You are on page 1of 9

ORIGINAL RESEARCH

published: 31 July 2018


doi: 10.3389/fmicb.2018.01670

Type M Resistance to Macrolides Is


Due to a Two-Gene Efflux Transport
System of the ATP-Binding Cassette
(ABC) Superfamily
Francesco Iannelli 1* , Francesco Santoro 1 , Maria Santagati 2 , Jean-Denis Docquier 1 ,
Elisa Lazzeri 1 , Gabiria Pastore 1 , Marco Cassone 1† , Marco R. Oggioni 1† ,
Edited by: Gian M. Rossolini 1† , Stefania Stefani 2 and Gianni Pozzi 1*
Fiona Walsh,
1
Maynooth University, Ireland Department of Medical Biotechnologies, University of Siena, Siena, Italy, 2 Section of Microbiology, Department
of Biomedical and Biotechnological Sciences, University of Catania, Catania, Italy
Reviewed by:
Xu Jia,
Chengde Medical College, China The mef(A) gene was originally identified as the resistance determinant responsible
Luca A. Vitali,
University of Camerino, Italy for type M resistance to macrolides, a phenotype frequently found in clinical isolates
*Correspondence: of Streptococcus pneumoniae and Streptococcus pyogenes. MefA was defined as a
Francesco Iannelli secondary transporter of the major facilitator superfamily driven by proton-motive force.
francesco.iannelli@unisi.it
However, when characterizing the mef(A)-carrying elements Tn1207.1 and 81207.3,
Gianni Pozzi
gianni.pozzi@unisi.it another macrolide resistance gene, msr(D), was found adjacent to mef(A). To define the
† Present address: respective contribution of mef(A) and msr(D) to macrolide resistance, three isogenic
Marco Cassone, deletion mutants were constructed by transformation of a S. pneumoniae strain
Division of Geriatric and Palliative Care
Medicine, University of Michigan, carrying 81207.3: (i) 1mef(A)–1msr(D); (ii) 1mef(A)–msr(D); and (iii) mef(A)–1msr(D).
Ann Arbor, MI, United States Susceptibility testing of mutants clearly showed that msr(D) is required for macrolide
Marco R. Oggioni,
resistance, while deletion of mef(A) produced only a twofold reduction in the minimal
Department of Genetics, University
of Leicester, Leicester, inhibitory concentration (MIC) for erythromycin. The contribution of msr(D) to macrolide
United Kingdom resistance was also studied in S. pyogenes, which is the original host of 81207.3. Two
Gian Maria Rossolini,
Department of Experimental isogenic strains of S. pyogenes were constructed: (i) FR156, carrying 81207.3, and (ii)
and Clinical Medicine, University FR155, carrying 81207.3/1msr(D). FR155 was susceptible to erythromycin, whereas
of Florence, Florence, Italy
FR156 was resistant, with an MIC value of 8 µg/ml. Complementation experiments
Specialty section: showed that reintroduction of the msr(D) gene could restore macrolide resistance in
This article was submitted to 1msr(D) mutants. Radiolabeled erythromycin was retained by strains lacking msr(D),
Antimicrobials, Resistance
and Chemotherapy,
while msr(D)-carrying strains showed erythromycin efflux. Deletion of mef(A) did not
a section of the journal affect erythromycin efflux. This data suggest that type M resistance to macrolides in
Frontiers in Microbiology streptococci is due to an efflux transport system of the ATP-binding cassette (ABC)
Received: 22 February 2018 superfamily, in which mef(A) encodes the transmembrane channel, and msr(D) the two
Accepted: 04 July 2018
Published: 31 July 2018 ATP-binding domains.
Citation: Keywords: ABC transporter, macrolide efflux, 81207.3, prophage, mef(A), msr(D), Streptococcus pneumoniae,
Iannelli F, Santoro F, Santagati M, Streptococcus pyogenes
Docquier J-D, Lazzeri E, Pastore G,
Cassone M, Oggioni MR,
Rossolini GM, Stefani S and Pozzi G
(2018) Type M Resistance
INTRODUCTION
to Macrolides Is Due to a Two-Gene
Efflux Transport System of the
Macrolides are antibiotic compounds composed of 14 (erythromycin and clarithromycin), 15
ATP-Binding Cassette (ABC) (azithromycin), or 16 (josamycin, spiramycin, tylosin)-membered lactones to which amino and/or
Superfamily. Front. Microbiol. 9:1670. neutral sugars are linked (Roberts et al., 1999; Roberts, 2008). Resistance to macrolides in
doi: 10.3389/fmicb.2018.01670 streptococci is usually associated with two major mechanisms: (i) target site modification, arising

Frontiers in Microbiology | www.frontiersin.org 1 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

