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Curr Gastroenterol Rep (2016) 18:30

DOI 10.1007/s11894-016-0510-4

GI ONCOLOGY (R BRESALIER, SECTION EDITOR)

Multi-Target Stool DNA Test: Is the Future Here?


Seth Sweetser 1 & David A. Ahlquist 1

# Springer Science+Business Media New York 2016

Abstract Colorectal cancer (CRC) screening reduces CRC Despite progress with screening efforts over more than three
incidence and mortality and is widely recommended. decades, CRC remains the no. 2 cancer killer in the USA [2].
However, despite these demonstrated benefits, a large percent- Evidence shows that screening reduces disease-specific mor-
age of the population remains unscreened. The multi-target bidity and mortality [3] and is cost-effective [4].
stool DNA (MT-sDNA) test is a new, non-invasive option Although CRC screening is widely available, specific
for CRC screening that has a high accuracy rate in detection screening programs vary across countries. In the USA,
of colorectal neoplasia and offers great opportunity to enhance longstanding guidelines have endorsed a panel of options [5]
screening uptake. This review provides the current state of the including fecal immunochemical testing, flexible sigmoidos-
art knowledge about the use of MT-sDNA in CRC screening. copy, and colonoscopy, with colonoscopy being the dominant
screening modality [6]. However, these conventional screen-
Keywords Colorectal cancer . Screening . Stool DNA ing approaches are hampered by a number of factors. First, the
accuracy of these modalities is less than optimal. Although
colonoscopy is highly accurate when it is performed well,
Abbreviations colonoscopy quality is variable and operator-dependent.
CMS Center for Medicare and Medicaid Services Second, despite the supporting evidence, recommendations,
CRC Colorectal cancer and availability of several screening tests, a substantial portion
FDA Food and Drug Administration of the US population is not current with screening [6]. There
MT-sDNA Multi-target stool DNA are various reasons for underutilization of all the CRC screen-
SSP Sessile serrated polyp ing modalities, but patients often do not want to undergo co-
lonoscopy in particular due to fear of pain, discomfort, embar-
rassment, concern of safety, or inability to take uncompensat-
Introduction ed time off from work to undergo the procedure [7]. Finally,
the recommended colonoscopic screening frequency of every
Colorectal cancer (CRC) is the third most common cancer and 10 years may result in missed, aggressive interval lesions,
fourth leading cause of cancer-related deaths in the world [1]. particularly in the proximal colon. Indeed, recent large cohort
studies reveal that screening colonoscopy is associated with a
substantially lower benefit in terms of reduced incidence and
mortality with proximal CRC [8, 9••]. Hence, there is substan-
This article is part of the Topical Collection on GI Oncology tial opportunity to improve the effectiveness of CRC screen-
ing in several ways.
* Seth Sweetser The multi-target stool DNA (MT-sDNA) test is a new, non-
sweetser.seth@mayo.edu invasive option for CRC screening that has a high accuracy
rate in detection of colorectal neoplasia, is user friendly, which
1
Division of Gastroenterology and Hepatology, Mayo Clinic College should enhance patient adherence, and is able to be distributed
of Medicine, 200 First Street SW, Rochester, MN 55905, USA via mail with improvement in screening access.
30 Page 2 of 7 Curr Gastroenterol Rep (2016) 18:30

Molecular Pathogenesis of Colorectal Cancer increased proliferation, reduced cell-cell or cell-basement


