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2019 16th IEEE Annual Consumer Communications & Networking Conference (CCNC)

LOCOMOBIS: a low-cost acoustic-based sensing


system to monitor and classify mosquitoes
Dinarte Vasconcelos Nuno Nunes Miguel Ribeiro Catia Prandi Alex Rogers
Madeira-ITI / LARSYS Madeira-ITI / LARSYS Madeira-ITI / LARSYS Madeira-ITI / LARSYS University of Oxford
Tecnico - U. of Lisbon Tecnico - U. of Lisbon Tecnico - U. of Lisbon University of Bologna alex.rogers@cs.ox.ac.uk
dinarte gv@hotmail.com njn@m-iti.org miguelsribeiro@gmail.com catia.prandi@m-iti.org

Abstract—Mosquitoes are considered one of the more severe as example, [6], [7]). However, the challenges of using expen-
worldwide health hazards. Their populations vary heteroge- sive microphones to acquire low amplitude mosquito sounds,
neously in urban and rural landscapes, and fluctuate with against potentially high background noise levels, poses a
seasonal or climatic trends and human activities. Thus, frequent
widespread high-resolution surveillance of mosquitoes is essential barrier to the widespread adoption of acoustic surveillance as
for both understanding their complex ecology and behavior, and a practical field technique.
also predicting disease risk and formulating effective control This paper presents LOCOMOBIS (LOw-COst MOsquito
strategies against mosquito-borne diseases such as malaria, BIoacoustic Sensor), a system emerged from the opportunity to
dengue and Zika. To this end, in this paper, we present LOCO-
MOBIS, a LOw-COst MOsquito BIoacoustic Sensor where the
develop a low cost acoustic device using sensitive microphones
wingbeat sounds produced by mosquitoes in flapping-wing flight to record specific wing sounds from mosquitoes in Madeira
are used to identify different species automatically. The sensor Islands, Portugal. The presence of Aedes aegypti mosquito,
has been deployed and tested in a real field deployment and our the main vector of dengue, and Zika, was detected for the
results demonstrate the practical feasibility of this low-cost non- first time in Madeira Islands in 2005 [8]. The presence of
intrusive approach for monitoring mosquitoes in places requiring
vector monitoring aimed at mosquito control or eradication.
the vector was then recorded along the southern coast of the
Moreover, to make the system more ubiquitous and easy to island, at low altitudes and in urban settings that provided an
interact with, we implemented a web-based application where it ecological niche for the establishment of this invasive species
is possible to check the collected data and the automatic species of mosquito [8], [9]. The Islands saw the first outbreak of
and gender classification. dengue since 1928 in 2012-2013. Since then the disease has
Index Terms—Biodiversity monitoring, Acoustic sensing, En-
been eradicated through the after concerted control measures
tomology
of the local authorities [8], [10].
I. I NTRODUCTION The main goal of LOCOMOBIS is to provide evidence of
the practical application of low-cost acoustic sensing technol-
Mosquitoes are considered to be a severe worldwide health ogy for detecting and monitoring mosquitoes. In summary, the
hazard [1]. In 2016, 91 countries reported a total of 216 key contributions of this paper are:
million cases of malaria, an increase of 5 million cases over the
previous year, resulting in 445,000 global deaths [1]. Mosquito i) the development of a low-cost acoustic sensor, integrating
populations vary heterogeneously in urban and rural land- a microphone and environmental sensors, that can be used
scapes, fluctuating not only with seasonal and climatic trends, to classify a variety of species and gender of mosquitoes
but also with human activity [2], [3]. Frequent, widespread, and also applied to other taxa;
and high-resolution surveillance of mosquitoes is essential ii) reporting on the field deployment of the sensors to collect
for understanding their complex ecology and behaviour [4]. data and classify mosquitoes next to existing manual
This is fundamental for predicting disease risk caused by traps, validating the system in real-word conditions,
the presence of mosquitoes and formulating effective control considering the different variables involved in a non-
strategies against mosquito-borne diseases such as malaria, controlled environment;
dengue and Zika [5]. iii) the design and implementation of an easy-to-use web-
The paucity of ecological data continues to remain a signif- based application that allows users to validate the
icant bottleneck in mosquito vector-borne disease control ef- recorded audio detections and to visualize the spectro-
forts, particularly in resource-poor areas, since current surveil- grams, enabling the mosquitoes classification results to
lance techniques are time consuming, requiring specialists to be visualised (in particular species and gender).
place traps and to assess the species of mosquitoes caught The rest of the paper is organized as follows. The next
in them. One promising candidate to address this issue is section presents relevant related work. Then, we present the
acoustic monitoring, where the wingbeat sounds produced LOCOMOBIS acoustic sensor, detailing its architecture and
by mosquitoes in flapping-wing flight are used to identify components. We then show how our infrastructure was de-
different species (and gender) in the field automatically (see ployed in a real field study, discussing the system validation

