Professional Documents
Culture Documents
a b,c,d,
Rachel Millner, MD , Brian Becknell, MD, PhD *
KEYWORDS
Urinary tract infection Pediatric public health Prophylactic measures
Pyelonephritis Vesicoureteral reflux
KEY POINTS
UTI should be diagnosed using catheterized specimen for incontinent children, or by clean
catch in continent children.
In children less than 24 months old, renal ultrasound should be performed after first febrile UTI.
The use of prophylactic antibiotics should be carefully considered in select populations.
The benefit in all patients with recurrent UTI is unproven and must be balanced against
the increased risk for resistant organisms.
Additional research is required to identify non-antibiotic treatments of UTI and to identify
children at high risk for renal scarring.
BACKGROUND
Epidemiology
Urinary tract infection (UTI) is the second most common bacterial infection in children,
affecting 8% of girls and up to 2% of boys within the first 7 years of life.1,2 The peak
incidence of UTI is in infancy, with a second peak in the toddler years and an increased
incidence again in adolescence. Of those who develop a UTI in childhood, up to 30%
will develop a second UTI.2 Children with the highest prevalence of UTI include neo-
nates, young infants, toddler girls, and uncircumcised boys less than 1 year of age.3
Increased risk of UTI is found in special populations, including children with structural
and functional urinary tract abnormalities, among others (Box 1).
a
UAMS Division of Pediatric Nephrology, Arkansas Children’s Hospital, 1 Children’s Way, Little
Rock, AR 72212, USA; b Nephrology Section, Nationwide Children’s Hospital, 700 Children’s
Drive, Columbus, OH 43205, USA; c Department of Pediatrics, Ohio State University School of
Medicine, 700 Children’s Drive, Columbus, OH 43210, USA; d Center for Clinical and Trans-
lational Research, The Research Institute at Nationwide Children’s Hospital, 700 Children’s
Drive, W308, Columbus, OH 43205, USA
* Corresponding author. Center for Clinical and Translational Research, The Research Institute
at Nationwide Children’s Hospital, 700 Children’s Drive, W308, Columbus, OH 43205.
E-mail address: Brian.becknell2@nationwidechildrens.org
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2 Millner & Becknell
Box 1
Risk factors for urinary tract infections
Clinical Impact
UTI is responsible for 500,000 pediatric emergency department visits and more than 1
million clinic visits each year in the United States.4–6 The overall US health care costs
for management and treatment of UTI in 2013 was $630 million.5,6 UTI carries an acute
risk of morbidity and mortality due to urosepsis, renal abscess formation, and acute
kidney injury. There is also a chronic risk of morbidity due to acquired renal scars,
leading to chronic renal insufficiency, proteinuria, and hypertension. Renal scarring
is found on dimercaptosuccinic acid (DMSA) scans on 10% to 40% of children who
develop pyelonephritis.7–9
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Urinary Tract Infections 3
Uropathogenic Escherichia coli (UPEC) is the most common and best studied path-
ogen implicated in UTI, accounting for 85% to 90% of episodes.11,12 Other enteric
gram-negative bacteria can cause UTI, including Klebsiella, Pseudomonas, Proteus,
Enterobacter, and Citrobacter spp. Certain gram-positive organisms are also impli-
cated in UTI, such as Staphylococcus saprophyticus, Enterococcus sp, and (rarely) S
aureus. Most uropathogens originate from fecal flora that crosses the perineum to
ascend the urethra and infect the bladder. On accessing the urinary tract, UPEC relies
on a set of genome-encoded virulence factors to attach to and invade the bladder uroe-
pithelium, as well as to directly interfere with the host immune response. UPEC triggers
the host innate immune response, which entails production of inflammatory cytokines,
complement activation, antimicrobial peptide secretion, and recruitment of phago-
cytes.10,13 Although innate immunity functions effectively to eradicate bacteria, the
resulting inflammation also leads to urothelial injury and clinical symptoms of cystitis.
Far less is known regarding the pathogenesis of acute pyelonephritis (APN). In nearly
all cases, APN occurs as a consequence of bacterial ascension from the bladder. Thus,
the presence of vesicoureteral reflux (VUR) confers increased susceptibility to APN in
experimental models. Just as in cystitis, UPEC possesses virulence factors that
enhance the likelihood of urinary tract ascent and invasion of the renal parenchyma.
UPEC triggers phagocyte recruitment and activation, leading to acute tubulointerstitial
nephritis. The collateral damage triggered by the host immune response is self-limited
and reversible in most instances but a subset of children experience renal scarring.
Emerging studies have identified single nucleotide polymorphisms in genes associated
with innate immunity in certain individuals with recurrent APN and/or renal scarring.7
This represents an area of active research, and the contribution of specific genetic var-
iants to overall APN or renal scarring risk remains unknown.