membrane adhesion, and other factors. In addition, the epithe-
CRC is one of the most preventable cancers because it almost lial mass of a colorectal neoplasm turns over at a high rate [14]
always arises from polyps, either tubular adenomas or serrated and may replace itself every 3 days and exfoliate a substantial
polyps, which typically evolve into CRC over many years. discharge of dysplastic cells in the process. Furthermore, the
This slow polyp-cancer progression sequence offers an oppor- release of tumor-specific DNA markers into stool by the
tunity to detect and remove the polyps before they undergo mechanism of exfoliation is a continuous process unlike blood
malignant transformation. The polyp to CRC sequence is het- loss from neoplasms which is intermittent and often absent
erogeneous and involves multiple different molecular path- with precancers and early-stage CRC [15]. The mechanistic
ways. The heterogeneity of colon polyps and CRC can be differences in marker release allow for single stool sampling
appreciated on the basis of global DNA abnormalities (e.g., and high neoplasm detection rates with stool DNA testing.
microsatellite instability), epigenetic alterations (e.g., CpG is- The amount of exfoliated tumor DNA is proportional to the
land methylator phenotype (aka CIMP)), and specific gene surface area of the neoplasms. Conceptually, it seems unlikely
mutations. Normal epithelium transforms into invasive adeno- that a single stool DNA test could reliably detect small polyps;
carcinoma through the random accumulation of acquired ge- however, the microscopic surface area of a polyp is markedly
netic and epigenetic changes. Because of the marked variation larger than its grossly observed surface area due to extensive
in the pattern and extent of these acquired molecular changes, infolding of the surface epithelium. This extensive epithelial
there has been no single, universal genetic marker of cancer or infolding provides an actual epithelial surface area greater
precancerous lesions. However, aberrant DNA methylation is than 200 times that predicted by simple gross dimensions
a molecular alteration that occurs during the early stages of [16]. The disproportionate exfoliation rates and large surface
tumorigenesis with greater frequency and predictably than area of colorectal neoplasms explain why tumor-derived DNA
gene mutations [10]. Several specific genes are methylated can account for more than 20 % of human DNA in stools from
in the majority of cancers and precancerous lesions [11]. patients with CRC [17].
Therefore, aberrantly methylated genes are particularly infor- Dysplastic cells have a survival advantage over normal
mative molecular markers for colorectal neoplasia. However, colonic cells following exfoliation. However, intraluminal ly-
given the variation in both genetic and epigenetic marker cov- sis of dysplastic cells occurs and the recovery of DNA con-
erage observed to date [12], a marker panel consisting of stituents released by lysis during fecal transit accounts for the
complementary genetic and epigenetic targets has, to date, rational to test for tumor-specific cell constituents rather than
been necessary to achieve highest detection of CRC and intact colonocytes to achieve the highest neoplasm detection
precancerous lesions. rates.

Stool-Based DNA Testing: Biological Considerations The Multi-Target Stool DNA Test

There is a strong rationale to measure mutated DNA in stool. The multi-target stool DNA (MT-sDNA) test is an automated
The detection of molecular markers in stool from colorectal test that is now available commercially in the USA
neoplasms is naturally facilitated by a series of biological (Cologuard™, Exact Sciences, Madison, WI). The multi-
events including the disproportionately copious and continu- target sDNA panel consists of KRAS point mutations, aber-
ous exfoliation of dysplastic cells and their constituents into rantly methylated genes (BMP3 and NDRG4), β-actin as a
stool, the large functional surface area of neoplasms, relative control indicator of DNA quantity, and a human hemoglobin
stability of dysplastic cells, and signature tumor-associated immunochemical assay. The quantitative measurements of
DNA changes. each marker are then incorporated into a logistic regression
Tumor cells and their constituents are released into stool by equation, with a value of 183 or more indicative of a positive
exfoliation from the surface of precancerous lesions and early- test.
stage cancers. Based on direct histological observations, ex- Case control studies with prototype and optimized MT-
foliation from colorectal neoplasms appears to be a continuous sDNA demonstrated high discrimination for early-stage
process that occurs more frequently than exfoliation from nor- CRC and precancerous polyps at greatest risk of progression
mal epithelium [13]. In the normal colon, epithelial renewal [18, 19]. Of critical importance, the MT-sDNA detection rates
does not necessarily lead to exfoliation but, instead, often for CRC and advanced precancers were not affected by neo-
involves engulfment of degenerating colonocytes by plasm site in these case-control studies; in contrast to the bias
subepithelial phagocytes [13]. In contrast, neoplasms exfoliate toward distal lesion detection noted with conventional ap-
or shed dysplastic cells into the lumen. The proportionately proaches, MT-sDNA was equally sensitive for proximal and
greater exfoliation from neoplasms may be related to distal neoplasms.
Curr Gastroenterol Rep (2016) 18:30 Page 3 of 7 30

