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T A
acid can be made, In lytic transduction, phage nucleic acid takes over and
NAD+
A T
destroys bacterial DNA after 100-300 complete phage CO2
however, with several Malate
C G
are made. Krebs Cycle NAD+
combinations of
three bases, as long A mRNA T A
Lysogenic Transduction / Temperate NADH
H2O Fumarate
C
Ketogluteric acid
Prophage DNA / RNA is inserted into the bacteria and
U C G
as the order of the FADH 2 CO2
G A
integrated into the host chromosome. The prophage
T A
first two remains the NAD+
encodes a repressor that blocks virus replication. Succinate
same. FAD
C G G
Succinyl CoA
Without the repressor the virus replicates and the cell NADH
Example: The mRNA
G C C
lyses. If this repressor does not work, the cycle
codons for yeast ATP ADP
A A
becomes lytic.
T
Proline are:
A U T
CCU
G C C
CCC Energy Generation - Electron Transport Chain
C G G
CCA Oxidative Phosphorylation
A
CCG
U T
C
T A
C=Cytosine
A T
U=Uracil C1
a - CU Outside
G C
A=Adenine
T A
G=Guanine (Fe-S) Q (Fe-S) Q (Fe-S) a2 - CU Mitochondrial
Inner
G C
Any one of them can FMN Membrane
RNA Polymerase
T A
form Proline, one of b FAD Inside
20 amino acids in the
T A
64 possible triplet NADH Succinate 1/ 2 0
H20 2
sequences.
ADP ATP
2
MICROBIAL DIFFERENTATION TYPES OF MICROBIAL METABOLISM
Microbes live very diverse existences. Several are described below.
Media
TSP broth The Conversion Of Energy Unusual Lifestyles
Typical media used for general culturing, it has all of the
Photoautotroph Psychrophiles:
nutrients most bacteria require. It is a uniform light
brown. Uses light energy to convert CO2 and H2O to organic Cold-tolerant bacteria like listeria create serious prob-
Blood agar compounds. lems in foods. Cold treatment often slows the growth of
Agar, supplemented with sheep red blood cells, is one Example: Green algae normal bacteria, but not the growth of psychrophiles.
of the most common media used to plate bacteria. Photoheterotroph Extreme halophiles:
Blood agar is used to diagnose strep throat. Throat Uses light energy to convert organic carbon to useful
Can live in water with extreme salinity (up to 20%).
swabs are streaked onto blood agar to test for the pres- organic compounds.
Example: Purple or green bacteria Membrane bound bacteriorhodopsin uses light to pump
ence of beta-hemolytic streptococci. These bacteria out H+ ions. Bacteriorhodopsin imparts a pink color to
release hemolysis that lyse the red blood cells contained Chemoautotroph
Uses energy from H2S, NH3, and iron to convert CO2 to halophiles.
in the agar.
useful organic compounds. Thermoacidophiles:
Selective media
An example is media with bile salts and bright green dye. Example: Phototrophic /Nitrobacter These bacteria are tolerant of temperatures up to 80 C.
This selects for gram-negative organisms because gram- Chemoheterotroph They also prefer a pH range of 1- 4. They can be found
positive bacteria will not grow under these conditions. Uses organic molecules as a source of energy and car- in geysers and hot springs.
Differential media bon. Saprobes live off dead matter and parasites live off Methanogens:
Hektoen’s agar allows the visualization of Escherichia host body fluids.
Anaerobic decomposers, these bacteria use hydrogen to
coli because it contains lactose which is fermented to acid Example: Myxococcus
reduce carbon dioxide to methane in swamps and cattle
by E. coli and not used by many other enteric bacteria. intestines.
Enrichment media Spore formers:
Normal broth or agar is enriched with an unusual nutri- Nitrogen Usage
Nitrogen fixation Bacteria like Clostridium often encyst or form
ent that the bacteria being studied requires for growth.
