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Parasitic weed species of the genus Orobanche are a serious threat for the production of several crops in Europe, Africa
and Asia. In contrast to other broomrape species of agronomic importance, O. ramosa (branched broomrape) has a
broad host range and in Europe particularly affects hemp, tobacco, tomato and, in recent times, oilseed rape. Two sep-
arate sets of experiments investigated the effect of two populations of O. ramosa on nine tobacco cultivars grown in
Europe and belonging to the three major tobacco types: Virgin (flue-cured), Burley (light air-cured) and dark air-cured
under standardized glasshouse conditions. The two broomrape populations were discriminated by means of polymor-
phic DNA fragments obtained by PCR of the intersimple sequence repeat regions (ISSRs). The Orobanche populations
exhibited different levels of pathogenicity but all various tobacco cultivars were susceptible. Dark air-cured tobacco
cultivars were the least susceptible to both broomrape populations. Virgin and Burley tobacco cultivars were more
susceptible to one population of O. ramosa.
Keywords: ISSR-PCR, microsatellites, Nicotiana tabacum, parasitic angiosperm, resistance, tobacco cultivars
About 328 600 t of tobacco are produced in Europe DNA amplified by PCR (Schneeweiss et al., 2004). Genetic
from an area of 122 600 hectares. The three major types variability of Orobanche has so far been investigated by
are flue-cured tobacco (Virgin, 40·4% of production), fingerprinting techniques such as randomly amplified poly-
light air-cured tobacco (Burley, 24·8% of production) and morphic DNAs (RAPDs; Paran et al., 1997; Gagne et al.,
dark air-cured tobacco (9·9% of production) (Anonymous, 1998; Roman et al., 2001). Another recent approach is
2003). Since cultivation of hemp and tobacco began in the use of intersimple sequence repeats (ISSRs). With
Europe, O. ramosa has spread and caused sporadic prob- ISSRs, it is possible to identify polymorphisms between
lems (Sauerborn, 1991; Demuth, 1992; Holm et al., microsatellite regions. These regions are hypervariable,
1997). However, during the last decade, the incidence and short stretches of DNA and characterized by mono-, di- or
severity of O. ramosa have increased and the parasitic trinucleotide repeats that are the targets for the ISSR-
weed has become a persistent problem. Without efficient primers (Nagaoka & Ogihara, 1997; Wolfe & Randle,
control, every O. ramosa plant can produce 100 000– 2001). Such DNA polymorphisms elucidated by ISSR-
500 000 durable and very small seeds (diameter 0·3 mm), PCR enabled Benharrat et al. (2002) to characterize
leading to a dramatic increase of the Orobanche seed several Orobanche species and even populations.
bank in the soil (Sauerborn, 1991). Humans, machinery, The aim of this study was to characterize two popula-
water or wind can easily disperse these seeds. tions of O. ramosa and evaluate their pathogenicity to dif-
Another obstacle to effective control is the genetic vari- ferent tobacco cultivars by ISSR-PCR.
ability of O. ramosa, which threatens different hosts
(Musselman & Parker, 1982) and control strategies (Dha-
napal et al., 1996). In the past, some effort was made to
Materials and methods
describe O. ramosa populations by means of morpholog-
Plant material
ical features (Gilli, 1966). Based on these characters it is
possible to distinguish distinct populations. However, Seeds of O. ramosa were collected in August and Septem-
because of its parasitic lifestyle, various features commonly ber 2002 from two broomrape-affected tobacco fields (all
used in plant taxonomy are highly reduced in Orobanche, Virgin cultivars) in the Rhine valley, southwest Germany
so that population descriptions can have limited reliability (Fig. 1). The sampling sites were Forchheim (near Karl-
(Roman et al., 2001). These difficulties can be overcome sruhe) and 30 km north of Neupotz (near Speyer). For
by the use of molecular techniques. For molecular phylog- molecular discrimination of these two branched broom-
enies, some researchers have used sequence data of the rape populations, namely Karlsruhe and Speyer, O. ramosa
internal transcribed spacers (ITSs) of nuclear ribosomal originating from Fadasi, Gezira State, Sudan (collected in
Figure 1 Tobacco crop in the Rhine valley between Karlsruhe and Freiburg (southwest Germany) affected by Orobanche ramosa (arrowed).
