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Carbapenem-Resistant Klebsiella Pneumoniae Producing New Delhi Metallo-β-Lactamase at An
Carbapenem-Resistant Klebsiella Pneumoniae Producing New Delhi Metallo-β-Lactamase at An
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original article
Erin E. Epson, MD;1,2 Larissa M. Pisney, MD;3 Joyanna M. Wendt, MD;1,4 Duncan R. MacCannell, PhD;5
Sarah J. Janelle, MPH;2 Brandon Kitchel, MS;4 J. Kamile Rasheed, PhD;4 Brandi M. Limbago, PhD;4
Carolyn V. Gould, MD;4 Alexander J. Kallen, MD;4 Michelle A. Barron, MD;3 Wendy M. Bamberg, MD2
Mechanisms of decreased susceptibility to carbapenems for Disease Control and Prevention [CDC], unpublished
among Enterobacteriaceae include acquisition of genes en- data); all but 3 were from patients who had received inpatient
coding carbapenemase enzymes. These carbapenemases can medical care in regions where these organisms are believed
be transmitted between bacteria on mobile genetic elements, to be more common.6 We describe a US outbreak of NDM-
leading to the potential for widespread transmission of de- producing CRE at a Colorado hospital. A collaborative in-
creased carbapenem susceptibility among multiple genera of vestigation conducted by the hospital, Colorado Department
gram-negative bacteria.1 The New Delhi metallo-b-lactamase of Public Health and Environment (CDPHE), and the CDC
(NDM) is a carbapenemase first described in 2009 in an characterized multiple routes of healthcare-associated trans-
isolate from a Swedish patient who had received medical care mission during 4 months and led to targeted infection control
in India.2 NDM-producing carbapenem-resistant Enterobac- measures to halt the outbreak.
teriaceae (CRE) have been reported primarily from South
Asia but have also been isolated from patients worldwide.3,4 methods
NDM-producing CRE have been described rarely in the
Epidemiologic Investigation
United States, where NDM was first detected in an isolate
collected in 2009.5 Before August 2012, only 15 NDM- This investigation underwent review by the CDC Scientific
producing isolates were identified from 8 US states (Centers Education and Professional Development Program Office hu-
Affiliations: 1. Epidemic Intelligence Service, Centers for Disease Control and Prevention, Atlanta, Georgia; 2. Colorado Department of Public Health
and Environment, Denver, Colorado; 3. Division of Infectious Diseases, University of Colorado, Aurora, Colorado; 4. Division of Healthcare Quality
Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia; 5. Antimicrobial Resistance and Characterization Laboratory, Centers for Disease
Control and Prevention, Atlanta, Georgia.
Received August 16, 2013; accepted November 8, 2013; electronically published March 6, 2014.
䉷 2014 by The Society for Healthcare Epidemiology of America. All rights reserved. 0899-823X/2014/3504-0010$15.00. DOI: 10.1086/675607
man subjects protection coordinator and was determined to who resided in the same hospital unit as the earliest identified
be nonresearch, because the primary intent was disease con- case patients were also conducted to identify NDM risk
trol. The outbreak occurred at a tertiary-care academic hos- factors.
pital in the Denver metropolitan area. A case patient had a
clinical or surveillance culture (SC) positive for an Entero- Infection Prevention Assessment
bacteriaceae isolate that was polymerase chain reaction
Infection control (IC) protocols were reviewed, including
(PCR)–positive for NDM while hospitalized during the pe-
procedures for tracking patients with cultures positive for
riod January 1, 2012, to October 20, 2012. Hospital micro-
multidrug-resistant organisms (MDROs) and notifying ac-
biology records were queried for Enterobacteriaceae isolates
cepting facilities or units of the patients’ MDRO status upon
that were nonsusceptible to any carbapenem cultured from
transfer. Interfacility transfers of case patients were investi-
any patient specimen collected during the period January 1,
gated, and implementation of IC measures at the receiving
2012, to October 20, 2012. Available isolates that were non-
facilities was assessed. Unit managers and nursing staff in
susceptible to all carbapenems and extended-spectrum ceph-
affected units; staff in perioperative, procedure, and radiology
alosporins tested (ie, cefotaxime, ceftriaxone, ceftazidime, and
areas; and environmental cleaning managers were inter-
cefepime) were assessed for Klebsiella pneumoniae carbape-
viewed. Direct observations were conducted of hand hygiene
nemase (KPC) and NDM by PCR.7 To identify asymptomatic
and contact precaution (CP) adherence, cleaning and dis-
colonization with NDM-producing CRE among patients with
infection of environmental surfaces in patient rooms and
epidemiologic links to case patients, serial rounds of rectal
other patient care areas, and use of shared medical equipment.