from the presence of erm(B) or erm(A) subclass erm(TR) tandem pair (Iannelli et al., 2004; Ambrose et al., 2005; Vitali
belonging to the class of erm (erythromycin ribosome et al., 2016; Zhang et al., 2016; Tatsuno et al., 2018).
methylation) methylase genes (Leclercq and Courvalin, 1991; To assess the relative contribution of mef (A) and msr(D)
Seppala et al., 1998) and (ii) drug efflux, associated to the to macrolide efflux, we generated in-frame isogenic mutants
presence of mef (A) (macrolide efflux) genes (Clancy et al., 1996; of S. pneumoniae and S. pyogenes carrying mef (A)-msr(D) to
Sutcliffe et al., 1996; Tait-Kamradt et al., 1997). Methylation of be used in functional studies. Mutant strains were tested by
23S rRNA causes a reduced binding to macrolide, lincosamide, (i) determining the minimal inhibitory concentration (MIC)
and streptogramin B antibiotics (MLSB phenotype), whereas of erythromycin and (ii) assaying the actual intracellular
active efflux of macrolides confers a low level of resistance to accumulation of radiolabeled erythromycin. Results of functional
resistance only to 14- and 15-membered macrolides, but not to studies were in accordance with bioinformatics analysis
16-membered macrolides, lincosamides, and streptogramin B predicting that the tandem mef (A)-msr(D) gene pair encodes
antibiotics (M phenotype; Weisblum, 1995; Roberts et al., 1999). an efflux transport system of the ATP-binding cassette (ABC)
The macrolide efflux mef (A) gene was originally described superfamily.
in Streptococcus pyogenes (Clancy et al., 1996) while the allelic
variant mef (E) was first described in Streptococcus pneumoniae
(Tait-Kamradt et al., 1997). These variants are highly homologous MATERIALS AND METHODS
(about 90% nucleotide identity) and are grouped in the same
mef (A) class of macrolide resistance genes (Roberts et al., Bioinformatic Softwares
1999). The mef (A) gene was not found only in S. pyogenes and Protein sequence analysis was performed with the softwares
S. pneumoniae, but also in a wide variety of other streptococcal Phyre2 (Kelley et al., 2015) and TMpred. Conserved
species such as Streptococcus agalactiae, Streptococcus mitis, aminoacids were identified with the PSI-BLAST multiple
Streptococcus oralis, and Streptococcus salivarius, in other sequence alignment. Terminator sequence was predicted with
Gram-positive genera including Corynebacterium, Enterococcus, RNAstructure ver. 5.02 (Mathews Lab). Nucleotide sequence
Micrococcus, and Staphylococcus, and in Gram-negative genera analysis was performed using Microbial Nucleotide BLAST with
such as Acinetobacter, Bacteroides, and Neisseria (Roberts et al., the Megablast algorithm2 .
1999; Klaassen and Mouton, 2005; Santagati et al., 2009). In
some countries, the mef (A) gene has become more common Bacterial Strains and Growth Conditions
than erm(B) in macrolide-resistant S. pneumoniae and S. pyogenes Streptococcal strains used in this work and their relevant
(Green et al., 2006; Reinert et al., 2006; Rudolph et al., 2013) properties are reported in Table 1. Bacteria were routinely
and it has been used as a marker for molecular epidemiology grown in Tryptic Soy Broth (TSB) or Tryptic Soy Agar
studies (Daly et al., 2004; Klaassen and Mouton, 2005; Amezaga (Difco) supplemented with 3% horse blood at 37◦ C. When
and McKenzie, 2006). The mef (A) allelic variants are carried required, 500 µg/ml streptomycin, 10 µg/ml novobiocin,
by different genetic elements. In S. pneumoniae, we described 0.5 µg/ml erythromycin, 100 µg/ml spectinomycin, and 3 µg/ml
a 7244-bp non-conjugative element named Tn1207.1 carrying chloramphenicol were added to both liquid and solid media.
mef (A), whereas mef (E) was found to be carried by the 5532-
bp pneumococcal genetic element (mega; Santagati et al., 2000; Construction of the Isogenic
Gay and Stephens, 2001; Del Grosso et al., 2002, 2006). In S. pneumoniae Mutant Strains
S. pyogenes, mef (A) is carried by 81207.3, a 52,491-bp prophage
To allow construction of mutants deleted for the macrolide
which we found in the erythromycin-resistant clinical strain
resistance genes object of this study, and to facilitate further
2812A, transferable to a variety of streptococcal species and
analysis, it was essential to work in a S. pneumoniae strain
whose left 7244-bp sequence is 100% identical to pneumococcal
which is readily transformable and whose genomic sequence is
Tn1207.1 (Santagati et al., 2003; Pozzi et al., 2004; Iannelli et al.,
available (Hoskins et al., 2001). For this reason, we transferred
2014a). Other mef (A)-carrying prophages in clinical isolates of
81207.3 to the chromosome of unencapsulated laboratory strains
S. pyogenes include 810394.4 (Banks et al., 2003), 8m46.1, and
of S. pneumoniae which are derived from type 2 strain D39
its variant VP_00501.1 (Brenciani et al., 2004, 2010; Vitali et al.,
(Iannelli et al., 1999; Pearce et al., 2002).
2016).
Integration of Tn1207.1 or 81207.3 into the chromosome of
At first, Mef(A) was defined as a secondary transporter of the
S. pneumoniae occurs within the cds of celB, a gene involved
major facilitator superfamily (MFS)1 and considered to be the
in DNA uptake during transformation, and disruption of celB
only gene product responsible for type M macrolide resistance, as
leads to impairment of competence for genetic transformation in
shown by cloning and functional characterization in Escherichia
S. pneumoniae strains carrying Tn1207.1 or 81207.3 (Santagati
coli (Clancy et al., 1996). However, in mef (A)-carrying genetic
et al., 2000, 2003). For this reason, strain FR125 was constructed
elements such as Tn1207.1 and 81207.3, another macrolide
in which celB was deleted and integration of 81207.3 after
resistance gene, msr(D), was always found adjacent to mef (A),
mating occurred at a different chromosomal location (Iannelli
and msr(D) was shown to contribute to the macrolide efflux
and Pozzi, unpublished results). Subsequently, strain FR183, a
resistance of streptococcal strains carrying the mef (A)–msr(D)
2
https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE~=~BlastSearch&BLAST_
1
http://www.tcdb.org/ SPEC~=~MicrobialGenomes

Frontiers in Microbiology | www.frontiersin.org 2 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

TABLE 1 | Bacterial strains.

Strain Relevant propertiesa Origin (references)

S. pneumoniae
D39 Type 2 Avery’s strain Pearce et al., 2002; Lanie et al., 2007
Rx1 Unencapsulated derivative of D39 Smith and Guild, 1979; Pearce et al., 2002
DP1004 Unencapsulated derivative of D39; str-41; SmR Salles et al., 1992; Iannelli and Pozzi, 2004
FP11 Rx1 unencapsulated competence deficient derivative, 1comC; NovR , CmR Iannelli and Pozzi, 2007; Santoro et al., 2010
FR122 FP11 derivative carrying 81207.3; NovR , CmR , EmR This study
FR125 Rx1 unencapsulated competence deficient derivative carrying 81207.3; 1comC, Iannelli and Pozzi, unpublished results
str-41, 1celB; CmR , SmR , SpcR , EmR
FR183 DP1004 derivative carrying 81207.3 (by transformation with FR125 chromosomal This study
DNA); SmR , EmR
FP39 FR183 derivative, 1mef(A) and 1msr(D); SmR , CmR This study
FP40 FR183 derivative, 1mef(A); SmR , EmR , CmR This study
FP59 FR183 derivative, 1msr(D); SmR , SpcR This study
FP92 FP59 derivative, msr(D) (by transformation with a msr(D)-containing PCR fragment This study
amplified from FR183); SmR , EmR
FR139 FP11 derivative carrying 81207.3 – 1msr(D) (by conjugation with FP59); NovR , SpcR This study
S. pyogenes
D471 Streptomycin-resistant serotype M6 strain from RU collection, SmR Scott and Fischetti, 1983
FR156 D471 derivative carrying 81207.3 (by conjugation with FR122); SmR , EmR This study
FR155 D471 derivative carrying 81207.3 – 1msr(D) (by conjugation with FR139); SmR , SpcR This study
FR160 FR155 derivative carrying 81207.3 (by conjugation with FR122); SmR , EmR , SpcR This study
a nov-1 and str-41 indicate point mutations conferring resistance to novobiocin and streptomycin, respectively. Nov, novobiocin; Sm, streptomycin; Cm, chloramphenicol;
Tc, tetracycline; Em, erythromycin; Spc, spectinomycin; Km, kanamycin.