Selenite, for example, is used to select for Salmonella Cyanobacteria can “fix,”or make available, atmos- endospores to protect themselves from drying out or
cultures. pheric nitrogen. Most living creatures cannot use from excessive heat or cold. These spores are very
atmospheric nitrogen to make protein. They must have resistant to harsh conditions due to their thick cell walls.
a source of organically bound nitrogen, nitrogen
Stains oxides or ammonia.
Simple stain N2———NH3 Microbes Used In Foods
A basic dye is used to color the sample. Nitrogen conversion Saccharomyces cerevisiae (A) Yeast: used in bread,
Acid-fast stain Nitrosomonas can convert ammonia (NH3) to the more
useable form, NO2. Several other chemoautotrophic beer and wine making, varieties of this organism and
Mycobacteria retain a carbolfuchsin red after an acid related genera are vitally important to these industries.
alcohol wash. A methylene blue counterstain is used to bacteria can do this as well.
NH3——NO2 Saccharomyces carlsbergensis (Yeast): used in
stain non-acid fast organisms blue.
Negative stain Denitrifying to atmospheric nitrogen lager beer making.
A dye with a negative stain is used to color the back- Pseudomonas species can denitrify NO2 or NO3 to Saccharomyces rouxii (Yeast): used to make soy
ground of a slide since the bacteria will not take up a atmospheric nitrogen. As facultative anaerobes, this sauce.
negatively charged stain. allows them to use the oxygen for more efficient ener- Lactococcus lactis (B) Bacteria: producer of bac-
Gram stain gy production.
teriocins, metabolites which kill other bacteria,especial-
Crystal violet, iodine, alcohol, and safranin red are ly sporeformers like Clostridia botulinum. These cocci
used. Gram positive bacteria retain the crystal violet protect the public from botulism in dried sausage that is
stain and appear purple-blue. Gram-negative bacteria Oxygen Use
Obligate aerobes lower in nitrate.
lose the blue color and pick up the red of the safranin
counterstain. These organisms must have a continual source of oxy- Leuconostoc mesenteroides Bacteria: creates
gen. They often have long generation times. One lactic acid for the fermentation of sauerkraut.
Mycobacterium tuberculosis generation can take up to Acetobacter and Gluconobacter (C) species
Microscopes one week on agar. bacteria: used in the production of vinegar.
Microaerophilic or microbes Penicillium roqueforti (D) and species of fungi:
The Light Microscope These organisms need small amounts of oxygen and
Our ability to differentiate between types of microbes cheeses, roquefort dressing.
higher concentrations of CO2; high oxygen concentra-
improved dramatically with the advent of the compound Eremothecium ashbyi
tion inhibits growth. Certain strains of Streptococcus
(two lense) light microscope. A slide is made of select- sanginosus, Streptococcus mitis, Streptococcus mutans Used to make the B-vitamin riboflavin.
ed microorganisms, stained and viewed on the stage. are examples.
The objectives are located on a turning turret below the Facultative anaerobes
oculars, allowing selection of different magnifications These organisms prefer a small amount of O2, but can
as light passes through. A D
live without it. They use anaerobic glycolysis in the
The Dark-field Microscope - There is a limit to absence of oxygen.
the resolution of the compound light microscope, and Obligate anaerobes
when an object is too small or thin to be seen in the light These organisms lack key molecules in the electron
microscope, it can sometimes be viewed using a dark- transport system and do not reduce oxygen. They will
field microscope. There is a special light condenser that either die in the presence of oxygen or produce toxins.
produces a hollow cone of light. Microbes appear white Clostridia and Bacteroides are examples.
against a black background.