SCs were conducted among patients on hospital units where
patients with NDM-producing CRE had resided. SC rounds
Laboratory Analysis
were performed weekly until no additional case patients were
identified in 4 successive rounds. Antimicrobial susceptibility testing (AST) of Enterobacteri-
Medical records from all confirmed case patients were re- aceae isolates was performed by the hospital clinical labo-
viewed for clinical and epidemiologic characteristics, includ- ratory using Kirby-Bauer disc diffusion (KB testing) for iso-
ing dates of admissions, transfers, and hospital discharges; lates cultured from nonurine sites and MicroScan
locations within the hospital; radiographic studies; proce- (MicroScan) for isolates cultured from urine. Clinical and
dures; use of invasive devices; microbiology results; and an- Laboratory Standards Institute (CLSI) interpretive criteria for
timicrobials received. Interviews of case patients or their sur- AST (CLSI document M100-S22)8 were used for isolates eval-
rogate were conducted to obtain travel history and exposures uated by KB testing, and M100-S19 CLSI criteria9 were ap-
to other healthcare settings during the 6 months before ad- plied to urine isolates evaluated by MicroScan.
mission to the hospital; reviews of medical records of patients AST was repeated at the CDC using broth microdilution
figure 1. Epidemiologic tracing and overlap of hospitalized patients with New Delhi metallo-b-lactamase (NDM)–producing carbapenem-
resistant Enterobacteriaceae (CRE), Colorado, May 27–September 26, 2012 (n p 8). The 3 patients identified from clinical cultures are
depicted as circles lettered A, B, and C; the 5 patients detected through surveillance cultures are depicted as squares numbered 1–5. Each
patient’s hospitalization is graphed as a horizontal bar, with different colors representing units where the patients resided during their
hospitalizations. The yellow bars indicate the dates of specimen collection for each patient’s index NDM-producing CRE culture. Overlap
in procedure and radiology rooms is denoted by the arrows between patient tracings. “Other units” included medical intensive care unit,
transplant unit, medicine unit, and cardiac intensive care unit. BICU, burn and trauma intensive care unit; CT, computed tomography;
MRI, magnetic resonance imaging; NSICU, neurosurgical intensive care unit; OR, operating room; SICU, surgical intensive care unit.
(CLSI document M07-A9),10 and isolates were tested at the trauma intensive care unit (BICU) and surgical intensive care
CDC for the presence of blaKPC and blaNDM with multiplex unit (SICU) who had resided in adjacent rooms or shared
real-time PCR.7 nursing staff with the first 2 identified case patients during
SCs were performed at the hospital clinical laboratory ac- August; all SCs were negative for CRE. On September 26,
cording to a CDC-developed protocol.11 M100-S22 CLSI in- SCs were performed for 37 (66%) of all 56 patients residing
terpretive criteria were applied to AST of these isolates.8 on 4 units (BICU, SICU, and cardiology and rehabilitation
Case isolates and a convenience sample of epidemiologi- units), where the first 2 identified case patients had resided
cally linked NDM-negative extended-spectrum b-lactamase during their hospitalizations. A total of 5 CRKP isolates were
(ESBL)–producing K. pneumoniae from the hospital were detected, all possessing blaNDM; these isolates were from pa-
characterized at the CDC by pulsed-field gel electrophoresis tients who resided in the SICU (1 isolate) and cardiology and
(PFGE) and whole genome sequence (WGS) analysis. PFGE rehabilitation units (2 isolates each). During the period Oc-
was performed as described previously.12 Genome libraries tober 3–26, 4 rounds of SCs were performed for patients in
were constructed, and these were sequenced using Illumina 5 units where the initial 3 identified case patients had resided,
MiSeq (Illumina). Initial clustering of strains was performed including the neurosurgical intensive care unit (NSICU),
using kSNP 2,13,14 followed by manual reference mapping and BICU, SICU, and cardiology and rehabilitation units, as fol-
single-nucleotide polymorphism (SNP)–calling using open- lows: October 3, 55 (87%) of 63 patients; October 9, 48 (76%)
source software.15-18 MEGA 5 was used to review the final set of 63 patients; October 15–18, 54 (76%) of 71 patients; and
of parsimoniously informative SNPs and to perform boot- October 22–26, 49 (69%) of 71 patients. No additional NDM-
strapped phylogenetic analysis and visualization.19 A putative positive CRE isolates were identified.
transmission map was constructed by overlaying routes of Basic demographic and clinical characteristics of the 8 con-
transmission suggested by epidemiologic information and
firmed case patients are summarized in Table 1. The 3 initial
WGS analysis.
case patients had NDM-producing CRE isolated from clinical
respiratory cultures and were treated for NDM-producing
results
CRE infection; all survived their hospitalizations. The 5 col-
Epidemiologic Investigation onized case patients were not treated. No deaths were attrib-
During July–August 2012, carbapenem-resistant K. pneumo- utable to NDM-producing CRE; 1 colonized patient died due
niae (CRKP) were isolated from respiratory specimens from to unrelated causes.