transformable S. pneumoniae DP1004 derivative strain carrying corresponding to the 532 nucleotides located downstream of
81207.3 integrated elsewhere than celB, was obtained by the msr(D) stop codon. The ami/cat chloramphenicol-resistance
transformation with the chromosomal DNA purified from FR125 cassette was obtained with the primer pair IF38/IF39 using the
(Table 1). E. coli pEVP3 plasmid as template (Claverys et al., 1995). The
flanking regions were amplified, respectively, with the primer
Matings pairs IF105/F35 and IF183/IF175 from chromosomal DNA of
Mating experiments were performed as already described FR183. To minimize possible polar effects, the mef (A) coding
(Iannelli and Pozzi, 2007). Briefly, cells were grown separately in sequence (cds) was deleted in-frame by allelic replacement with
presence of appropriate antibiotics until the end of exponential the cds of the cat chloramphenicol-resistance gene. The cat cds
phase (OD590nm = 0.8). Cells were mixed at 1:10 ratio was amplified with primer pair IF184/IF39 from a cat(pC194)-
(Donor/Recipient), harvested by centrifugation and plated. carrying strain (Iannelli et al., 2014b) and flanked by a 1116-
Following 4-h incubation, cells were harvested by scraping bp DNA region located upstream mef (A) start codon and a
the plates. Selection of recombinants was carried out with DNA fragment spanning the 449 nucleotides downstream of
a multilayer plating procedure. Transfer frequencies were the mef (A) stop codon, obtained, respectively, with the primer
determined by plating alone each parent strain that was also pairs IF176/IF182 and IF185/F20 from FR183 chromosome.
checked for spontaneous antibiotic resistance acquisition. A genetic construct containing the ami/spc cassette flanked by
the 281-bp and 532-bp DNA fragments located respectively
Oligonucleotide Primers upstream and downstream of msr(D) cds was produced to
Oligonucleotide primers used for mutagenesis, sequencing, and inactivate msr(D). The primer couple IF100/IF101 was used to
PCR selection of recombinant strains are listed in Supplementary amplify the spectinomycin-resistance cassette from the pR412
Table S1. plasmid (Martin et al., 2000). This cassette was flanked by
the msr(D) flanking segments amplified with the primer pair
PCR Mutagenesis IF171/IF174 from FR183 chromosome. Linear PCR constructs
Gene splicing by overlap extension (gene SOEing) was used to were used directly as donor DNA in transformation experiments.
generate the mutagenic constructs for gene deletions as already Mutant strains were selected for acquisition of chloramphenicol
described (Pearce et al., 2002; Iannelli and Pozzi, 2004). The or spectinomycin resistance and the desired mutations were
deletion of mef (A) and msr(D) genes was obtained with a confirmed by sequencing. PCR-based selection of S. pneumoniae
mutagenic construct containing the ami/cat cassette flanked complemented strains was carried out with the primers pair
at the left by a 195-bp DNA fragment corresponding to IF169/IF170 according to the protocol already described (Iannelli
nucleotides 3112–3307 of 81207.3 and at the right by a fragment and Pozzi, 2004).

Frontiers in Microbiology | www.frontiersin.org 3 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

Erythromycin Sensitivity Determination domains, which have the potential to form six transmembrane
The MIC was assessed by microdilution techniques as suggested helices (Figure 1).When the protein sequence of Msr(D) was
by the (Clinical and Laboratory Standards Institute [CLSI], analyzed by the PSI-BLAST multiple sequence alignment, it was
2017). Briefly, MICs were determined as follows: bacterial cells possible to show the presence of two nucleotide binding domains
were grown until exponential growth phase (OD590nm = 0.25) (NBDs) typical of ATP-binding transporters (spanning amino
in TSB medium and stored at −70◦ C in 10% glycerol, then acids 12–154, and 304–463, Genbank AAG12999.1), and a long
frozen cultures were thawed and diluted at 5 × 104 CFU/ml predicted alpha helical structure (spanning amino acids 181–
in TSB broth containing serial twofold dilutions of antibiotic, 227) between the two NBDs (Figure 1). Altogether, mef (A) and
and incubated at 37◦ C for 18 h. Bacterial growth was msr(D) appear to constitute a two-gene efflux transport system of
determined turbimetrically using the microplate ELISA reader the ABC superfamily, mef (A) encodes the pore (transmembrane
VERSAmax (Molecular Devices). Results are presented as the channel), and msr(D) the two ATP-binding domains.
geometric mean and are derived from at least three experiments.
S. pneumoniae ATCC49619 was used as reference control strain mef(A) and msr(D) Are Found in Tandem
as recommended (Clinical and Laboratory Standards Institute in Bacterial Genomes
[CLSI], 2017). The mef (A) gene sequence (GenBank AF227520) was used as a
query to interrogate the database of 20,187 complete Microbial
Erythromycin Efflux Assay genomes (accessed in May 2018). The mef (A) gene was found
Frozen starter culture was diluted 100-fold in 100 ml warm in 37 genomes, of those: 29 were streptococcal genomes and
TSB medium and grown at 37◦ C until an optical density at eight belonged to other genera (namely Turicibacter, Clostridium,
590 nm of 0.25. Radiolabeled erythromycin [N-methyl-14 C] Enterococcus, Clostridioides, Gardnerella, and Bacillus). In 33 out
(50 µCi/mmol, purchased from Bio Trend, Germany) was added of 37 cases, the mef (A) gene was in tandem with msr(D), while
at a final concentration of 0.2 µg/ml (Sutcliffe et al., 1996). in the remaining four cases, msr(D) was substituted by a gene
Erythromycin uptake was assessed by taking 5-ml samples from coding for a putative nucleotidyltransferase. No information on
each culture every 10 min for 40 min after the addition of macrolide resistance was available for these four genome strains.
[14 C]erythromycin, filtering samples with prewet GF/C glass
microfiber filters (Whatman), and washing the filters twice with Type M Macrolide Resistance Depends
5 ml of a 0.9% NaCl and 1 µg/ml erythromycin solution (Sutcliffe on the ATP-Binding Transporter Msr(D)
et al., 1996). Filters were dried O.N., dissolved in 10 ml of To define the respective contribution of mef (A) and msr(D)
Insta-Gel Plus liquid (Packard) and the [14 C] erythromycin gene products to macrolide efflux resistance, isogenic deletion
cell-associated was counted with a TRI-CARB 2000 CA Liquid
Scintillation Analyzer (Packard).

