Virus detail

Virus name: hCoV-19/Indonesia/JK-GS-GSILab-675877/2021

Accession ID: EPI_ISL_4115895
Type: betacoronavirus
Clade: GK
Pango Lineage: AY.23 (Pango v.3.1.11 2021-08-24), Delta (B.1.617.2-like) (Scorpio)
AA Substitutions: Spike D614G, Spike D950N, Spike E156G, Spike F157del, Spike L452R, Spike P681R, Spike R158del, Spike
T19R, Spike T478K, Spike V1264L, M I82T, N D63G, N D377Y, N G215C, N K38I, N R203M, NS3 S26L, NS7b
T40I, NSP2 P200L, NSP3 A488S, NSP3 K401E, NSP3 K1130N, NSP3 P1228L, NSP3 P1469S, NSP3 T678I, NSP4
T492I, NSP4 V167L, NSP6 T77A, NSP12 G671S, NSP12 P323L, NSP13 P77L, NSP14 A394V, NSP15 E266G
Variant: VOC Delta GK/478K.V1 (B.1.617.2+AY.x) first detected in India
Passage details/history: Original
Sample information
Collection date: 2021-08-20
Location: Asia / Indonesia / Jakarta
Host: Human
Additional location
information:
Gender: Female
Patient age: 47
Patient status: unknown
Specimen source: Nasopharygeal swab and oropharyngeal swab
Additional host information:
Sampling strategy:
Outbreak:
Last vaccinated:
Treatment:
Sequencing technology: Nanopore GridION
Assembly method: Medaka 1.4.3
Coverage: 374x
Comment: Stretches of NNNs (4.44% of overall sequence). Gap of 13 nucleotides when compared to the reference WIV04
sequence.
Institute information
Originating lab: Genomik Solidaritas Indonesia Laboratorium
Address: Jl. R.A. Kartini, RT.11/RW.4, Cilandak Bar., Kec. Cilandak, Kota Jakarta Selatan, Daerah Khusus Ibukota Jakarta
12430, Indonesia
Sample ID given by the
originating laboratory:
Submitting lab: Genomik Solidaritas Indonesia Laboratorium
Address: Jl. R.A.Kartini, RT.11/RW.4, Cilandak Bar., Kec. Cilandak, Kota Jakarta Selatan, Daerah Khusus Ibukota Jakarta
12430
Sample ID given by the
submitting laboratory:
Authors: Pratiwi Srikandi Yudhastari, Neng Hilma Hamidah, Himawan Masyhuri, Vania Gavrila Wikasa, Carissa Sintca
Wijaya, Dhahlia Agustina Cahyono, Gracia Felias Enos Korompis, Annisa Muthiah Sukirman, Anuraj Shankar,
Louisa Markus, Meutia Ayuputeri Kumaheri, Ariel Pradipta
Submitter information
Submitter: Sukirman, Annisa Muthiah
Submission Date: 2021-09-13
Address: RA. Kartini No.34 12440 Jakarta

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