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Fisheries Research 99 (2009) 203–209

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Fisheries Research
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Difficulties associated with modeling growth in the Atlantic angel shark


(Squatina dumeril)
Ivy Elizabeth Baremore ∗ , Kate Irene Andrews, Loraine Frances Hale
National Marine Fisheries Service, Southeast Fisheries Science Center, 3500 Delwood Beach Road, Panama City, FL 32408 USA

a r t i c l e i n f o a b s t r a c t

Article history: Several methods were used in an attempt to develop an age and growth model for the Atlantic angel
Received 23 March 2009 shark (Squatina dumeril). Band counts from vertebral sections, which were fit to the traditional von Berta-
Received in revised form 5 June 2009 lanffy growth equation, the Gompertz growth equation, and the two-parameter von Bertalanffy growth
Accepted 9 June 2009
equation, did not produce realistic parameter estimates. Additionally, a length-based Bayesian model was
applied to fishery-independent length–frequency data, and a full Bayesian model was fitted to length-
Keywords:
at-age data to estimate parameters for von Bertalanffy growth equation. Both the length-based and full
Age
Bayesian models failed to converge; the length–frequency data showed high bimodality unrelated to sea-
Growth
Squatina dumeril
son, year, or other factors, and band counts were not predictable by length. Vertebral band counts were
Bayesian not valid for ageing Atlantic angel sharks, and length-based methods, which require normally distributed
Length-based von Bertalanffy length–frequencies, were not appropriate for this data set. This study represents the first attempt at
modeling age and growth for this species and provides research guidelines for future research initiatives.

© 2009 Elsevier B.V. All rights reserved.

1. Introduction extensively used in modern marine fisheries research, where age-


based methods dominate. However, the inability to obtain ages
Age and growth information for fishes is necessary for age- from many fishes lends to the necessity of using length data for
structured stock assessment models (Siegfried and Sansó, 2006), growth estimates. Siegfried and Sansó (2006) developed a length-
and is used to estimate a host of parameters that are vital to fish- based Bayesian model that provided a statistically sound estimate
eries management, including longevity and vulnerability to fishing of the asymptotic size parameter (L∞ ) from the von Bertalanffy
mortality (Jennings et al., 2001). Unfortunately, individual ages for growth equation (VBGE). This method is most useful when age
many species of fishes, especially elasmobranchs, can be difficult to data are not available but growth estimates are required for assess-
obtain. Deep water, tropical, and Arctic fishes are the most challeng- ment.
ing to age, mostly due to lack of calcification of hard parts and/or Angel sharks (Squatinidae) are benthic elasmobranchs that
temporally unpredictable banding patterns (Cailliet and Goldman, occur circumglobally in tropical and temperate waters and have
2004; Treble et al., 2008). been found at depths ranging from near shore to as deep as 3400 m
Sharks and other elasmobranchs are generally aged using band (FAO, 2002). While little species-specific information is available,
counts of vertebral centra, spines, or other calcified structures angel sharks are known to be aplacentally viviparous (Compagno,
(Cailliet and Goldman, 2004). This method has been validated for 1984), with up to a three-year reproductive cycle (Colonello et
several species of sharks (Carcharhinus obscurus (Simpfendorfer al., 2006). The Pacific angel shark (S. californica) has a maximum
et al., 2002), Lamna nasus, Campana et al., 2002), Prionace glauca age of 35 years (Cailliet et al., 1992), and a maximum size of
(Skomal and Natanson, 2003), and C. acronotus (Driggers et al., 1500 mm total length (TL). The only published study examining age
2004)), skates (Amblyraja radiata (Sulikowski et al., 2005)), and rays structures of angel sharks found that S. californica “do not deposit
(Urobatis halleri (Hale and Lowe, 2008)), but some elasmobranchs vertebral bands annually or in a temporally predictable manner”
have proven more problematic (Squatina californica (Natanson and (Natanson and Cailliet, 1986). Von Bertalanffy parameters were
Cailliet, 1990). Despite a call from Pauly (1987) to develop and estimated for S. californica through tag returns and captive-held
implement more length-based growth models, they have not been animals (L∞ = 1270 mm TL, k = 0.15, sexes combined) (Cailliet et al.,
1992). The Atlantic angel shark (Squatina dumeril) occurs through-
out the Gulf of Mexico and in the U.S. Atlantic Ocean. Males and
∗ Corresponding author. Tel.: +1 850 234 6541; fax: +1 850 235 3559. females mature at around 850 mm TL (Baremore, in review), but
E-mail address: Ivy.Baremore@noaa.gov (I.E. Baremore). their reproductive cycle has yet to be determined. The only pub-