RESULTS
mef(A) and msr(D) Encode an ABC
Transport System
In clinical isolates of macrolide resistant streptococci, the
macrolide efflux gene, mef (A), is found in tandem with
msr(D), a gene which encodes for an ATP-binding transporter
(Santagati et al., 2000, 2003; Gay and Stephens, 2001; Banks FIGURE 1 | The mef(A)–msr(D) operon is 3290-bp-long and includes a single
et al., 2003; Brenciani et al., 2004). Bioinformatic analysis promoter sequence (P) and a terminator sequence (T). Mef(A) contains 12
of the prototypic tandem mef (A)-msr(D) from Tn1207.1 transmembrane domains spanning the whole protein (red bars). Msr(D)
(Santagati et al., 2000) and their flanking regions revealed contains two nucleotide binding domains (NBDs, blue boxes) connected by
an alpha helical structure (green cylinder). Each NBD has seven motifs (blue
that they constitute a two-gene operon which is 3290 bp long,
bars): (1) the “A-loop” that provides an aromatic side chain residue that
with only one putative promoter sequence −35 TTGCTT, interacts with the adenine ring of bound nucleotide (phenylalanine in both
extended −10 TGTGTTAAAAT (nucleotides 2890–2895 NBDs); (2) the “Q-loop” involved in the interaction with the transmembrane
and 2908–2918, respectively, Genbank AF227520) located domain and with the γ-phosphate through a water bond; (3) the “P-loop” (or
upstream of the mef (A) start codon and a single predicted “Walker-A” motif) that binds the nucleotide; (4) the “LSGGQ motif” (also called
“C-loop” or “ABC signature motif”) which contacts the nucleotide in the
terminator sequence (nucleotides 6143–6179, Genbank ATP-bound state; (5) the “Walker-B” motif that has a conserved glutamate
AF227520) located downstream of the msr(D) stop codon. residue that orchestrates the nucleophilic attack on ATP via a water molecule;
As previously demonstrated (Ambrose et al., 2005; Chancey (6) the “D-loop” involved in the contact between the two NBDs through an
et al., 2015), RT-qPCR analysis confirmed that mef (A) and interaction with the Walker-A asparagine residue; and (7) the “switch motif”
that contains a histidine side chain thought to contribute to the catalytic
msr(D) genes were part of a single transcriptional unit (data
reaction. Both C-loop motifs of Msr(D), MSGGE and LSGGE, are not identical
not shown). Sequence analysis of the Mef(A) protein with to the consensus (LSGGQ).
TMpred showed the presence of 12 predicted transmembrane

Frontiers in Microbiology | www.frontiersin.org 4 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

mutants were constructed in S. pneumoniae for the mef (A)– TABLE 2 | Sensitivity to erythromycin.
msr(D) tandem pair carried by two different genetic elements
Strain Genotype MIC of erytromycin (µg/ml)a Phenotype
(Figure 2). Three isogenic deletion mutants were constructed
in the 81207.3-carrying strain FR183: (i) FP39, 1mef (A)– Streptococcus pneumoniae
1msr(D); (ii) FP40, 1mef (A); and (iii) FP59, 1msr(D). In FR183 mef(A), msr(D) 8 Resistant
FP39, a 2748-bp DNA fragment (position 3308–6055, GenBank FP39 1mef(A), 1msr(D) 0.06 Sensitive
AY657002) containing mef (A) and msr(D) was deleted and FP40 1mef(A), msr(D) 4 Resistant
replaced with the 850-bp ami/cat cassette. In FP40, a 1218- FP59 mef(A), 1msr(D) 0.12 Sensitive
bp DNA fragment (position 3255–4472, GenBank AY657002) DP1004b – 0.03 Sensitive
containing the cds of mef (A) was deleted and replaced in-frame Streptococcus pyogenes
with the 651-bp cds of the cat gene. In FP59, a 1464-bp DNA FR156 mef(A), msr(D) 8 Resistant
fragment (position 4592–6055, GenBank AY657002) containing FR155 mef(A), 1msr(D) 0.12 Sensitive
the msr(D) cds was deleted and replaced with the 894-bp ami/spc D471b – 0.03 Sensitive
cassette (Figure 2 and Table 1). a MIC interpretative standard: sensitive ≤ 0.25 µg/ml, intermediate = 0.5 µg/ml, and
Sensitivity to erythromycin of the S. pneumoniae strains resistant ≥ 1 µg/ml.
b DP1004 and D471 are parental erythromycin sensitive strains used as controls.
carrying mef (A)–msr(D) and of their isogenic mutants was tested
in liquid medium. It was clearly shown that msr(D) is required for
macrolide resistance (Figure 1 and Table 2). Deletion of mef (A) variants of mef (A) and msr(D) originally found in a macrolide-
produced only a twofold reduction of the MIC, while deletion resistant clinical strain of S. pneumoniae formerly described as a
of msr(D) produced a 64-fold MIC decrease (8 to 0.12 µg/ml), “mef (E)-positive isolate” (GenBank AF376746) (Del Grosso et al.,
and when both genes were deleted, the MIC decreased 128-folds 2002, 2004). Deletion mutants were constructed and tested for
(Table 2). Identical results were also obtained using the allelic erythromycin resistance. Results on MIC reduction were identical

FIGURE 2 | The mef(A)-msr(D) operon, carried by 81207.3, confers type M resistance to macrolides. Isogenic mutants were produced in a 81207.3-carrying
S. pneumoniae strain. CDSs were deleted by allelic replacement with mutagenic antibiotic resistance cassettes. In order to minimize polar effect, mef(A) CDS was in
frame deleted with the chloramphenicol resistance cat CDS. The genotype and relative erythromycin resistance phenotype of the pneumococcal isogenic strains are
schematized. The genes are reported as arrows while dotted lines indicate gene deletions; the transcriptional promoter (P) and the putative transcriptional terminator
(T) of the operon are reported.