978-1-5386-5553-5/19/$31.00 ©2019 IEEE


2019 16th IEEE Annual Consumer Communications & Networking Conference (CCNC)

and results. Finally, we conclude the paper with final remarks have investigated this critical topic, exploiting the recorded
and future work. sound of record mosquitoes wing-beat frequency, using both
microphones and optical sensors.
II. R ELATED WORK
The authors of [7] use a probabilistic model of a mixture of
A. Mosquitoes detection and monitoring complex Gaussians to create a collection of power spectral
In recent years, a number of different strategies have been densities that can capture the characteristics of the wing-
investigated in order to detect mosquitoes. A few researchers flap sound that a flying insect produces, providing efficient
have studied the concept of detecting mosquitoes without representations of the species’ audio fingerprint.
additional sensors, using Twitter as a social sensing tool In [20], the authors implement an artificial neural network
for active surveillance of dengue fever [11]. In addition, the classifier to recognize five species of mosquitoes, recording
authors of [12] describe their strategy to use images acquired the wingbeat frequencies with a photosensor and a transient
by drones to identify certain mosquito breeding sites. waveform recorder program. They obtain an accuracy of
Due to the huge diffusion of smartphones, a few recent 72.7% (on average) with peaks of 89%.
works investigated the possibility to take advantage of these Different machine learning methods are studied in [21]. The
smart devices for vector control, exploring camera [13] and/or statistical analysis of the results suggest that the expectation
audio [14]. In addition, smartphones have been also exploited maximization algorithm for Gaussian mixture model (EM-
by authors of [15] who investigate the use of acoustic data GMM) method provides a higher accuracy of classifying the
acquired by low cost smartphones on species-specific mosquito mosquitoes species and gender than other algorithms such
wingbeat sounds, and spatio-temporal metadata (time and as artificial neuron network model (ANN) and the nearest
location of the recording) to enable rapid, non-invasive species neighbour model.
identification. A recent work [22] describes a prototype software exploiting
In the literature, it is possible to find different works that a Mel-frequency cepstral coefficients (MFCC), to process the
exploit optical sensors to detect mosquitoes ( [16]–[18]). The recorded data, obtain the sound features, and support vector
authors of [16], besides creating an infrastructure to detect machine (SVM) classifier, targeting female Culex and Aedes
mosquitoes using an optical sensor and a digital high-speed aegypti mosquitoes. The authors show that with SVM using
video camera model, also enabled the system to apply a lethal radial basis function (RBF) kernel, they obtained an accuracy
dose of energy into those insects whose identification profile of 75.55% (applying 11 filters).
is within a database. The system focused on Diaphorina citri Authors of [23] address the problem of insect classification
and Anopheles stephensi species of mosquito. The authors using a one-class classifier (where the learning is performed
of [17] and of [18], used a similar approach, exploiting an only with positive examples - target class), obtaining an
optical sensor to detect mosquitoes. In [18], the output of the accuracy of 0.87 in identifying the Aedes aegypti species.
electronic board feeds into a digital sound when an insect flies Another interesting work investigates the use of ma-
across the laser beam, partially occlude the light, causing small chine learning techniques together with hardware-software
light fluctuations. The study investigated in [19] describes co-optimization of the classification algorithm on low-power
the use of surface acoustic wave technology to detect the embedded hardware [24]. They tested the classification using
frequency of female and male Aedes aegypti mosquito. benchmark samples representing three species of mosquitoes,
After analysing the pros and cons of the main techniques delivering 80% classification accuracy considering the specific
to detect mosquitoes investigated in the previous studies, in species.
particular the optical sensor approach, we decided to use an All the presented studies provided interesting results. How-
acoustic sensor with a sensitive microphone to record specific ever, the different approaches were evaluated in scenarios
wing sounds from mosquitoes for the following key reasons: with a controlled environment, without providing results from
(i) using a microphone, we can detect the mosquitoes over a a real-world test, where data will also include wind noise
greater range compared with an optical sensor which the insect and ambient sounds. In this paper, we present a strategy to
must pass through it; (ii) with a microphone it is possible to deal with different variables occurring in a real-word field
measure the power of the captured signal; (iii) with the sound deployment as detailed in the next sections.
recorded through the microphone we are able to calculate the
III. T HE LOCOMOBIS ACOUSTIC SENSOR
spectrogram and extract some valuable information, such as
the flight pattern of each mosquito species (an optical sensor A. Architecture
is more used as a trigger to activate some mechanisms). Figure 1 shows an overview of the monitoring system
architecture. The LOCOMOBIS acoustic sensor is composed
B. Wing-beat frequency classifications
of a layer of sensors (microphone, temperature, and relative
Classification of mosquitoes is fundamental to vector con- humidity) and the open source hardware Particle Photon1 mi-
trol. In 1945, researchers at the Cornell University Medical crocontroller, that combines a powerful STM32 ARM Cortex
College investigated the concept of recording a mosquito M3 microcontroller and a Cypress Wi-Fi chip. It connects
wing-beat frequency using a microphone in order to classify
the different species [6]. Since then, a number of studies 1 https://www.particle.io/products/hardware/photon-wifi-dev-kit
2019 16th IEEE Annual Consumer Communications & Networking Conference (CCNC)