0165-7836/$ – see front matter © 2009 Elsevier B.V. All rights reserved.
doi:10.1016/j.fishres.2009.06.006
204 I.E. Baremore et al. / Fisheries Research 99 (2009) 203–209

lished information for this species is on feeding habits (Baremore used in the analysis. A 1:1 plot of the readers’ original band counts
et al., 2008). was analyzed with a chi-square test of symmetry to assess whether
The objectives of this study were to (1) determine if vertebrae systematic reader bias occurred (Cailliet and Goldman, 2004).
are valid ageing structures for Atlantic angel sharks and (2) explore The percent reader agreement (PA = [No. agreed/No. read] × 100)
non-traditional age and growth methods for a species belonging to between readers and PA ±1 year were also calculated to determine
a genus that is notoriously difficult to age. reader precision (Cailliet and Goldman, 2004).

2.3. Age and growth models


2. Materials and methods
Two traditional growth models were applied to the band count
2.1. Sampling and vertebrae preparation
data: the von Bertalanffy growth equation (von Bertalanffy, 1938,
Atlantic angel sharks were collected from a butterfish trawl 1957) and the Gompertz growth equation (GGE) (Goldman, 2004;
fishery in the northeastern Gulf of Mexico from November 2003 Ricker, 1979). The formula for the VBGE is written as:
through November 2005. Sharks were placed on ice and trans- Lt = L∞ (1 − e−k(t−t0 ) )
ported to the NOAA Fisheries Service Panama City Laboratory for
dissection. At the laboratory, the sharks were assigned a refer- where t is age, L∞ is asymptotic length, k is the growth coefficient,
ence number, sexed, weighed (±0.02 kg), measured for precaudal and t0 is the x-intercept. The GGE is simply a modified VBGE using
(PCL), fork (FL), and total (TL) lengths (mm), and their maturity was weight rather than length and is written as:
assessed by internal examination. All lengths taken were straight- g(t−t0 )
Wt = W∞ e−e
line measurements starting from the tip of the snout. Portions of the
middle of the vertebral column (∼10–15 vertebrae) were removed where W∞ is the asymptotic weight and g is the growth coeffi-
and frozen until they could be processed. Upon thawing, vertebral cient. The residual mean square error values (MSE), coefficient of
centra were separated, cleaned of excess tissue with a scalpel and determination (r2 ), and level of significance were compared among
placed in a 3% solution of sodium hypochlorite for 30–45 min, or models. Additionally, a two-parameter VBGE was fitted to the data
until all muscle and viscera had disintegrated. Once clean, vertebrae using known length-at-birth (L0 = 300 mm TL) in lieu of the t0 value:
were rinsed in fresh water and placed in 70% ethanol for storage.
To determine the best method for reading band counts, ten indi- Lt = L∞ − (L∞ − L0 )e−kt
viduals were selected at random, and five vertebral centra from
each individual were used for comparison. Vertebral centra were All age models were run using the R 2.6.2 nls function and estimated
mounted to slides using melted resin and sectioned sagittally in by least-squares non-linear regression analysis.
five ways: (1) cut in half, (2) sectioned at 0.9 mm, (3) sectioned at A length-based Bayesian model was also applied to length
0.6 mm, (4) sectioned at 0.3 mm, and (5) sectioned at 0.6 mm sagit- data. The model estimated the L∞ parameter of the VBGE
tally, but not between the neural arches. All sections were made using length–frequency data (n = 989) obtained from fishery-
with a Bueller isomet saw fitted with two Norton® Diamond Wheel independent Southeast Area Monitoring and Assessment Program
blades with spacers in between the blades. Sections were mounted (SEAMAP) trawl surveys and one additional fishery-independent
to microscope slides using Cytoseal® mounting medium, and band survey run by the National Oceanic and Atmospheric Adminis-
counts were made with transmitted light using a Meiji® Techno tration (NOAA) in the northern Gulf of Mexico. These surveys
dissecting microscope at ×25 magnification. Vertebral centra that use a random stratified design for trawl locations with propor-
were cut in half were mounted cut-side-up and band counts were tional allocations for depth, and take place in June–July and
read using reflected light. Band counts were made for the sections October–November. The length data were collated from three ves-
and halved vertebrae for each individual and compared. Digital sels conducting surveys over a period of 20 years (1988–2007). The
images were also taken for reference. model is written as:
 