2 patients located in different hospital units. The isolates were Case patients had resided on 11 different units for a median
submitted to the CDC for carbapenemase testing; both pos- of 18 days (range, 12–83 days) before cultures positive for
sessed blaNDM. Retrospective microbiology records review sub- NDM-producing CRE were obtained. Extensive overlap of
sequently identified a third CRKP isolate, cultured from a patient locations existed in hospital units as well as operating
respiratory specimen collected from a patient in June 2012; rooms (ORs) and computed tomography and magnetic res-
this isolate also possessed blaNDM. Two additional CRE isolates, onance imaging suites, which suggested multiple potential
a Citrobacter species and an Enterobacter species, were iden- routes of transmission (Figure 1; online only).
tified during the microbiology review. Only the Citrobacter Six of the 8 case patients were interviewed, including the
isolate was available for testing; it was NDM negative, but earliest patient with NDM-producing CRE. One colonized
KPC positive. case patient reported hospitalization in the Philippines during
The first round of rectal SCs was a limited survey per- May 2012, before admission to the affected hospital in July.
formed by hospital IC staff during the period August 27 to Because he had no exposures to the affected hospital before
August 29 among 14 (42%) of 33 patients on the burn and NDM-producing CRE was isolated from the earliest case pa-
figure 2. Pulsed-field gel electrophoresis (PFGE) patterns of 8 New Delhi metallo-b-lactamase (NDM)–producing carbapenem-resistant
Enterobacteriaceae isolates (A–C, 1–5) and 4 epidemiologically linked extended-spectrum b-lactamase (ESBL)–producing Klebsiella pneumo-
niae isolates, Colorado, May 27–September 26, 2012.
tient in June, this patient is unlikely to be the index patient. and uninvolved in the outbreak. Lack of documentation of
None of the case patients and none of the 197 patients ep- cleaning and disinfection of portable medical equipment be-
idemiologically linked to the earliest case patients had a re- tween patients and infrequent cleaning of certain patient care
ported history of travel or receipt of healthcare outside of areas (eg, radiology rooms and a rehabilitation gym) were
the United States. also noted.
In 2 instances, patients with NDM-producing CRE were
Infection Prevention Assessment transferred to other facilities during the outbreak period. Al-
Hospital IC staff received notification from microbiology lab- though communication between hospital case managers and
oratory personnel of all positive cultures, flagged charts of the 2 receiving facilities reportedly occurred, the receiving
patients with cultures positive for MDROs, and reviewed hos- facilities did not maintain CP for portions of the patients’
pital census lists daily to ensure that flagged patients were stay. Two rounds of SCs were therefore recommended for
maintained on CP, including upon intrafacility transfers; pa- patients at each of these facilities, which did not identify any
tient case managers were responsible for communicating pa- CRE.
tient MDRO status upon interfacility transfers. Upon rec-
ognition of the outbreak in August, patients with Laboratory Analysis
NDM-producing CRE were maintained on CP with a 1 : 1 PFGE results are illustrated in Figure 2. All case patient iso-
nursing ratio. When additional case patients were identified lates were highly related, as were the convenience sample of
through SCs in September, all case patients who remained in 4 ESBL-producing, NDM-negative K. pneumoniae isolates
the hospital were cohorted on the same hospital unit and from the hospital. WGS analysis identified 67 parsimoniously
assigned dedicated nursing staff and medical equipment, and informative SNP differences among these 12 isolates. A den-
a visitor policy restricting young children and limiting visitors drogram constructed from these SNPs (Figure 3) indicated
to 2 at a time was implemented. Additionally, hospital IC 3 clusters among these isolates that were indistinguishable by
staff performed targeted education about CRE and the im-
PFGE. Applying epidemiologic information, these clusters
portance of hand hygiene and CP adherence among staff on
were associated with particular hospital units. ESBL-produc-
units where case patients were residing.
ing K. pneumoniae isolates were interspersed among clusters
Observations identified lapses in hand hygiene and ad-
2 and 3.