DIAGNOSIS
The American Academy of Pediatrics (AAP) clinical practice guidelines define UTI
based on urine culture and presence of pyuria. Specifically, pyuria is identified by uri-
nalysis (UA): greater than or equal to 10 white blood count (WBC)/mm3 or greater than
or equal to 5 WBC per high-powered field (HPF), or by the presence of leukocyte
esterase (LE) on a dipstick. A positive urine culture for UTI is defined by isolation of
a single uropathogen at a density of greater than 50,000 colony-forming units
(CFUs)/mL for urine specimens collected by catheterization or suprapubic aspiration
(SPA), or greater than 100,000 CFU/mL for a midstream, clean-catch urine
specimen.14
Screening for Urinary Tract Infection in Febrile Infants and Young Children
(2–24 Months)
Based on AAP clinical practice guidelines, febrile children 2 to 24 months of age
should be screened for UTI based on physician’s clinical assessment.14 The following
series of risk factors are used to develop a prediction rule to estimate probability of UTI
in infants.15–17
Infant girls: presence of more than 2 of the following risk factors increases
probability of UTI to greater than 2%
White race
Age less than 12 months
Fever greater than 48 hours
No other apparent fever source
Fever greater than or equal to 39 C.
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4 Millner & Becknell
Circumcised infant boys: presence of more than 3 of the following risk factors
increases probability of UTI to greater than 2%
Non-black race
Fever greater than 24 hours
No other apparent fever source
Or fever greater than or equal to 39 C.
In uncircumcised infant boys, the probability of UTI is greater than 2% in the pres-
ence of fever greater than 39 C, without additional risk factors.
A probability of greater than or equal to 2% was identified as a screening threshold
based on a survey of pediatricians, which showed that most pediatricians considered
a probability of 1% to 3% sufficiently high to warrant a urine culture.14 This screening
threshold allows the clinician to place certain febrile infants into a low-likelihood group
(probability of <1%–2%) to avoid invasive procedures to collect urine for culture (Fig. 1).
Screening for Urinary Tract Infection in Older Children and Specific Populations
Verbal children and adolescents should be screened for UTI if they have symptoms of
dysuria, urgency, frequency, cloudy urine, or abdominal or flank pain, with or without fe-
ver. In addition, screening should also be done in children of any age with fever without a
source if they have known urinary tract abnormalities, such as hydronephrosis, VUR, mul-
ticystic dysplastic kidney, neurogenic bladder, and voiding dysfunction, or in nonverbal
children with cognitive disabilities.18–20 In toilet trained children and adolescents, urine
should be collected via midstream, clean catch. In children who have not achieved uri-
nary continence, urine should be collected by transurethral catheterization or SPA.
Urine collected via urinary bag placed on the perineum should only be used to rule
out a UTI based on UA but should never be used to diagnose a UTI. There is a high
likelihood of contamination and false-positive results from bagged urine speci-
mens.5,14,21 If UTI is suspected based on bag specimen, urine should be recollected
via catheterization or SPA. Some studies have suggested that a clean-catch specimen
can be obtained from infants and young children using suprapubic and sacral stimu-
lation procedures.22–24 Although this is an attractive option to avoid invasive proced-
ures and can be done without special equipment in the clinical setting, there is a high
risk of culture contamination. A clean-catch urine specimen in infants can be used for
screening UA, much like a bag specimen, and may be more reliably obtained (eg,
decreased spillage, fecal contamination of bag). However, culture results from this
method of collection should be interpreted with caution and, preferably, repeated
with a catheterized or SPA urine specimen.
Presence of LE and nitrites on urine dipstick has a combined sensitivity of 93%
and specificity 72% for UTI.14 Urine nitrites are very specific for UTI but are not al-
ways present in the setting of UTI.14 Nitrites are the conversion of dietary nitrates
by enteric gram-negative, enteric organisms. It can take up to 4 hours for organisms
to reduce nitrates to nitrites, and this can be missed on initial screening UA.5,25
Furthermore, not all uropathogenic bacteria produce nitrites, giving nitrates a poor
sensitivity for ruling out UTI. Alternatively, LE has a high sensitivity for UTI, although
a recent study points to a lower incidence of pyuria in children with UTI due to E sp,
Klebsiella sp, and Pseudomonas aeruginosa than those with E coli UTI.12 Even so, LE
remains a mainstay for UTI diagnosis. Urine microscopy is superior to identify pyuria,
bacteriuria, and hematuria but is not always readily available in the clinical setting
and is not required for diagnosis of UTI. On urine microscopy, the presence of
greater than or equal to 10 WBC/mm3 or greater than or equal to 5 WBC/HPF is
considered significant in raising suspicion for UTI. Of note, the presence of LE is
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Urinary Tract Infections 5
Councel
Fig. 1. Algorithm for treatment of a febrile infant age 2 to 24 months. d, day; LE, leukocyte
esterase; RBUS, renal bladder ultrasound; SPA, suprapubic aspirate; UA, urinalysis; VCUG, void-
ing cystourethrogram; WBC, white blood count. (Data from Subcommittee on Urinary Tract
Infection, Steering Committee on Quality Improvement and Management, Roberts KB. Urinary
tract infection: clinical practice guideline for the diagnosis and management of the initial UTI
in febrile infants and children 2 to 24 months. Pediatrics 2011;128(3):595–610.)