B
The Phase Contrast Microscope - This allows
small, dense particles like internal organelles to be Electron microscope Light microscope
viewed without staining. In other microscopes, organ-
isms and organelles must be stained for viewing. Electron gun
Magnetic
condenser Ocular
The Electron Microscope lens lens
Transmission Electron Microscopy
TEM has a resolution of greater than 1 nm and allows Aperture
Magnetic
the viewing of organelles, subcellular components and objective Specimen
Objective
even macromolecules. Tissue sections of 0.1 um or less lens lens C
are best viewed in a vacuum processed slide. Uranyl Magnetic
intermediate Aperture Specimen
acetate is used as a negative stain and freeze-etching is lens
a common technique.
Condenser
Scanning Electron Microscope - SEM has the Magnetic lens
ability to display the surface of an object using electrons projection Aperture
as a fine probe. lens Light source
Final image
3
REPRODUCTION OF FUNGI FERMENTATION (Anaerobic) THE IMMUNE SYSTEM
Glucose + Other electron acceptors Pyruvate
Homolactic Acid Fermentation
Asexual Adaptive
Pyruvate Lactic acid
Blastospores: B cells
Yeast can reproduce by fission, sporulation or budding. Found in Lactobacilli / Streptococci
B cells, plasma cells or B lymphocytes create and
Budding, or blastospore formation is the most common Alcoholic Fermentation secrete antibody. Antibodies are protinaceous mole-
method. A piece of the mother cell surface bubbles out Pyruvate ETOH cules that mirror the stimulating antigen.
and enlarges, producing a “bud.” B cells have 2 functions:
Chlamydospores: Found in Yeast
1. Antibody formation 2. Memory
Resting spores found in old dry cultures, they are pro- Mixed Acid Fermentation
duced when the hyphae swell and create a thick wall There are 5 major types of antibody:IgG, IgA, IgD, IgE,
Pyruvate OAA Succinic acid IgM.
around themselves.
Arthrospores: Pyruvate Acetyl CoA ETOH T cells
When hyphae break apart, tube-shaped thick spores, Pyruvate Acetyl CoA Acetic acid Are responsible for all antigens or microbes that pass
called arthrospores are formed. Pryuvate Formic acid H2 + CO2 through the innate system and do not require an anti-
Conidiospores: Pyruvate Lactic acid body response. Fungal pathogens are often an example
Formed on conidiophores or stalks, they are pinched off Found in Enteric bacteria (E. coli, e.g.) of invaders that stimulate T cells. T cells also seek out
and sent into the surrounding environment. and destroy virus- infected cells.
Sporangiospores: Butylene Glycol Fermentation Null cells
Formed in a sporangium, a sac like an ascus but larger. Pyruvate Acetoin 2,3 Butylene glycol These function in coordination with B and T cells to
Spore lands in Found in Enterobacter / Bacillus mediate defenses. They can be distinguished from B
viable location
Released spores and T cells, by a large cytoplasmic granule seen under
Germination Propionic Acid Fermentation
the microscope. They help out cells from the innate sys-
Pyruvate OAA Succinic Methylmalonyl-CoA
tem as well as B and T cells.
2-Propionic Acid
Found in Veillonella / Propionibacterium
Asexual Colony growth Innate
spore-bearing Butyric Acid / Butanol / Acetone
structure Fermentation The innate system includes protection against non-
Sexual Pyruvate Acetyl CoA Acetic Acid ETOH specific invaders. There are 4 major aspects to this
Basidiospores: Pyruvate Crotonyl CoA Butyryl CoA protection.