herence to CP among physicians, nurses, and visitors in per-
ioperative areas. Of 102 observed opportunities for hand hy-
Putative Transmission Map
giene recorded in the BICU and NSICU, 28 (27%) were
missed by physicians, nurses, nursing assistants, and visitors; Transmission maps are included in Figure 4. In the map in
routine hospital IC surveillance indicated an average 94% Figure 4A, direct epidemiologic overlap (ie, in which both
and 90% compliance with hand hygiene in those units, re- patients occupied the same unit or patient care area during
spectively, and similar compliance in hospital units involved the same period before positive cultures were obtained) is
discussion
We describe what was the largest outbreak of NDM-produc-
ing CRE in the United States to date, in a state where NDM
had not been reported previously. No travel or healthcare
exposures outside of the United States were identified among
case patients or among 197 patients epidemiologically linked
to the earliest case patients that explained how NDM was
introduced into the hospital. The earliest identified case pa-
tients thus likely acquired NDM-producing CRE through
healthcare-associated transmission arising from an unde-
tected index patient, and our epidemiologic and laboratory
analysis was consistent with subsequent transmission within
the hospital.
Although an index patient was not identified, it is likely
that, before this outbreak, a person colonized with an NDM-
figure 3. Whole genome sequencing (WGS) dendrogram analysis producing organism through travel or healthcare exposure
of 8 New Delhi metallo-b-lactamase (NDM)–producing Klebsiella outside of the United States entered the hospital. Before this
pneumoniae isolates (A–C, 1–5) and 4 epidemiologically linked outbreak, 12 of 15 known patients with NDM-producing
extended-spectrum b-lactamase (ESBL)–producing K. pneumoniae organisms had a recent overnight stay in a healthcare facility
isolates (ESBL1–ESBL4), Colorado, May 27–September 26, 2012.
outside the United States (CDC, unpublished data). In re-
Preliminary WGS analysis demonstrates 3 clusters of isolates that
correspond to units in the hospital. The patients in cluster 1 (patients
sponse to increasing reports of NDM-producing isolates, the
1, 2, 4, and 5) were associated with either the cardiology or reha- CDC recently disseminated a health advisory recommending
bilitation units. The patients in cluster 2 (B and 3) had both resided that CRE isolated from patients with such a history within
in the surgical intensive care unit (SICU). Patients in cluster 3 (A the previous 6 months be tested for carbapenemases (at a
and C) had both resided in the burn and trauma intensive care unit minimum, KPC and NDM). In addition, screening these pa-
(BICU). tients for CRE at admission should be considered.20
Our investigation revealed likely healthcare transmission
indicated by solid gray arrows, and indirect overlap (ie, in of NDM-producing CRE at a US hospital and therefore high-
which patients were located on the same unit or patient care lights the risk for transmission of NDM-producing organisms
area but separated by time) is indicated by the dashed gray among persons receiving medical care inside the United
arrows. The directionality of the arrows indicates whether a States. Similar healthcare-associated NDM-producing CRE
clear sequence of one patient’s NDM-producing CRE posi- outbreaks have been reported during recent years in other
tivity versus another existed, as follows: unidirectional arrows countries.21-23 Preventing the spread of carbapenemases is a
indicate when one patient resided on a unit and had an NDM priority and requires an aggressive approach when these or-
isolate before overlapping with the other patient; a bidirec- ganisms are encountered. Recommended interventions for
tional arrow indicates when we cannot infer who transmitted controlling CRE can be found in the CDC CRE toolkit.24
to whom, such as when the patients had overlapped before No single source of transmission was identified in this
both having cultures positive for NDM collected on the same outbreak. Affected patients had prolonged, complex hospi-
day. Patients with isolates in the same WGS cluster are linked talizations with extensive exposures to medical devices and
by bidirectional black arrows, because the directionality of procedures. Epidemiologic tracing identified extensive over-
transmission cannot be inferred on the basis of genome se- lap among patients in multiple areas of the hospital through-
quence clustering. The map in Figure 4B includes only links out a 4-month period. A combination of epidemiologic and
that were substantiated by both epidemiologic and WGS in- laboratory analyses, including WGS, suggested multiple trans-
formation, and priority was given to direct over indirect ep- mission events occurring in at least 4 hospital units during
idemiologic links. This map illustrates strong evidence for this time. WGS analysis is an emerging technology in inves-
transmission occurring in 4 hospital units: BICU, SICU, car- tigation of healthcare-associated outbreaks.25-27 and offers the
diology unit, and rehabilitation unit. Certain transmission possibility of more finely discriminating among outbreak iso-
States: clonal expansion of multilocus sequence type 258. An- niae in Toronto, Canada. Infect Control Hosp Epidemiol 2013;
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ONE 2013;8(12):e81760. Toolkit: Guidance for Control of Carbapenem-resistant Entero-
15. Li H, Durbin R. Fast and accurate short read alignment with bacteriaceae (CRE). Atlanta, Georgia: CDC, 2012. http://www
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