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6 Millner & Becknell
not specific for UTI because many other conditions can present with sterile pyuria,
such as Kawasaki, glomerulonephritis, acute interstitial nephritis, appendicitis, or
even intense exercise. In the presence of UTI symptoms, presence of bacteria on
a fresh, uncentrifuged specimen in combination with Gram stain is also a reliable
test to identify UTI.12,26 The combined positive predictive value of bacteriuria and py-
uria for UTI can be as high as 84%.27
As previously noted, urine culture should always be sent from a sample collected by
clean catch, catheterization, or SPA, and accompanied by results of UA. Urine culture
will show growth within 24 to 48 hours and antimicrobial sensitivities will typically
require an additional 24 to 36 hours. Culture may be falsely negative or show a low col-
ony count in children who were treated with antibiotics before urine collection, and this
history should be elicited from the parent at the time of urine collection. In this setting,
degree of clinical suspicion and findings on UA will likely be most helpful.
In children who perform clean intermittent catheterization, asymptomatic coloniza-
tion is very common and occurs in almost 50% of children.28 Cultures can grow up to
105 CFU of bacteria and sometimes multiple organisms are isolated. Screening for UTI
and defining UTI in these children should follow more stringent criteria to avoid over-
prescription of antibiotics. Screening UA and urine culture should only be done when
suspicion for UTI is high. Madden-Fuentes and colleagues28 have proposed a stricter
definition of UTI in children with spina bifida. This definition requires 2 or more UTI
symptoms, greater than 10 WBC/HPF and greater than 100,000 CFU/mL of a single
organism before diagnosing and treating a UTI.
Atypical Uropathogens
As noted previously, almost all UTIs are caused by bacteria, chiefly E coli. However,
nonbacterial organisms can cause UTI in certain circumstances. Viral cystitis can
occur in both immunocompetent and immunocompromised patients. In immunocom-
petent children, certain adenovirus strains cause a viral cystitis characterized by gross
hematuria, dysuria, and abdominal discomfort. In immunocompromised children, pol-
yomaviruses such as BK virus can cause hemorrhagic cystitis. Diagnosis can be made
by polymerase chain reaction detection of the viral genome in the urine. Treatment of
viral cystitis is often symptomatic. In the setting of severe symptoms or in immuno-
compromised states, antivirals have been used with variable results and should be
considered on a case-by-case basis. Children with urinary schistosomiasis may pre-
sent with cystitis and terminal hematuria. If such individuals have a history of travel to
or immigration from endemic areas, they can be easily screened for urinary schistoso-
miasis, which is treated with the antiparasitic agent, praziquantel.
Fungal cystitis is rare but can occur in children on chronic antibiotics, with indwelling
catheters, or children who are immunocompromised. The most common fungal path-
ogen is Candida sp.29 Funguria is identified by presence of fungal elements or budding
yeast on microscopy and growth of fungi on culture. Patients with UTI due to Candida
sp can rarely develop a kidney fungal ball, usually at the ureteropelvic junction, which
is detectable by renal ultrasound.30
Asymptomatic Bacteriuria
The clinical significance of ABU in healthy children is controversial. Various studies
have shown 0% to 10% of children with ABU will develop a symptomatic UTI.31–33
One randomized, prospective study of young girls with ABU showed no difference in
renal function or renal size between girls treated for ABU and those left untreated.32,33
ABU is more common in children with urinary tract abnormalities and those who chron-
ically catheterize. ABU is not thought to increase risk of UTI or renal scarring in this
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Urinary Tract Infections 7
population.31 Screening for ABU is not recommended in any population and bacteriuria
should only be treated if there is clinical suspicion for symptomatic infection.
CLINICAL MANAGEMENT
Antimicrobial Treatment
Prompt initiation of empiric antibiotics should occur if clinical suspicion for UTI is high
and UA is suggestive of infection (presence of pyuria, with or without nitrites). Empiric
antibiotics should be prescribed based on local sensitivity and resistance patterns.
Antimicrobial therapy should be tailored to the results of urine culture and sensitivities.