Because bands on the edge of the centra were obscured for xi /
many of the halved centra (Fig. 1A) and therefore caused under- Yi = log for xi < 
1 − (xi /)
estimation of band count, this method was rejected for band count
analysis. Additionally, the bands in the centra for 0.9 mm sections where xi s are the lengths,  is a proxy for L∞ , and Yi ∼ N(,  2 ).
were difficult to read and in many cases appeared blurry (Fig. 1B), A full description of the model and likelihood can be found in
and the 0.3 mm sections were very fragile and often split or fell Siegfried and Sansó (2006). A plot of the transformed data was used
apart (Fig. 1C). Overall the sections made between the neural arches to assess normality of the Yi s, and the mean of the normal prior for
at 0.6 mm provided the clearest bands with the most consistently L∞ ( = 1345 mm TL,  2 = 145) was based on maximum observed
robust samples (Fig. 1D). No change in angle was detected in any size of captured S. dumeril in this study and from S. californica that
sections, so no birthmark could be identified. Therefore, sections were recaptured and held in captivity (Cailliet et al., 1992). Finally, a
were read starting at the foci with the first detectable band and full Bayesian model, which fits the VBGE with Markov Chain Monte
moving outward to the edge of the centra. Carlo methods (Gelman et al., 2004; Hastings, 1970), was applied to
the Atlantic angel shark length-at-band count data. The full model,
2.2. Band count analysis described in Siegfried and Sansó (2006), used informative priors for
t0 and k based on the published estimates of S. californica, as stated
A subsample of 150 individuals was chosen at random for band above (Cailliet et al., 1992).
count analysis from a pool of approximately 700 samples. An addi-
tional 50 vertebrae were then selected according to the size of the 3. Results
shark to fill in size classes that were missing or inadequately rep-
resented. Band counts were made by two readers independently Atlantic angel sharks included in the band count analysis ranged
and without knowledge of the size or sex of the individual animal. in size from 275 to 1160 mm TL, with 87 females and 93 males
If band counts differed between readers, the slides were viewed (Fig. 2). All lengths are reported in TL because the hypocercal
again by both readers in concert until a consensus was reached. If tail shape of angel sharks likely makes this measurement the
no agreement could be made, the section was discounted and not least variable. Morphometric relationships used to convert length
I.E. Baremore et al. / Fisheries Research 99 (2009) 203–209 205

Fig. 1. Digital images of an Atlantic angel shark vertebra sectioned (A) in half, (B) at 0.9 mm, (C) at 0.3 mm, and (D) 0.6 mm.

and weight measurements are as follows: FL = 0.9501(TL) + 0.1607 Vertebral sections exhibited poor calcification, and in many
(n = 1069, r2 = 0.99, p < 0.0001) and weight = 6.696e − 6(TL)3.033 cases the intermedialia separated from the corpus calcarius after
(n = 988, r2 = 0.99, p < 0.0001). ANCOVA tests showed no signifi- the sections were glued to the slides (e.g. Fig. 1C). The APE between
cant differences in these relationships between sexes (p > 0.05 for readers was 5.81%, with a PA of 27.37%, PA ±1 band of 60.34%, and
both length–length and length–weight regressions), and pregnant PA ±2 bands of 72.63%. An age-bias plot showed little bias between
females were excluded from the length–weight regression. readers (Fig. 3), a chi-square contingency table showed equal bias
along all band counts (p > 0.10), and McNemar’s test found no bias
between readers at +1 or +2 band counts (p > 0.10), or at different
grouped band counts (p > 0.10).
Overall, band counts failed to produce realistic growth curves
regardless of which growth equation was used. The VBGE produced

Fig. 2. Length–frequency histogram of Atlantic angel sharks used for band count Fig. 3. Bias plot between Reader 1 and Reader 2 for band count analysis showing
analysis for females and males. little fundamental bias between readers. The line indicates a 1:1 relationship.
206 I.E. Baremore et al. / Fisheries Research 99 (2009) 203–209

Table 1
Results for the von Bertalanffy growth equation, Gompertz growth equation, and two-parameter VBGE. SE is the residual standard error of the model for the present study
and the standard error for Cailliet et al. (1992). Results are presented for combined sexes.

