transcription factor to
of follicular lymphomas and some diffuse large form the AP1 transcription factor, and this com-
B-cell lymphomas14 have shown a juxtaposition plex increases the expression of several genes that
of the BCL2 oncogene to enhancer elements in control cell division.21,22
the immunoglobulin heavy-chain locus, resulting Chromosomal translocations often activate
in deregulation of BCL214,15 (see Fig. 2 in the transcription-factor genes in lymphoid cancers23
Supplementary Appendix). and sometimes do so in solid tumors (e.g., pros-
Fourth, in transgenic mice that carry an acti- tate cancer24; see Table 2 in the Supplementary
vated oncogene from a human tumor, cancers Appendix). In certain sarcomas, chromosomal
develop that resemble the human tumor.16,17 That translocations that result in fused proteins occur
these cancers appear only after a latent period consistently; in Ewing’s sarcoma, for example,
suggests that alterations in other genes must the EWS gene is fused with one of a number of
occur before progression to frank neoplasia can partner genes, resulting in aberrant transcrip-
occur — activation of a particular oncogene tional activity of the fused proteins (see Table 2 in
seems to be necessary but not sufficient for the the Supplementary Appendix). The EWS protein
development of overt cancer. is an RNA-binding molecule with a domain that,
when fused to a heterologous DNA-binding do-
main, can greatly stimulate gene transcription.
F unc t iona l Proper t ie s
of Onc o gene s Prostate carcinomas carry translocations of the
TMPR552 gene that fuse with and activate ERG1
Historically, transformation events in cancer have or ETV1. These genes are members of the ETS
been defined as initiation events (contributing to family of transcription regulators, which can ac-
the early stages of neoplastic transition) or pro- tivate or repress genes involved in cellular prolif-
gression events (referring to subsequent trans- eration, differentiation, and apoptosis. The fusion
formative processes). Oncogenes encode proteins of TMPR552, which has androgen-responsive pro-
that control cell proliferation, apoptosis, or both. moter elements, with an ETS-related gene creates
They can be activated by structural alterations a fusion protein that increases proliferation and
resulting from mutation or gene fusion,18 by jux- inhibits apoptosis of cells in the prostate gland,
taposition to enhancer elements,19 or by amplifi- thereby facilitating their transformation into can-
cation. Translocations and mutations can occur cer cells.24
as initiating events20 or during tumor progression,
whereas amplification usually occurs during pro- Chromatin Remodelers
gression. (Table 1 in the Supplementary Appen- Modifications in the degree of compaction of
dix lists oncogenes in tumors of different spe- chromatin play a critical role in the control of gene
cies, the methods used to identify them, their expression, replication, and repair and of chromo-
mechanisms of activation, and the functions of some segregation. Two kinds of enzymes remodel
their encoded products; Table 2 in the Supple- chromatin: ATP-dependent enzymes25 that move
mentary Appendix lists the molecularly charac- the positions of nucleosomes, the repeating sub-
terized chromosomal rearrangements in human units of the histones in chromatin around which
cancers.) The products of oncogenes can be clas- DNA winds, and enzymes that modify the N-ter-
sified into six broad groups: transcription factors, minal tails of histones.26 The pattern of histone
chromatin remodelers, growth factors, growth modification constitutes an epigenetic code that
factor receptors, signal transducers, and apopto- determines the interaction between nucleosomes
sis regulators. and chromatin-associated proteins.27 These inter-
actions, in turn, determine the structure of chro-
Products of Oncogenes matin and its transcriptional capacity.
Transcription Factors In acute lymphocytic leukemia and acute my-
Transcription factors are often members of mul- elogenous leukemia, the ALL1 (also named MLL)
tigene families that share common structural gene can fuse with 1 of more than 50 genes.
domains. To act, many transcription factors re- ALL1 is part of a very large, stable multiprotein
quire interaction with other proteins. In some tu- complex. Most of the proteins in the complex are
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The n e w e ng l a n d j o u r na l of m e dic i n e
components of transcription complexes28; others ticipate in wound healing. The sis oncogene of
are involved in histone methylation and RNA simian sarcoma virus is structurally similar to
processing. The entire complex remodels, acety- the gene for the β chain of PDGF.29 Overexpres-
lates, deacetylates, and methylates nucleosomes sion of PDGF induces the in vitro transformation
and free histones.28 The fusion of ALL1 with 1 of of fibroblasts containing PDGF receptors; it does
more than 50 proteins results in the formation not influence fibroblasts lacking these receptors.