March 2002), was used as an outgroup. In all cases, six (Eppendorf ) with the following programme: an initial
plant samples per location were studied. denaturing step 94°C (1 min); 35 cycles of denaturing (94°C,
Nine different tobacco cultivars were used as host plants: 1 min), annealing [64°C for (CAG)5, 57°C for (CAA)5, 58°C
Virgin (flue-cured) type, cvs Helena, HyV8 and Golta; for (GACA)4, 42°C for (GATA)4, 52°C for (CA)6RG,
Burley (light air-cured) type, cvs HyB2, B971 and BO11; 52°C for (CTC)4RC, 57°C for (CT)8TC, 49°C for
and dark air-cured type, cvs Z992, Adonis and Badischer (CA)6AC, 56°C for (AG)8YA, each for 1 min] and exten-
Geudertheimer. sion (72°C, 3 min); and a final extension step (72°C, 5 min).
After adding 5 µL Roti-Load-DNA loading buffer (Carl
Roth GmbH, Karlsruhe, Germany) to the vial, an aliquot
Pot and root-chamber experiments
of the PCR products and a DNA-marker (pBR328 mix I,
Tobacco plants were grown in a sand /compost mixture Carl Roth GmbH) were separated on a 3% agarose gel
(1:1, v/v) in 5 kg plastic pots. The soil of each pot was (Agarose Resophor, Eurobio) in 1× Tris-borate-EDTA
mixed with 20 mg of O. ramosa seeds (about 1000 seeds (TBE) buffer at 50 V for 3 h. After electrophoresis, DNA
per kg of soil). was stained with ethidium bromide and visualized by a
Root chambers were filled with autoclaved sand and UV-transilluminator. The sizes of the ISSR-PCR products
glass fibre filter paper and prepared as described elsewhere were calculated with the help of the SigmaGel software
(Linke & Vogt, 1987). The O. ramosa seeds were evenly package ( Jandel Scientific). The amplification was repeated
spread on the glass filter paper. five times to evaluate the reproducibility of the ISSR-PCR.
Pot and root-chamber experiments were conducted
under glasshouse conditions with 25/15°C day/night tem-
Data analysis
perature and a 12-h light regime with a light density of
100 µE m−2 s−1. Pots and root chambers were connected to The experimental design involved completely randomized
an automatic drip irrigation system. Plants were fertilized treatments with six replicates per Orobanche population/
every second week with 40 mL of a 2% liquid fertilizer tobacco– cultivar association and repeated twice. Using
(Wuxal®, Bayer). Minitab (1998) for statistical analysis, all data were sub-
Three months after the experimental start date the jected to analysis of variance. Significant differences in the
branched broomrape plants emerged and the mean sever- mean values were determined by Tukey’s honest signifi-
ity of infection of tobacco (six plants of each cultivar) was cant differences (HSD) test at a significance level of 0·05.
evaluated by washing out the host root system and count-
ing O. ramosa shoots. Harvested host and O. ramosa
material was dried at 80°C for 72 h for determination of
Results
dry weight. Orobanche ramosa material collected from affected
Seed germination and development of O. ramosa were Virgin-tobacco fields at two locations from neighbouring
observed in root-chamber experiments according to regions in Germany exhibited significant differences in
methods of Linke et al. (2001) for all Orobanche–tobacco pathogenicity towards different tobacco cultivars. Branched
associations. Germination rates of Orobanche popula- broomrape from Karlsruhe parasitized all nine tobacco
tions were determined using the synthetic germination cultivars but differences were observed in the susceptibil-
stimulant GR24 (provided by Professor B. Zwanenburg, ity of the three different tobacco types (Fig. 2a). Virgin
Nijmegen, Netherlands) (Linke et al., 2001). tobacco types were most severely affected with between
114 and 169 mean Orobanche shoots per host plant. Cul-
tivars BO11 (Burley) and Badischer Geudertheimer (dark-
DNA isolation and ISSR-PCR
air cured) were least affected, with an average of 22 and
For molecular analysis, a bulk sample of O. ramosa plants 16 Orobanche shoots per tobacco plant, respectively.