Frontiers in Microbiology | www.frontiersin.org 5 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

to those observed for the mef (A)–msr(D) alleles described above erythromycin, while when both mef (A) and msr(D) are present,
(data not shown). the MIC is increased by 256-folds (Table 2).
The 81207.3/1msr(D) S. pyogenes FR155 was complemented
Complementation of the msr(D) Deletion in trans transferring a wild type 81207.3 element from
To confirm the role of msr(D) in determining type M FR122. Recombinants were selected for erythromycin resistance
resistance to macrolides, deletion of msr(D) was complemented acquisition and in a representative recombinant, FR160, the
in S. pneumoniae FP59 carrying 81207.3/1msr(D). Competent presence of both the wild type and mutated form of 81207.3 was
cells of FP59 were transformed with a 2206-bp PCR fragment confirmed by DNA sequencing. FR160 showed an erythromycin
containing msr(D) obtained from wild type 81207.3, using MIC value of 8 µg/ml.
primer pair IF171/IF175. Transformants were selected by PCR
for the presence of the msr(D) gene, as previously described Erythromycin Efflux
(Iannelli and Pozzi, 2004). A total of four transformants The function of mef (A) and msr(D) was studied by
were selected out of 186 tested. All four showed acquisition testing incorporation of radiolabeled erythromycin in the
of erythromycin resistance, with an MIC value of 8 µg/ml. deletion mutants (Figure 3). Radiolabeled erythromycin
A representative transformant was named FP92, checked by DNA was retained/incorporated by strains lacking msr(D), while
sequencing and used as a control in further experiments. msr(D)-carrying strains showed erythromycin efflux. This was
observed both in S. pneumoniae (Figure 3A) and in S. pyogenes
The msr(D) Gene in Streptococcus (Figure 3B). Accumulation of radiolabeled erythromycin was
pyogenes maximum in the 1mef (A)–1msr(D) S. pneumoniae mutant.
The contribution of msr(D) to macrolide resistance was also The deletion of mef (A) did not affect erythromycin efflux:
studied in S. pyogenes, which is the original host of 81207.3 1mef (A) mutant showed an erythromycin accumulation
(Santagati et al., 2003). Two isogenic strains of S. pyogenes comparable to that of the wild type strain, even if the kinetics of
were constructed: (i) FR156, carrying 81207.3, and (ii) FR155, accumulation were different (Figure 3A). Both the S. pneumoniae
carrying 81207.3/1msr(D) (Table 1). 81207.3 transfer from and the S. pyogenes1msr(D) mutants showed an intracellular
S. pneumoniae donors to S. pyogenes recipients occurred at accumulation of erythromycin which peaked already 10 min
frequencies of 10−7 recombinants per donor. FR155 lacking after erythromycin addition (Figures 3A,B). These results
msr(D) was susceptible to erythromycin (MIC of 0.12 µg/ml), were confirmed in a series of control efflux assays which
whereas FR156 was resistant, with an MIC of 8 µg/ml (Table 2). included (i) testing deletion mutants derived a “mef (E)-positive
These data show that in S. pyogenes the presence of the mef (A) strain” carrying mef(A)–msr(D) allelic variants and (ii) testing
gene alone determines a fourfold increase of the MIC for complemented strain FP92 (data not shown). Taken together,

FIGURE 3 | Efflux assay in S. pneumoniae (A) and S. pyogenes (B) isogenic mutant strains. The 1mef(A)–1msr(D) S. pneumoniae mutant showed the maximum
accumulation of radiolabeled erythromycin. Erythromycin efflux was not affected by the deletion of mef(A). S. pneumoniae and S. pyogenes1msr(D) mutants
showed an intracellular accumulation of erythromycin peaking 10 min after erythromycin addition. Genotype is indicated on the right of each graph. Cell-associated
erythromycin is reported as counts per minute (CPM). Arrows indicate the time point at which radiolabeled erythromycin was added. Full circles indicate the wild type
strain carrying mef(A) and msr(D), open circles the mef(A) and msr(D) deletion mutant, open diamonds the msr(D) deletion mutant, and open squares the mef(A)
deletion mutant. In all curves, the CPM baseline value at time 0 was subtracted from the CPM values of each time point.

Frontiers in Microbiology | www.frontiersin.org 6 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