Audio
Capture
Data
Authenticator
Sensor Particle Cloud
TCP
Readings

HTTP POST
Server +
Database

X X

Microphone + Sensors

Fig. 1. LOCOMOBIS architecture.


Fig. 2. Overview of the LOCOMOBIS sensor, including the main modules.

all the sensors, and it is responsible for collecting the re-


sulting data (i.e., sensor readings and audio captures). The recorded sample, and check if it falls within the fre-
data processing is performed by the microcontroller, so we quencies defined in the configuration (a maximum of 5
optimize the code (arrays, variables, functions) according to species);
the available memory space for the dynamic allocations. All 3) record the sensor data to the microSD card, including
data is recorded locally to a microSD card as backup, including the WAV file with 8 seconds of audio recording and all
the captured frequencies that do not trigger the recording, the frequencies that have been detected over time;
to allow analysis of the predominant frequencies present in 4) if an Internet connection is present, send the recorded file
each location. Then, data (in JSON format) is sent using a and temperature/humidity data every x minutes (with x
POST request, authenticated with JSON Web Token (JWT) for defined in the configuration file) to the server otherwise
security, together with the meta-data that describes the sample, store locally;
including: the timestamp; the location ID; the device ID; the 5) update date and time once a day if an Internet connection
digital filter used; the detected frequency; the set frequency is available, otherwise continue with the internal clock
and bandwidth; the number of bits used per sample; and the of the RTC (Real Time Clock) module.
sampling rate. Figure 2 presents an overview of the different modules
To manage the acoustic sensor remotely, we used Particle composing the LOCOMOBIS sensor. This prototype has a
Cloud2 , a full-stack Internet of Things (IoT) device platform sleep mode energy consumption of approximately 1 mA,
that allows a secure and reliable connection of devices to during which no data processing is performed. During normal
the web. It provides an auto-scaling and redundant cloud operation, it consumes around 60 mA and when recording on
infrastructure, real-time event streams, and a REST API to the microSD card, it reaches 80 mA. The interaction with
interact with the devices (i.e., sending commands, checking the server when data is sent reaches a maximum energy
the device state) and to publish data. All messages between consumption of 130 mA. Using a lithium-ion polymer battery,
the devices and the Particle Cloud are protected by strong the lifetime of the sensor ranges from 20 hours (full processing
encryption and anomaly detection (frequent identity checks mode) to 1600 hours (sleep mode). It is difficult to make an
and fast-rotating session keys help mitigate man-in-the-middle estimate of the average consumption as it is dependent on the
attacks). Traffic to Particle’s API is intelligently load balanced number of detections, how many times it accesses the microSD
to mitigate brute-force attacks, and every Particle server is card and the server.
behind a strictly firewalled private network with intrusion
detection to avoid unauthorized access.
The main loop that controls the device, depending on the B. Sound Detection, Recording and Storage
current state of the system, is composed by the following steps:
In this work we used the uncompressed audio that captured
1) capture a small sample of data and check the magnitude
the real sound waves and converted to digital format without
threshold;
any further processing, this means that recordings are exact
2) apply fast Fourier transform (FFT) and quadratic in-
copies of the original source audio.
terpolation to find the predominant frequency in the
Our acoustic sensor uses a low-noise omni-directional mi-
2 https://www.particle.io/ crophone capsule because of the very good low noise speci-
2019 16th IEEE Annual Consumer Communications & Networking Conference (CCNC)