Study Model L∞ /W∞ k/g t0 SE

Present VBGE 2606 0.0146 −3.8372 10.73


Present GGE 9.76 0.1452 18.9981 1.58
Present Two-parameter VBGE Did not converge
Cailliet et al. (1992) VBGE (Gulland and Holt 1959) 1270 0.1460 2.5
Cailliet et al. (1992) Two-parameter VBGE 1252 0.1010

Fig. 4. Plots of band counts (A) by total length with the von Bertalanffy growth
equation fitted to the data and (B) the Gompertz growth equation fitted to weight-
at-band count data.

an overinflated L∞ of 2606 mm TL (Table 1, Fig. 4A), however, plots


of the residuals showed no systematic bias in length-at-band count.
Removal of outlier points did not produce a more favorable result.
The GGE produced an underestimated W∞ of 9.76 kg and unrealis-
tic t0 value of 18.99 (Table 1, Fig. 4B), and the residual plot showed
increasing error with weight. The two-parameter VBGE did not con-
verge.
The length-based Bayesian model also failed to converge, likely
due to the bimodal distribution of the transformed data (Fig. 5A).
Previous successful applications of this model were to data that
were normally distributed after the transformation. Furthermore,
the log of the variance increased exponentially (Fig. 5B), and
Fig. 5. Plots from the length-based Bayesian model: (A) histogram of the trans-
increasing the variance of the jumping distribution in the model
formed data showing the bimodality of the data, and (B) plot showing the
produced very different and unpredictable results (Figs. 6A–F), as exponential increase of the variance of the model.
the model could not compensate for both peaks in the data. Like-
wise, the full Bayesian model did not produce any reasonable results to length or weight using traditional or Bayesian growth mod-
for the VBGE, indicating that length-at-age analysis for this species els. Sections of vertebrae frequently had large holes or separations
was not realistic. between bands, making consistent band counts difficult. Though
band counts are most likely not predictive of age for S. dumeril,
4. Discussion there was an increase in band number with size. Atlantic angel
sharks smaller than 300 mm TL (neonates) had between two and
The vertebrae of Atlantic angel sharks did not appear to be valid six bands, and no change in angle associated with a birthmark was
ageing structures, as the band formation was not predictably related seen. Bands were, for the most part, evenly spaced and began very
I.E. Baremore et al. / Fisheries Research 99 (2009) 203–209 207

Fig. 6. Plots of the first 100 iterations of the length-based Bayesian model with variance of the jumping distributions of (A) 1.50, (B) 1.75, (C) 2.00, (D) 2.50, (E) 2.75, and (F)
3.0. The lines represent the mean of the prior for L∞ (1345 mm TL).

close to the focus of the vertebral centra. However, there were many season, the data were always highly bimodal with the trough in
cases in which double, and some cases, triple splitting of bands the length–frequency roughly corresponding with the estimated
occurred at the edge of the intermedialia (see Fig. 1). Additionally, size at maturity (Figs. 7A–E). The most plausible explanation for
some vertebral centra had differing numbers of bands on either this occurrence is sampling bias, though the length–frequency
side of the intermedialia. The band counts differed in some cases of trawl-caught S. guggenheim in the Argentine-Uruguayan Com-
by as many as four, depending on which side of the section was mon Fishing Zone was also bimodal (R. Vogler, pers. comm.). The
read. Natanson and Cailliet (1990) found that growth band counts SEAMAP and other fishery-dependent trawl surveys took place in
of S. californica differed along the vertebral column, and that edge the early summer and fall, therefore it is possible that migration
formation was not temporally predictable. Similarly Natanson et al. or depth-stratification of the mid-sized Atlantic angel sharks take
(2008) showed that basking sharks (Cetorhinus maximus) could not them out of the sampling areas during these times. These trawl
be aged using band counts, and found a difference of up to 24 band surveys were fairly extensive, however, and together covered most
pairs among centra along the vertebral column of one specimen. of the U.S. Gulf of Mexico from depths of approximately 25–500 m.
The authors suggested that band deposition for S. californica was Despite the fact that the trawls fished differently and were of differ-
related to somatic growth, rather than time or age, based on cap- ent sizes, the length–frequencies of angel sharks among the vessels
tive growth and tag-recapture studies. Because no Atlantic angel were always bimodal. The failure to converge shows an obvious
sharks were held in captivity for this study, it is unclear whether limitation with this method, which has performed well for several
this is the case in this species. Analyzing differences in band counts other species.
along the vertebral column is an important step when assessing The mechanisms of chondrichthyan vertebral growth remain
the validity of vertebrae as ageing structures (Piercy et al., 2006), largely unknown, though the seasonal nature of growth band depo-
however because the use of angel shark vertebral centra was dis- sition in temperate fishes is likely influenced by internal “biological
counted, this method was not considered necessary for this study. clocks” which regulate growth (Gelsleichter, 1998). Of the species
Centrum edge analysis was also not attempted because the edge that have shown poor calcification of vertebral centra, most are
formation could not be characterized. either primitive or deep water (Cailliet, 1990). Although angel
The lack of an asymptote in size with increasing band count sharks are among the most derived of the shark-like elasmobranchs
caused the VBGE to produce biologically unreasonable estimates (Compagno et al., 1990), they are benthic-associated, mostly deep
of L∞ and k, the GGE estimates were also unrealistic, and the water species (McEachran and Fechhelm, 1998). Hypotheses for
two-parameter VBGE did not converge. The length-based Bayesian the poor calcification of vertebrae in deep water elasmobranchs
model was not successful due to the bimodal distribution of the include lack of photoperiod and temperature changes, food lim-
length data, and the model could only be forced to run through a itation, and low calcium concentration (Cailliet, 1990). There is,
maximum 150 iterations. Several attempts made to find the source however, evidence that Atlantic angel sharks spend at least part
of the bimodality were unsuccessful; when assessed separately by of their life history in shallow water, as they are known to have
vessel, sex, region (eastern vs. western Gulf of Mexico), depth, and an inshore–offshore migration in the U.S. north Atlantic Ocean
208 I.E. Baremore et al. / Fisheries Research 99 (2009) 203–209