these results suggest that type M resistance to macrolides macrolides by an ATP-dependent efflux mechanism. The msr(D)
in streptococci is due to an efflux transport system of the gene product, Msr(D), is phylogenetically classified in the ABC-F
ABC superfamily, in which mef (A) encodes the transmembrane family of ABC transporters together with other ATP-binding
channel, and msr(D) the two ATP-binding domains. proteins, such as Vga and Lsa, which confer resistance also
to other ribosome targeting antibiotics such as lincosamides,
streptogramins, pleuromutilins, and ketolides. Proteins in this
DISCUSSION family share a general architecture with two NBDs and a long,
mostly alpha helical, linker sequence connecting them. The
In this work, protein sequence analysis showed that Mef(A)
spectrum of antibacterial resistances conferred is variable among
contains 12 transmembrane segments and Msr(D) contains two
members of this family, with some proteins giving resistance to
ATP-binding domains (ABC domains). Analysis of bacterial
multiple classes of antibiotics (Lenart et al., 2015; Sharkey et al.,
genomes showed that mef (A) and msr(D) are found in tandem
2016).
in 33 out of 37 cases. We constructed isogenic deletion
Since deletion of mef (A) did not affect erythromycin efflux
mutants in S. pneumoniae and S. pyogenes to define the
and produced only a twofold reduction on erythromycin
respective contribution of mef (A) and msr(D) to macrolide
MIC, it is possible that in the absence of Mef(A), Msr(D)
resistance. Physiological studies by MIC determinations
uses an alternative transmembrane protein to pump the
and efflux assays, carried out in the original streptococcal
antibiotic out of the cell. A BlastP search in the genomes of
hosts, showed that msr(D) is essential for erythromycin
S. pneumoniae TIGR4 and S. pyogenes M1 revealed that there
resistance and drug efflux, whereas mef (A) deletion produces
are, respectively, three and one hypothetical transmembrane
a twofold reduction of MIC and does not affect efflux.
proteins homologous to Mef(A). Site-specific mutagenesis of the
Thus, it appears that mef (A) and msr(D) encode an ABC
mef (A) homologous genes will be a first step for the identification
transporter involved in macrolide efflux with Mef(A) as the
of alternative Msr(D) cognate transmembrane domains which
transmembrane channel, and Msr(D) as the cytoplasmatic
could complement the Mef(A) function.
ATP-binding protein. ABC transporters are multidomain
membrane proteins minimally composed of two transmembrane
domains and two ATP-binding domains. Transmembrane AUTHOR CONTRIBUTIONS
domains are responsible for binding and transport, while ATP-
binding domains for coupling the energy of ATP hydrolysis to FI and GPo designed the experiments. FI, FS, MS, J-DD, EL, GPa,
conformational changes in the transmembrane domains. These and MC performed the experimental work. FI, FS, MO, GR, SS,
four domains may belong to a single protein or to different and GPo analyzed and interpreted the data. FI, FS, and GPo wrote
proteins. the paper.
In E. coli, the majority of transporters are secondary
transporters and rely on proton-motive force as a source of
energy3 . Streptococci are fermentative organisms that use ATP FUNDING
as primary source of energy; accordingly, the majority of
transporters are ATP-dependent. Because of these metabolic This study was supported by the European Commission grants
differences, it is likely that Mef(A) works as a major facilitator ANTIRESDEV HEALTH-F3-2009-241446 and Italian Ministry
when expressed in E. coli (Clancy et al., 1996), while in the of University and Research, project PRIN 2012 (2012WJSX8K).
original streptococcal host, Mef(A) is coupled to the cognate
ATP-binding protein Msr(D) to function as an efflux system.
In this work, we show that the msr(D) gene (i) is always SUPPLEMENTARY MATERIAL
in tandem with mef (A) (Figure 1), constituting a single
transcriptional unit, and (ii) confers type M resistance to The Supplementary Material for this article can be found
online at: https://www.frontiersin.org/articles/10.3389/fmicb.
3
http://www.membranetransport.org/transportDB2 2018.01670/full#supplementary-material

REFERENCES macrolide resistance in phenotypically diverse clones of group A Streptococcus.


J. Infect. Dis. 188, 1898–1908. doi: 10.1086/379897
Ambrose, K. D., Nisbet, A. D., and Stephens, D. S. (2005). Macrolide efflux in Brenciani, A., Bacciaglia, A., Vignaroli, C., Pugnaloni, A., Varaldo, P. E., and
Streptococcus pneumoniae is mediated by a dual efflux pump (mel and mef) Giovanetti, E. (2010). Fm46.1, the main Streptococcus pyogenes element
and is erythromycin inducible. Antimicrob. Agents Chemother. 49, 4203–4209. carrying mef(A) and tet(O) genes. Antimicrob. Agents Chemother. 54, 221–229.
doi: 10.1128/AAC.49.10.4203-4209.2005 doi: 10.1128/AAC.00499-09
Amezaga, M. R., and McKenzie, H. (2006). Molecular epidemiology of macrolide Brenciani, A., Ojo, K. K., Monachetti, A., Menzo, S., Roberts, M. C., Varaldo,
resistance in beta-haemolytic streptococci of lancefield groups A, B, C and P. E., et al. (2004). Distribution and molecular analysis of mef(A)-containing
G and evidence for a new mef element in group G streptococci that carries elements in tetracycline-susceptible and -resistant Streptococcus pyogenes
allelic variants of mef and msr(D). J. Antimicrob. Chemother. 57, 443–449. clinical isolates with efflux-mediated erythromycin resistance. J. Antimicrob.
doi: 10.1093/jac/dki490 Chemother. 54, 991–998. doi: 10.1093/jac/dkh481
Banks, D. J., Porcella, S. F., Barbian, K. D., Martin, J. M., and Musser, J. M. (2003). Chancey, S. T., Bai, X., Kumar, N., Drabek, E. F., Daugherty, S. C., Colon, T.,
Structure and distribution of an unusual chimeric genetic element encoding et al. (2015). Transcriptional attenuation controls macrolide inducible efflux

Frontiers in Microbiology | www.frontiersin.org 7 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