fication. The Primo EM1723 provides a good low frequency


extension and includes a case mounted field effect transistor
(FET). The output signal is AC coupled (current variation)
and is fed to the amplifier through a large-value DC blocking
capacitor. The pull-up resistor is determined (4.7 µF) such
that the output impedance of the device is set to bias the
voltage on the FET buffer to a safe region. The time-varying
capacitance is used to modulate the gate voltage on a built-in
FET which buffers and amplifies the signal. The microphone
is a transducer that converts sound into electrical signals with
a SNR (signal-to-noise ratio) of 80 dB with a self-noise of 14
dBA and the residual noise of -108 dB.
The Photon’s microcontroller includes the capability for
measuring signals and converting them with the analogue-
to-digital converters (ADC). We use a programmable gain Fig. 3. Web visualization of recorded audio detections, together with the
amplifier as a rail-to-rail output device to increase the gain spectrogram.
and improve sound input. Because of the in the wild nature
of our deployments it is necessary to use a microphone with
an amplifier. To avoid over-exposure or clipping we used a
differentiator filter that works as an active bandpass filter with
an offset. A capacitor feedback and a input resistor is added to
have a better attenuation at higher frequencies and achieve a
closed-loop stability, respectively. So with this improvements
the filter acts like a differentiator amplifier at low frequencies
and an amplifier at high frequencies giving much better noise
rejection. In the second stage a second order Sallen key high
pass filter is used due to its simplicity and efficiency, besides
having unit gain and low signal lag, implemented with the
purpose of increasing the cut frequency for the low frequencies
through a slope of 40 dB/dec.

C. Data Aggregation and Visualization


Fig. 4. Classification of each species based on frequency.
The server side component of the project runs on Node.js
and provides APIs for retrieving and visualizing the recorded
data. The Goertzel algorithm is run on the server for the
purpose of drawing the spectrogram and detecting the peaks lab colony established from captures collected in Funchal in
at which the detected frequency occurs. The API enables the 2017. The mosquitoes were kept in an environmental room
development of different client applications for visualizing simulating natural conditions, with 77±10 % relative humidity
information regarding the detected mosquitoes. Figure 3 shows and the floating temperature of 22-30 °C. The mosquitoes
one example of a visualization, where the users can search, of each species were placed in individual traps where mesh
check and download the collected recordings and visualize caps were placed and offered a 20 % sucrose solution to feed
the spectrogram with the classified species and gender. The them. All mosquitoes used in these experiments were 7-25
API and the web-based application makes our platform and days old. For the three species, we put the sensors inside the
the collected data, more ubiquitous, accessible and easy to traps and the tests carried out consisting of 12 specimens for
interact with. Aedes aegypti, 7 specimens for Culex and 4 specimens for
Culiseta. In this first phase, we used the Audacity4 software
IV. S YSTEM VALIDATION AND R ESULTS to obtain the spectrogram of the collected sound files and
A. Laboratory Tests analyze the frequency in addition to the data collected by
We conducted a laboratory study in the facilities provided by the microcontroller. In order to compare the accuracy of the
the Natural History Museum of Funchal (Mosquito Lab) where results, we collected data from our acoustic sensor and an
three species of mosquitoes were recorded for testing to find iPhone, using the application SignalScope5 , obtaining a good
out their dominant frequencies. The species used for this study match.
were Aedes aegypti, Culex and Culiseta which came from a Figure 4 shows the classification for each mosquito species

3 http://micbooster.com/primo-microphone-capsules/8-primo-em-172- 4 https://www.audacityteam.org/

z1.html 5 https://www.faberacoustical.com/apps/mac/signalscope/
2019 16th IEEE Annual Consumer Communications & Networking Conference (CCNC)

based on the fundamental frequencies, using FFT (and a post- 


detection user’s defined bandwidth of 50Hz). 