In a pivotal validation study from the screening setting beyond 1 cm. This test feature has important implications on
[20••], MT-sDNA was prospectively compared to fecal immu- precursor lesion detection by MT-sDNA testing in a screening
nochemical test (FIT) in 9899 asymptomatic average-risk in- program (see below), as continued growth in adenoma size
dividuals aged 50–84 years. Colonoscopy served as the refer- >1 cm is strongly associated with progressive risk of CRC
ence standard. The demographic mix of the study patients was transformation [25]. Serrated polyps, the other critical precur-
representative of the general US population. CRC sensitivity sor lesions, are detected at a much higher rate by MT-sDNA
was 92 % for MT-sDNA and 73 % for FIT, with respective compared to FIT [26] as shown in Fig. 2.
specificities of 87 and 95 % (when non-advanced polyps are
included in denominator). Sensitivity for advanced, precan-
cerous polyps was 42 % for MT-sDNA and 24 % for FIT. Multi-Target Stool DNA in Clinical Practice
MT-sDNA was superior to FIT for detection of lesions with
high-grade dysplasia (69 vs 46 %, respectively) and for sessile The US Food and Drug Administration (FDA) approved the
serrated polyps 1 cm or greater (42 vs 5 %, respectively). MT-sDNA test for use in general CRC screening in August of
Importantly, the sensitivity of MT-sDNA for detection of 2014. Concurrently, the Center for Medicare and Medicaid
high-risk adenomas and sessile serrated polyps increased in Services (CMS) ruled that the test would be covered by
proportion to lesion size. When MT-sDNA was normalized to Medicare at a frequency of every 3 years. Several professional
the age distribution of the general population (the multicenter organizations, including the American Cancer Society [27],
study was skewed toward older ages to increase disease prev- now include stool DNA testing in their CRC screening guide-
alence), the adjusted specificity was 92.5 % in those with lines. A modeling study, examining the cost-effectiveness of
normal colonoscopy (unpublished data). Using data from this MT-sDNA in the context of population screening, found that a
large, cross-sectional study, the numbers of persons who need 3-year MT-sDNA test interval provides a decrease in CRC
to be screened to detect one CRC were 154 for colonoscopy, incidence and mortality that is only slightly lower than that
166 for MT-sDNA, and 208 for FIT. of colonoscopy every 10 years but with similar and acceptable
In a smaller but similarly designed study [21•], MT-sDNA cost-effectiveness [28].
was evaluated in Alaska native people, who have one of the With the advent of this new disruptive technology for
world’s highest rates of colorectal neoplasia. The MT-sDNA average-risk CRC, questions must be raised regarding its per-
detection rates were remarkably similar to those from the larg- formance characteristics, place in clinical practice, and appro-
er North American study (Fig. 1). There was a higher CRC priate follow-up of test results. We have addressed several key
specificity for MT-sDNA in this study of 93 % based on pa- questions in the following paragraphs, and some of the text
tients with normal colonoscopy which may be related to the has been excerpted from our recent clinical review [29].
greater percentage of younger patients in the Alaska study.
Prevention of CRC is the ultimate goal of screening. To Is the Sensitivity of Multi-Target Stool DNA Sufficiently
accomplish this, a screening test must effectively detect those High for Screen Detection of Colorectal Cancer
precursor lesions most likely to progress. The non-invasive and Advanced Precancer?
approach of fecal occult blood testing to screen for CRC has
poor sensitivity for colorectal precursor lesions [22–24]. To have an impact on CRC mortality, a screening test must
However, the detection rates of colorectal neoplasia by MT- have a high rate of detection of early-stage CRC at a single
sDNA progressively increase with growth in adenoma size point in time (point sensitivity). Since there is a variable rate of
stage progression to cancer, one cannot rely on cumulative
detection with repeated testing over time (program sensitivity)