Antibiotics should be continued for a total of 7 to 14 days from initiation of appropriate
therapy, based on AAP guidelines. Inpatient parenteral therapy should be considered
for the first 2 to 4 days in acutely ill children, children who cannot tolerate oral therapy,
or when adherence with prescribed regimen is in question. Children with a renal or
perinephric abscess should be treated with parenteral therapy and surgical drainage
should be considered. Parenteral therapy should also be considered in children who
are immunocompromised and those with indwelling devices (eg, catheters, stents).
Commonly used empiric oral antibiotics are detailed in Table 1. In 2013, Edlin and col-
leagues11 described resistance patterns in pediatric urinary isolates from 192 hospitals
throughout the United States and found that up to 24% of E coli cultured were resistant
to trimethoprim-sulfamethoxazole (TMP-SMX) and 45% resistant to ampicillin, making
these a poor choice for empiric therapy. Furthermore, resistance was found in less than
10% of E coli for cephalosporins, amoxicillin-clavulanate, ciprofloxacin, and nitrofuran-
toin.11 Nitrofurantoin is excreted primarily in the urine and can be a good antibiotic
choice for isolated, afebrile cystitis. However, it does not achieve adequate concentra-
tions within the blood stream, making it a poor therapy for febrile infants or young chil-
dren with UTI.14 In children with recurrent UTI, attention should be paid to culture and
susceptibility patterns on previous urine specimens and empiric antibiotics tailored to
those results. As soon as culture and sensitivity results are available, antibiotics should
be adjusted or narrowed to the specific organism. Empiric antibiotics should be discon-
tinued immediately if the urine culture fails to yield bacterial growth by 48 hours.
The development of infections with multidrug-resistant organisms (MDROs) are
more commonly found in hospital-acquired infections, children with urinary tract
abnormalities or with indwelling devices, and in children who have received recent an-
tibiotics.11,34 In the setting of UTI with MDROs, the practitioner should consider
consultation with an infectious disease specialist.
Table 1
Common empiric antibiotics and recommended dosing
Maximum
Antibiotic Recommended Dosing Dose
Amoxicillin-clavulanate 20–40 mg/kg/d divided 3 times daily 500 mg/dose
Trimethoprim (TMP)- 2–24 mo: 6–12 mg TMP/kg/d divided twice daily 160 mg/dose
sulfamethoxazole >24 mo: 8 mg TMP/kg/d divided twice daily
Nitrofurantoin 5–7 mg/kg/d divided 4 times daily 100 mg/dose
Cephalexin 50–100 mg/kg/d divided 4 times daily —
>15 y: 500 mg twice daily
Cefpodoxime 10 mg/kg/d divided twice daily —
Cefixime 8 mg/kg/d once daily 400 mg/d
Cefuroxime 20–30 mg/kg/d divided twice daily 500 mg/dose
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8 Millner & Becknell
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Urinary Tract Infections 9
All children should have a thorough physical examination to look for findings that
would suggest a complicated UTI. Physical examination should focus on the abdomen
and pelvis, assessing for abdominal masses, palpable stool, or bladder. A careful
genitourinary examination should be performed assessing for abnormalities of the ure-
thral opening, genital adhesions, or vulvovaginitis. An examination of the spine is
important to rule out sacral dimples or hair tufts indicate occult spinal lesions.
Prophylactic Antibiotics
The role of continuous antibiotic prophylaxis (CAP) in pediatric UTI prevention has
been hotly debated over the past several decades. Most of the evidence regarding
the use of CAP stems from studies in subjects with VUR and rUTI. Craig and col-
leagues45 identified a moderate reduction in rUTI among subjects ages 0 to 18 years
on CAP with TMP-SMX. Although VUR status was unknown in 17% of subjects, Garin
and colleagues46 concluded that neither CAP nor grade I to III VUR significantly influ-
enced rUTI in children 3 months to 18 years. The Swedish Reflux Trial concluded that
girls with high-grade VUR experienced reduced rates of rUTI and renal scarring
compared with placebo controls over a 2-year period.47,48 In the United States, the
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10 Millner & Becknell
RIVUR trial demonstrated a 50% reduction in rUTI among patients on CAP between
the ages of 2 to 71 months with grade I to IV VUR.49 The benefit of CAP was particu-
larly evident in girls, patients with febrile index UTI, and those with BBD.18 However,
CAP was associated with a 3-fold increase in antibiotic resistance among stool E
coli isolates. There was no significant impact of CAP on new renal scarring in the
RIVUR study, which was relatively infrequent (8.3%) over the 24-month study period.49
The apparent benefit of CAP in selected patient populations has led some investiga-
tors to advocate a selective prophylaxis approach in children with VUR.50
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Urinary Tract Infections 11
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