of the same population were analysed. Closed O. ramosa The broomrape population from tobacco fields near
flowers (0·2 g) were ground in liquid nitrogen. DNA was Speyer also colonized all tobacco cultivars tested, but to a
isolated from the plant cells using the Invisorb Spin Plant much lesser extent than the Karlsruhe population (Fig. 2b).
Mini Kit (Invitek, Berlin, Germany) according to the man- Additionally, no clear differences in susceptibility between
ufacturer’s instructions. Genomic DNA was stored in the tobacco types were observed. The Virgin tobacco cul-
TE buffer at −20°C. The isolated genomic DNA was tivar HyV8 was the most heavily parasitized, with a mean
quantified spectroscopically with a Specord 50 UV-Vis- number of 55 O. ramosa shoots per tobacco plant, whilst
spectrophotometer (Analytic Jena). PCR used 25 µ L aliquots Virgin-tobacco cv. Helena, the Burley-type cv. BO11 and
containing 20 ng template DNA, 4 µm primer, ddH2O the dark air-cured tobacco cv. Z992 were the least suscep-
and puReTaq™ Ready-To-Go™ PCR beads (Amersham tible, with an average of 10, nine and two broomrape
Bioscience). DNA variations in O. ramosa populations shoots per plant, respectively.
were determined using nine different ISSR primers: non- The average seed germination rate of the two broom-
anchored primers (CAG)5 (CAA)5 (GACA)4 and (GATA)4; rape populations was very high (98%) when treated with
and anchored primers (CA)6RG (CTC)4RC (CT)8TC the synthetic germination stimulant GR24 (Linke et al.,
(CA)6AC and (AG)8YA (Qiagen). The ISSR-PCR was 2001) but, as expected, was lower in both populations when
conducted in a Mastercycler Personal thermal cycler stimulated by tobacco alone in root-chamber experiments.
Figure 3 Tubercles (t) and underground shoots (s) of Orobanche ramosa (Karlsruhe population) developing in root chambers on the roots (hr) of
the highly susceptible Virgin tobacco cv. HyV8 and on the less susceptible dark air-cured tobacco cv. Z992.
Figure 6 Intraspecific variation between three populations of Orobanche ramosa revealed by the ISSR-PCR primers (GATA)4 (a) and (CTC)4RC (b).
Lanes: M, molecular marker; Sp, Speyer; K, Karlsruhe; Su, Sudan populations; L, control. The numbers show fragment sizes of the DNA marker (M)
expressed in bp.
less aggressive Speyer population. This indicates that the for resistance to broomrapes requires prerequisite charac-
broomrape plants from Speyer were efficient at taking up terization of pathogen populations and genotypes. As this
nutrients from the host. Only on cvs Helena and Z992 did study has shown, molecular markers, such as ISSR–PCR
the Speyer population produce less biomass than O. Ram- products, can discriminate between even closely related
osa from Karlsruhe. This underlines the hypothesis of O. ramosa populations.
Hibberd et al. (1998) that a host plant can only support
a specific number of parasites. In the case of the more
Acknowledgements
aggressive Karlsruhe population, competition between
the Orobanche plants for the resources supplied by the We thank Dr Billenkamp, Landesanstalt für Pflanzenbau,
host may have resulted in reduced biomass for each Forchheim Karlsruhe, for providing us with seed material
parasitic plant. of the tobacco cultivars. We are also grateful to the
In seven of the nine tobacco cultivars, parasitization tobacco growers in the Rhine Valley between Speyer and
reduced host biomass compared with nonparasitized con- Freiburg, Germany, for their support during our seed col-
trols, with leaves and roots being most affected. Leaves lections of O. ramosa on their fields.
also showed severe wilting symptoms and, according to
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