Fig. 7. Plots of length–frequency data showing the bimodal distribution among factors (A) sex, (B) location, (C) depth, and (D) season.

(Compagno, 1984), and were captured in the Gulf of Mexico as shal- actions with other fisheries is high. Given the problems associated
low as 25 m in this study. Food limitation is also unlikely because the with interpreting basic life history parameters using conventional
Gulf of Mexico continental shelf has high productivity and Atlantic means, future studies on the age, growth, and reproduction of squa-
angel sharks are top predators (Baremore et al., 2008; Cortés, 1999). tinids should focus on large-scale tagging projects, captive growth
Additionally, Natanson and Cailliet (1990) collected all Pacific angel experiments, and/or novel ageing techniques such as LA-ICP-MS.
sharks for their ageing study in depths of less than 77 m. Annual Squatinids throughout the world have seen catastrophic declines
band formation in elasmobranchs may be unrelated to tempera- due to heavy trawling activities, and several species have been listed
ture, as found in the little skate (Raja erinacea) (Natanson, 1993), and as endangered, threatened, or locally extirpated (IUCN, 2002). Alter-
may instead be influenced more by hormonal levels (Gelsleichter native strategies for assessment of the life history of this species,
and Musick, 1999). and potentially other squatinids, should be addressed before such
A lack of a calcified structure (i.e. otolith) that can be used for declines occur, rather than after the species has been impacted.
ageing analysis is rare among fishes, but is more common among
deep water, and especially slow-growing species (Treble et al., Acknowledgements
2008). However, more species are being aged in what are com-
monly thought to be ‘aseasonal’ environments, such as the deep sea Thanks to Raffield Fisheries for their help and supply of angel
and tropical areas, as sampling and ageing techniques become more sharks throughout the years. L. Hollensead and D. Bethea helped
sophisticated (Morales-Nin and Panfili, 2005). Laser ablation induc- with processing of animals, and M. Winton, H. Moncrieff, H.
tively coupled plasma mass spectroscopy (LA-ICP-MS) is a relatively McCann, and T. Dillon sectioned the vertebrae. G. Pellegrin pro-
new method for assessing the spatial distribution of elements in vided the SEAMAP data used in the analysis. Thanks also to M.
cartilage of elasmobranchs, and has been demonstrated to effec- Passerotti for reviewing a previous version of this manuscript. All
tively elucidate band counts for round stingrays with fewer than Atlantic angel sharks were collected with a NOAA Fisheries Service
five band counts (Hale et al., 2006). This method could be applied to Exempted Fishing Permit (HMS-EFP-0301, EFP-04-01, EFP-05-01).
angel shark vertebrae as it allows for detection of very small changes
in the elemental signature of cartilage, even when calcification is References
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