and resistance in Streptococcus pneumoniae and in other gram-positive bacteria Klaassen, C. H., and Mouton, J. W. (2005). Molecular detection of the macrolide
containing mef/mel(msr(D)) elements. PLoS One 10:e0116254. doi: 10.1371/ efflux gene: to discriminate or not to discriminate between mef(A) and mef(E).
journal.pone.0116254 Antimicrob. Agents Chemother. 49, 1271–1278. doi: 10.1128/AAC.49.4.1271-
Clancy, J., Petitpas, J., Dib-Hajj, F., Yuan, W., Cronan, M., and Kamath, A. V., et al. 1278.2005
(1996). Molecular cloning and fuctional analysis of a novel macrolide-resistance Lanie, J. A., Ng, W. L., Kazmierczak, K. M., Andrzejewski, T. M., Davidsen, T. M.,
determinant, mefA, from Streptococcus pyogenes. Mol. Microbiol. 22, 867–879. Wayne, K. J., et al. (2007). Genome sequence of avery’s virulent serotype 2 strain
doi: 10.1046/j.1365-2958.1996.01521.x D39 of Streptococcus pneumoniae and comparison with that of unencapsulated
Claverys, J. P., Dintilhac, A., Pestova, E. V., Martin, B., and Morrison, D. A. laboratory strain R6. J. Bacteriol. 189, 38–51. doi: 10.1128/JB.01148-06
(1995). Construction and evaluation of new drug-resistance cassettes Leclercq, R., and Courvalin, P. (1991). Bacterial resistance to macrolides,
for gene disruption mutagenesis in Streptococcus pneumoniae, using lincosamide, and streptogramin antibiotics by target modification. Antimicrob.
an ami test platform. Gene 164, 123–128. doi: 10.1016/0378-1119(95) Agents Chemother. 35, 1267–1272. doi: 10.1128/AAC.35.7.1267
00485-O Lenart, J., Vimberg, V., Vesela, L., Janata, J., and Balikova Novotna, G. (2015).
Clinical and Laboratory Standards Institute [CLSI] (2017). Performance Standards Detailed mutational analysis of vga(A) interdomain linker: implication for
for Antimicrobial Susceptibility Testing, 27th Edn, Wayne, PA: CLSI supplement antibiotic resistance specificity and mechanism. Antimicrob. Agents Chemother.
Clinical and Laboratory Standards Institute. 59, 1360–1364. doi: 10.1128/AAC.04468-14
Daly, M. M., Doktor, S., Flamm, R., and Shortridge, D. (2004). Characterization Martin, B., Prudhomme, M., Alloing, G., Granadel, C., and Claverys, J. P. (2000).
and prevalence of mefA, mefE, and the associated mrs(D) gene in Streptococcus Cross-regulation of competence pheromone production and export in the early
pneumoniae clinical isolates. J. Clin. Microbiol. 42, 3570–3574. doi: 10.1128/ control of transformation in Streptococcus pneumoniae. Mol. Microbiol. 38,
JCM.42.8.3570-3574.2004 867–878. doi: 10.1046/j.1365-2958.2000.02187.x
Del Grosso, M., Camilli, R., Iannelli, F., Pozzi, G., and Pantosti, A. (2006). Pearce, B. J., Iannelli, F., and Pozzi, G. (2002). Construction of new unencapsulated
The mef(E)-carrying genetic element (mega) of Streptococcus pneumoniae: (rough) strains of Streptococcus pneumoniae. Res. Microbiol. 153, 243–247.
insertion sites and association with other genetic elements. Antimicrob. Agents doi: 10.1016/S0923-2508(02)01312-8
Chemother. 50, 3361–3366. doi: 10.1128/AAC.00277-06 Pozzi, G., Iannelli, F., Oggioni, M. R., Santagati, M., and Stefani, S. (2004). Genetic
Del Grosso, M., Iannelli, F., Messina, C., Santagati, M., Petrosillo, N., and Stefani, S. elements carrying macrolide efflux genes in streptococci. Curr. Drug Targets
et al. (2002). Macrolide efflux genes mef(A) and mef(E) are carried by different Infect. Disord. 4, 203–206. doi: 10.2174/1568005043340641
genetic elements in Streptococcus pneumoniae. J. Clin. Microbiol. 50, 1230–1240. Reinert, R. R., Ringelstein, A., van der Linden, M., Cil, M. Y., Al-Lahham, A.,
doi: 10.1128/JCM.40.3.774-778.2002 and Schmitz, F. J. (2006). Molecular epidemiology of macrolide-resistant
Del Grosso, M., Scotto d’Abusco, A., Iannelli, F., Pozzi, G., and Pantosti, A. (2004). Streptococcus pneumoniae isolates in Europe. J. Clin. Microbiol. 43, 1294–1300.
Tn2009, a Tn916-like element containing mef(E) in Streptococcus pneumoniae. doi: 10.1128/JCM.43.3.1294-1300.2005
Antimicrob. Agents Chemother. 48, 2037–2042. doi: 10.1128/AAC.48.6.2037- Roberts, M. C., Sutcliffe, J., Courvalin, P., Jensen, L. B., Rood, J., and
2042.2004 Seppala, H. (1999). Nomenclature for macrolide and macrolide -lincosamde-
Gay, K., and Stephens, D. S. (2001). Structure and dissemination of a chromosomal streptogramine B resistance determinants. Antimicrob. Agents Chemother. 43,
insertion element encoding macrolide efflux in Streptococcus pneumoniae. 2823–2830.
J. Infect. Dis. 184, 56–65. doi: 10.1086/321001 Roberts, M. C. (2008). Update on macrolide-lincosamide-streptogramin, ketolide,
Green, M. D., Beall, B., Marcon, M. J., Allen, C. H., Bradley, J. S., Dashefsky, B., et al. and oxazolidinone resistance genes. FEMS Microbiol. Lett. 282, 147–159.
(2006). Multicentre surveillance of the prevalence and molecular epidemiology doi: 10.1111/j.1574-6968.2008.01145.x
of macrolide resistance among pharyngeal isolates of group A streptococci Rudolph, K., Bulkow, L., Bruce, M., Zulz, T., Reasonover, A., and Harker-Jones, M.,
in the USA. J. Antimicrob. Chemother. 57, 1240–1243. doi: 10.1093/jac/ et al. (2013). Molecular resistance mechanisms of macrolide-resistant invasive
dkl101 Streptococcus pneumoniae isolates from Alaska, 1986 to 2010. Antimicrob.
Hoskins, J., Alborn, W. E., Arnold, J., Blaszczak, L. C., Burgett, S., Dehoff, Agents Chemother. 57, 5415–5422. doi: 10.1128/AAC.00319-13
B. S., et al. (2001). Genome of the bacterium Streptococcus pneumoniae Salles, C., Creancier, L., Claverys, J. P., and Mejean, V. (1992). The high level
strain R6. J. Bacteriol. 183, 5709–5717. doi: 10.1128/JB.183.19.5709-5717. streptomycin resistance gene from Streptococcus pneumoniae is a homologue of
2001 the ribosomal protein S12 gene from Escherichia coli. Nucleic Acids Res. 20:6103.
Iannelli, F., Pearce, B. J., and Pozzi, G. (1999). The type 2 capsule locus of doi: 10.1093/nar/20.22.6103
Streptococcus pneumoniae. J. Bacteriol. 81, 2652–2654. Santagati, M., Iannelli, F., Cascone, C., Campanile, F., Oggioni, M. R., Stefani, S.,
Iannelli, F., Santagati, M., Docquier, J. D., Cassone, M., Oggioni, M. R., Rossolini, et al. (2003). The novel conjugative transposon Tn1207.3 carries the macrolide
G. M., et al. (2004). “Type M resistance to macrolides in streptococci is not due efflux gene mef(A) in Streptococcus pyogenes. Microb. Drug Resist. 9, 243–247.
to the mef(A) Gene, but to mat(A) encoding an ATP-dependent efflux pump,” in doi: 10.1089/107662903322286445
Proceedings of the Forty fourth Interscience Conference on Antimicrobial Agents Santagati, M., Iannelli, F., Oggioni, M. R., Stefani, S., and Pozzi, G. (2000).
and Chemoterapy, Washington, DC. Characterization of a genetic element carrying the macrolide efflux gene mef(A)
Iannelli, F., and Pozzi, G. (2004). Method for introducing specific and unmarked in Streptococcus pneumoniae. Antimicrob. Agents Chemother. 44, 2585–2587.
mutations into the chromosome of Streptococcus pneumoniae. Mol. Biotechnol. doi: 10.1128/AAC.44.9.2585-2587.2000
26, 81–86. doi: 10.1385/MB:26:1:81 Santagati, M., Lupo, A., Scillato, M., Di Martino, A., and Stefani, S. (2009). Conjugal
Iannelli, F., and Pozzi, G. (2007). “Protocol for conjugal transfer of genetic elements mobilization of the mega element carrying mef(E) from Streptococcus salivarius
in Streptococcus pneumoniae,” in Molecular Biology of Streptococci, eds R. to Streptococcus pneumoniae. FEMS Microbiol. Lett. 290, 79–84. doi: 10.1111/j.
Hakenbeck and G. S. Chhatwal (Norfolk: Horizon Scientific Press), 525–529. 1574-6968.2008.01408.x
Iannelli, F., Santagati, M., Santoro, F., Oggioni, M. R., Stefani, S., and Pozzi, G. Santoro, F., Oggioni, M. R., Pozzi, G., and Iannelli, F. (2010). Nucleotide sequence
(2014a). Nucleotide sequence of conjugative prophage Phi1207.3 (formerly and functional analysis of the tet(M)-carrying conjugative transposon Tn5251
Tn1207.3) carrying the mef(A)/msr(D) genes for efflux resistance to macrolides of Streptococcus pneumoniae. FEMS Microbiol. Lett. 308, 150–158. doi: 10.1111/
in Streptococcus pyogenes. Front. Microbiol. 5:687. doi: 10.3389/fmicb.2014. j.1574-6968.2010.02002.x
00687 Scott, J. R., and Fischetti, V. A. (1983). Expression of Streptococcal M protein in
Iannelli, F., Santoro, F., Oggioni, M. R., and Pozzi, G. (2014b). Nucleotide Escherichia coli. Science 221, 758–760. doi: 10.1126/science.6192499
sequence analysis of integrative conjugative element Tn5253 of Streptococcus Seppala, H., Skurnik, M., Soini, H., Roberts, M. C., and Huovinen, P. (1998).
pneumoniae. Antimicrob. Agents Chemother. 58, 1235–1239. doi: 10.1128/AAC. A novel erythromycin resistance methylase gene (ermTR) in Streptococcus
01764-13 pyogenes. Antimicrob. Agents Chemother. 42, 257–262.
Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N., and Sternberg, M. J. (2015). The Sharkey, L. K., Edwards, T. A., and O’Neill, A. J. (2016). ABC-F Proteins
phyre2 web portal for protein modeling, prediction and analysis. Nat. Protoc. mediate antibiotic resistance through ribosomal protection. mBio 7:e01975.
10, 845–858. doi: 10.1038/nprot.2015.053 doi: 10.1128/mBio.01975-15