of the chimeric proteins that underlie acute lym- This autocrine loop entails overexpression of
phoblastic leukemia and acute myelogenous leu- PDGF-β, the expression of the PDGF-β receptor,
kemia. ALL1 (MLL) fusion proteins deregulate and unregulated cell growth. An antibody against
homeobox genes (which encode transcriptions PDGF-β, an antibody against its receptor, or small
factors), the EPHA7 gene (which encodes a recep- molecules that block the receptor inhibit growth
tor tyrosine kinase), and microRNA genes such as of the transformed fibroblasts.
miR191. The WNT family of secreted glycoproteins
inhibits phosphorylation of β-catenin, which is
Growth Factors involved in cell–cell adhesion and the activation
Constitutive activation of a growth factor gene can of several signal-transduction pathways30 (Fig.
contribute to malignant transformation. Platelet- 1). The APC protein controls the activity of
derived growth factor (PDGF) consists of α and β‑catenin. In familial adenomatous polyposis,
β chains and is released from platelets during inactivating mutations of APC block the degrada-
coagulation.29 It can induce the proliferation of tion of β-catenin by inhibiting its phosphoryla-
various cell types and stimulate fibroblasts to par- tion. As a result, free β-catenin in the cytoplasm
Fz
Fz
LRP5/6 C β-Catenin N
Y654 LRP5/6
P α-Catenin
C β-Catenin N
BCL9-2
Nuclear
membrane
Draft 3 01/08/08
Author Croce
504 Fig #n engl1j med 358;5 www.nejm.org january 31, 2008
Title
ME
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DE
Artist SBL
AUTHOR PLEASE NOTE:
molecular origins of cancer
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molecular origins of cancer
cells, and another that carries the oncogenic ac- ment usually involves several hundred kilobases
tivity (e.g., ERG1).24 In cancers of B and T cells, and can contain many genes. Members of four
the most common mechanism of activation by different oncogene families are often amplified:
translocation resembles MYC deregulation, where- MYC, cyclin D1 (or CCND1), EGFR, and RAS.
as in myeloid cancers and soft-tissue sarcomas, MYC is amplified in small-cell lung cancer, breast
gene fusion is more common (see Table 2 in the cancer, esophageal cancer, cervical cancer, ovar-
Supplementary Appendix). ian cancer, and head and neck cancer, whereas
amplification of NMYC correlates with an advanced
Mutations tumor stage.50 The t(11;14) translocation juxta-
When an oncogene is activated by mutation, the poses CCND1 and immunoglobulin enhancer ele-
structure of the encoded protein is changed in a ments and is characteristic of mantle-cell lym-
way that enhances its transforming activity. Many phoma.14 CCND1 amplification also occurs in
types of mutation occur in oncogenes.43 Exam- breast, esophageal, hepatocellular, and head and
ples are the RAS oncogenes (KRAS, HRAS, and neck cancer. EGFR (ERBB1) is amplified in glio-
NRAS), which encode proteins with guanosine- blastoma and head and neck cancer. Amplifica-
nucleotide–binding activity and intrinsic guano- tion of ERBB2 (also called HER2/neu) in breast
sine triphosphatase activity. When mutated in cancer correlates with a poor prognosis.51 A
codon 12, 13, or 61, the RAS genes encode a monoclonal antibody against the product of this
protein that remains in the active state and con- oncogene (trastuzumab) is effective in breast can-
tinuously transduces signals by linking tyrosine cers that overexpress HER2/neu. Table 3 in the
kinases to downstream serine and threonine ki- Supplementary Appendix lists oncogenes that are
nases. These incessant signals induce continuous amplified in different types of cancer.
cell growth. Mutation of oncogenes in the RAS
family has been associated with exposure to envi- Oncogenes in Cancer Initiation
ronmental carcinogens. Mutations of KRAS are and Progression
common in carcinomas of the lung, colon, and When chronic myelogenous leukemia converts to
pancreas,43 whereas mutations of NRAS occur acute leukemia, the malignant clone acquires an
principally in acute myelogenous leukemia and additional t(9;22) translocation, an isochromo-
the myelodysplastic syndrome.44 some 17, or trisomy of chromosome 8. When fol-
Activating point mutations of the BRAF gene licular lymphoma becomes aggressive, the lym-
occur in 59% of melanomas, 18% of colorectal phoma cells often bear a t(8;14) translocation in
cancers, 14% of hepatocellular carcinomas, and addition to the original t(14;18) translocation.