Characterized as clinging to the end of a basidium in a 1. Barriers 2. Residents
Butanol or Butyric acid
type of fungi called basidiomycetes, these are found in Digestive juices Commensal bacteria
Pyruvate Acetyl CoA Acetoacetyl Body temperature
the common mushroom (Agricaris campestris), in
bracketts, puffballs and other large fungi. Acetone Isopropyl alcohol Intact skin
Ascospores:
Characterized by the sac they develop in, the ascus, 3. Protective cells 4. Soluble factors
these are usually found in a larger structure called an ANAEROBIC RESPIRATION WITH Macrophages Interferons
ascocarp. Ascomycetes are the fungal division in which INORGANIC IONS Monocytes Interleukins
ascospores are found. Sulfate Reducers Natural killer cells Tumor necrosis factor
Zygospores: Neutrophils Lytic enzymes
A zygospore is formed from the fusion of two “mating” Desulfovibrio / Desulfotomaculum
Obligate anaerobes, they turn sulfate into sulfide. Eosinophils
types of hyphae. It is almost double the size of the adja-
cent cell. It becomes thick-walled and is characteristic SO4 + H2 S + H2O. Granulocytes
of the division zygomycetes, an example of which is
common black bread mold or Rhizopus stolonifer. Nitrate Reducers
Oospores: Escherichia / Micrococcus / Rhizobium / Bacillus /
Enterobacter Stem cell
These result from the fertilization of an oogonium by an IMMUNE
antheridium when the fungi is in a vegetative cycle. These are facultative anaerobes, microbes that can use CELLS
nitrate as a final electron acceptor instead of oxygen- Lymphoid
Opposite mating types (+ and -)
- mating type like aerobic respiration. They can survive using aerobic Neutrophils precursors
+ mating type
respiration as well as fermentative means. This is also
Fusion of cells Haploid Myeloid
known as denitrification. precursors
Unfused nuclei vegetative Bursa
cells NO3 + H2 N2 + H2O Thymus
Growth of hyphae equivalent
and spore-forming Fusion of Methane Bacteria
structures nuclei
Methane bacteria are found in the digestive systems of Basophils
2n nucleus
Diploid sexual ruminating animals such as cows or deer.
Fusion of nuclei to spore Monocytes
form diploid (2n) CO2 + H2 CH4 + H2O
spore-forming cell Meiosis B cells C cells
Meiosis
Haploid (n)
Release of nucleus Medical Mycology
haploid spores Cell
Fungi are divided into two forms: yeast and molds. Eosinophils mediated
Germination Haploid Germination Yeasts are single-celled, round and small (4 um in Macrophages Antibodies immunity
hyphae diameter)when compared to molds (hyphae can be 5
Formation of
n n haploid hyphae n n n
um long and 3-4 um wide).
U.S.$4.95 / CAN.$7.50
Authors: Heather MacLean Walters, MA, MS, PhD
PHOTOSYNTHESIS / Mike Roner, PhD
Edited by: Randy Brooks, PhD
RESPIRATION / FERMENTATION
The respiration equation is really the photosynthesis ISBN-13: 978-142320290-5
equation backwards under aerobic conditions. Oxygen ISBN-10: 142320290-2
is either the electron donor or acceptor, depending upon
which direction you look. Usually, fermentation is res-
piration under anaerobic conditions. While there are Molds are usually multicellular and characterized by
exceptions to every rule, this is a basic way to look at the long filamentous structures called hyphae. These
use of carbohydrates for energy generation in the cell. hyphae can be coenocytic (no cross-walls) or septate hundreds of titles at Customer Hotline #
PHOTOSYNTHESIS (having cross-walls). The hyphae extend themselves quickstudy.com 1.800.230.9522
CO2 + H2O Glucose + O2 and intertwine into a mat called a mycelium, in which Note to Student: Due to its condensed format,
use this QuickStudy ® guide as a Biology
Uses energy they share chemical information and nutrients. guide, but not as a replacement for assigned
class work.
Dimorphic forms are an unusual combination of the All rights reserved. No part of this publication
RESPIRATION (Aerobic) two (molds and yeasts). This dimorphism allows them
may be reproduced or transmitted in any form,
or by any means, electronic or mechanical,
Assuming Oxidate Phosphoration to exist as either type when conditions merit and is
including photocopy, recording, or any infor-
mation storage and retrieval system, without
Glucose + O2 CO2 + H2O advantageous from a survivability and virulence written permission from the publisher.
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