(TGSWGPE[
M*\

These frequencies were detected with a temperature of 26 
°C and 88 % humidity, in order to reproduce, in the laboratory 
tests, the average season conditions of the island. This is 

important to take into account since previous studies have 
demonstrated that the frequency can be (slightly) influenced 
        
by the temperature [25]. a) 6KOG
U

B. Real-World Deployment 

(TGSWGPE[
M*\

In order to test the LOCOMOBIS system, we deployed 
the acoustic sensors in a real-world scenario in the Madeira 
archipelago, located at around 1,000 km from the mainland 

and around 500 km from the northern African coast. The

climate is temperate Mediterranean, with little temperature 
        
variation throughout the year. b) 6KOG
U
Aedes aegypti was first identified on Madeira in 2005, in
Santa Luzia parish of the capital Funchal [8]. Since then, a Fig. 5. Observation of the noise in the different types of environments:
a) laboratory detection (noise doesn’t influence the measurement of the
mosquito surveillance system based on ovitraps (traps that frequency); b) outdoor environment (noise is present at low frequencies
collect eggs by mimicking breeding sites) was established to making mosquito detection difficult).
monitor the presence and the abundance of the vector on the
island [8]. In September 2011, cross-sectional entomological
surveys were carried out using a total of 273 ovitraps dispersed
throughout Madeira (253 ovitraps) and Porto Santo islands
(20 ovitraps). Results showed that the mosquito population
had expanded to the west and east of Funchal city. After
the onset of the outbreak in October 2012, the surveillance
network was reinforced and, currently, mosquito activity is
monitored by 141 ovitraps. These traps are distributed mainly
along the south coast of the island and in selected areas
such as harbors, the airport, healthcare facilities and potential
transmission zones.
In this context, our sensors deployment was done during the
month of August 2017, in conjunction with the Natural History
museum of the capital city of Funchal and the local supervision
of the regional health authorities (IASaude) both involved
in log-term surveying efforts. The selection of places where
install our system was done through IASaude that provided
Fig. 6. Probability of encountering mosquitoes in different parts of the city
the entomological bulletins of the Aedes aegypti mosquito. of Funchal
The sensors were deployed alongside the ovitraps in open and
public environments, such as the residence of the University of
Madeira, the parish of Santa Luzia which saw the first outburst C. Initial Results
of Dengue in 2013.
Applying the results of the tests carried out in the laboratory Figure 6 shows the probability of encountering mosquitoes
(indoor location) to the outdoor locations, it raised the need in different parts of the city of Funchal based on the total
to implement criteria to adjust the sought frequency of each number of detections, where the acoustic sensor was placed
species, with the main objective of detecting the presence near the traps over 7 to 25 days. In particular: 26.5% in
of mosquitoes according to the time of the day and to the Rua de Comboio; 8.6% in Santa Luzia; 11.8% in Rua da
climatic conditions. The new frequency values are subject to a Mouraria; 53.1% in Rua de Santa Maria. The probabilities
certain user-defined bandwidth (default of 50Hz) to encompass were calculated taking into account the total number of detec-
a larger frequency range for each species. Figure 5 shows the tions. Moreover, correlating the environmental data collected
comparison between a laboratory sample and one obtained in by our sensors together with the sensed data, it possible to
the outside environment where it is possible to observe a much assess that the greater number of detections of mosquitoes
more significant presence of noises. To mitigate this issue, we occurs when the humidity is between 50 - 60% and the
applied a noise reduction technique with smoothing functions temperature 26 − 30◦ C, and that mosquitoes are more active
in a scrolling window to improve the classification. in the afternoon.
2019 16th IEEE Annual Consumer Communications & Networking Conference (CCNC)

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