Frontiers in Microbiology | www.frontiersin.org 8 July 2018 | Volume 9 | Article 1670


Iannelli et al. ABC-Cassette Responsible for Macrolide Efflux

Smith, M. D., and Guild, W. R. (1979). A plasmid in Streptococcus pneumoniae. Weisblum, B. (1995). Erythromycin resistance by ribosome modification.
J. Bacteriol. 137, 735–739. Antimicrob. Agents Chemother. 39, 577–585. doi: 10.1128/AAC.39.3.577
Sutcliffe, J., Tait-Kamradt, A., and Wondrack, L. (1996). Streptococcus pneumoniae Zhang, Y., Tatsuno, I., Okada, R., Hata, N., Matsumoto, M., Isaka, M., et al.
and Streptococcus pyogenes resistant to macrolides but sensitive to clindamycin: (2016). Predominant role of msr(D) over mef(A) in macrolide resistance
a common resistance pattern mediated by an efflux system. Antimicrob. Agents in Streptococcus pyogenes. Microbiology 162, 46–52. doi: 10.1099/mic.0.
Chemother. 40, 1817–1824. 000206
Tait-Kamradt, A., Clancy, J., Cronan, M., Dib-Hajj, F., Wondrack, L., Yuan, W.,
et al. (1997). mefE is necessary for erythromycin-resistant M phenotype in Conflict of Interest Statement: The authors declare that the research was
Streptococcus pneumoniae. Antimicrob. Agents Chemother. 41, 2251–2255. conducted in the absence of any commercial or financial relationships that could
Tatsuno, I., Isaka, M., Masuno, K., Hata, N., Matsumoto, M., and Hasegawa, T. be construed as a potential conflict of interest.
(2018). Functional predominance of msr(D), which is more effective as mef(A)-
associated than mef(E)-associated, over mef(A)/mef(E) in macrolide resistance Copyright © 2018 Iannelli, Santoro, Santagati, Docquier, Lazzeri, Pastore, Cassone,
in Streptococcus pyogenes. Microb. Drug Resist. doi: 10.1089/mdr.2017.0277 Oggioni, Rossolini, Stefani and Pozzi. This is an open-access article distributed
[Epub ahead of print]. under the terms of the Creative Commons Attribution License (CC BY). The use,
Vitali, L. A., Di Luca, M. C., Prenna, M., and Petrelli, D. (2016). Correlation distribution or reproduction in other forums is permitted, provided the original
between genetic features of the mef(A)-msr(D) locus and erythromycin author(s) and the copyright owner(s) are credited and that the original publication
resistance in Streptococcus pyogenes. Diagn. Microbiol. Infect. Dis. 84, 57–62. in this journal is cited, in accordance with accepted academic practice. No use,
doi: 10.1016/j.diagmicrobio.2015.08.007 distribution or reproduction is permitted which does not comply with these terms.

Frontiers in Microbiology | www.frontiersin.org 9 July 2018 | Volume 9 | Article 1670

You might also like