11% of gliomas.45 Most of the BRAF mutations These findings support the hypothesis that most
change the valine residue at position 599 to glu- hematopoietic tumors and soft-tissue sarcomas
tamic acid (V599E). This change occurs within are initiated by the activation of an oncogene,
the kinase domain of the BRAF protein, resulting followed by alterations in tumor-suppressor genes
in a constitutively active protein that uncontrol- and other oncogenes. In contrast, most carcino-
lably stimulates the MAP kinase cascade, thereby mas are initiated by the loss of function of a tumor-
deregulating genes involved in cell proliferation, suppressor gene, followed by alterations in onco-
differentiation, and survival.45,46 In melanoma, genes and additional tumor-suppressor genes.52,53
BRAF mutations can precede neoplastic transfor- This multistep process in human cancer has also
mation; several types of nevi carry BRAF muta- been found in mouse models carrying activated
tions. oncogenes or inactivated tumor-suppressor genes,
in which the duration and aggressiveness of the
Gene Amplification disease can be changed by introducing into the
An example of gene amplification, which usually mouse genome the same sequential genetic altera-
occurs during tumor progression, is the amplifi- tions observed in human tumors. Methylation of
cation of the dihydrofolate reductase gene (DHFR) CpG islands located in the promoter regions of a
in methotrexate-resistant acute lymphoblastic leu- number of tumor-suppressor genes has also been
kemia.47 Amplification of DHFR is accompanied considered an important epigenetic step in the
by cytogenetic alterations that mirror amplifica- process of carcinogenesis. This topic will be cov-
tion of oncogenes.48,49 The amplified DNA seg- ered later in this series.
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The n e w e ng l a n d j o u r na l of m e dic i n e
* EGFR denotes epidermal growth factor receptor, FLT3 FMS-like tyrosine kinase 3, PDGFR platelet-derived growth factor
receptor, and VEGF vascular endothelial growth factor.
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molecular origins of cancer
Transcription RNA pol II and III Transcription RNA pol II and III
Pri-miRNA Pri-miRNA
Drosha Splicing
DGCR8
mRNA Intron
Pre-miRNA
Pre-miRNA
Exportin 5
Nuclear
membrane Exportin 5
Cytoplasm
Dicer
miRNA Dicer
miRNA
Translation suppression/degradation
mRNA
RISC RISC RISC
ORF
Figure 5. Mechanisms Involved in the Expression of Mature Exonic and Intronic MicroRNAs.
MicroRNA (miRNA) is transcribed mostly by RNA polymerase (pol) II and less frequently by RNA pol III. The primary transcript (pri-
microRNA) can be quite large. During the process of splicing, pri-microRNA is processed in the nucleus by an enzymatic complex that
includes Drosha and DGCR8, which leads to the formation of a smaller (70-to-100 nucleotide), second hairpin precursor named pre-
microRNA. This second precursor binds exportin-5 in the nucleus and is transported to the cytoplasm, where it is cleaved by Dicer into
mature microRNA. This mature microRNA, for the most part, binds to the 3' untranslated region of messenger RNA (mRNA) and, de-
pending on the degree of complementarity with the target RNA, can lead to the degradation or blockage of translation mRNA. Recent
studies suggest that translation blockage is accompanied by some
C O Ldegradation.
OR FIGURE
Draft 2 01/08/08
suppressor genes by down-regulating oncogenes. Author Drosha Croce nuclease complex to specific microRNA
Fig # 5
The function of microRNA genes depends Title on genes, including miR191, thereby enhancing the
their targets in a specific tissue. A microRNA ME processing of their microRNA precursors.65 The
gene can be a tumor suppressor if in a given cell DE miR191 gene is also up-regulated in numerous
Artist SBL
type its critical target is an oncogene, and it can types of solid cancers,64 suggesting that it is the
AUTHOR PLEASE NOTE:
be an oncogene if in a different cell type its targetFiguredownstream target
has been redrawn and type of signal-translocation path-
has been reset
Please check carefully
is a tumor-suppressor gene. ways involved in cancer. 65 MicroRNA genes func-
Issue date
Up-regulation of microRNA genes can be due tioning as tumor suppressors can be down-regu-
to amplification, deregulation of a transcription lated because of deletions, epigenetic silencing, or
factor, or demethylation of CpG islands in the loss of the expression of one or more transcrip-
promoter regions of the gene. For example, the tion factors.
ALL1 (MLL) fusion proteins of acute lymphoblas- The miR155 gene is overexpressed in diffuse
tic leukemia or acute myeloblastic leukemia car- large B-cell lymphoma,66 the aggressive form of
rying chromosome 11q23 translocations target the chronic lymphocytic leukemia,62 and in breast,
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The n e w e ng l a n d j o u r na l of m e dic i n e
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