Fig. 1 Screen detection of advanced colorectal neoplasia by multi-target


stool DNA test in the representative US population study [20••] and the Fig. 2 Sensitivity of multi-target stool DNA versus fecal immunochemical
Alaska native population study [21•]. Adapted from [29] test by SSP size. Adapted from [29]
30 Page 4 of 7 Curr Gastroenterol Rep (2016) 18:30

to detect missed CRC. MT-sDNA meets this criterion standard Table 1 Elements for effective detection by MT-sDNA and factor
influences
with a high point sensitivity of 94 % for asymptomatic stage I–
II CRC [20••] which is comparable to colonoscopy [30•] and Elements for effective detection by MT-sDNA Factor influences
higher than the point sensitivity of 70 % for FIT [20••].
An ideal screening test for CRC prevention would accu- High sensitivity for CRC and greatest-risk precancer Sensitivity
rately detect the precancerous polyps most likely to progress Less affected by tumor site Sensitivity
to cancer, as the large majority of polyps do not evolve into Operator independent (automated) Sensitivity
CRC. The precancerous polyps that are most likely to progress Non-invasive Compliance
include advanced adenomas and sessile serrated polyps >1 cm No bowel preparation Compliance
[31]. However, the degree of CRC risk applicable to these No diet or medication restriction Compliance
lesion subgroups remains controversial [32]. Using radiologic Off-site collection Access
data from the precolonoscopic era [33], many colorectal Widely accessible Access
polyps ≥1 cm at baseline appear to remain stable or regress
over time, but 2.5 % develop cancer at the index polyp site
after 5 years, 8 % after 10 years, and >20 % after 20 years.
High-grade dysplasia represents the most advanced precancer- concern over the specificity of MT-sDNA. However, most
ous lesion and the critical link between benign and malignant important in a screening application is the cumulative false-
disease [34, 35]. Furthermore, the large majority of high-grade positive rate over time, which is influenced by both point
dysplasia occurs in polyps >2 cm in diameter [19, 36]. It is specificity and testing frequency. Because of its high sensitiv-
therefore logical that from a prevention standpoint, it is most ity for CRC, MT-sDNA will be performed initially every
important to detect polyps with high-grade dysplasia and large 3 years. Using the lower point specificity of 87 % for MT-
polyps at greatest risk of containing high-grade dysplasia. sDNA, compared to 95 % for FIT, the performance of MT-
In contrast to CRC, there is a long dwell time of precancer- sDNA within a screening program will be favorable. For ex-
ous lesions [33] that permits detection of high-risk polyp co- ample, MT-sDNA done every 3 years yields roughly 4 % false
horts by repeat testing. As such, cumulative sensitivity with positives/year (13 % divided by 3) compared to 5 % false
repeated testing over time (program sensitivity) is most rele- positives/year by annual FIT.
vant. Based on point sensitivities from the screen setting [20••], The point specificity of MT-sDNA is likely higher than the
MT-sDNA is estimated to achieve high program sensitivities reported 87 % [20••] for several reasons. First, in the large
for those polyps at greatest risk of progression. For example, seminal study [20••], non-advanced polyps were considered
cumulative sensitivity for HGD is estimated to increase to false-positives; in this Bfalse-positive^ group as defined in the
93 % by the second screen, and for a cohort of 1–2-cm ade- study, 40 % had non-advanced adenomas, 23 % had hyper-
nomas, it is estimated to rise to 88–98 % by the third screening plastic or non-neoplastic polyps, and 37 % had no biopsies
round. Thus, the program sensitivity of MT-sDNA performed taken. Therefore, it is likely that the 40 % with non-advanced
at a frequency of every 3 years may compare favorably to adenomas would have a change in surveillance recommenda-
colonoscopy done every 10 years. tions and would not be treated in practice as false positives.
It is important to note that high test sensitivity is not the Second, at least 10 % of advanced neoplasms are missed by
single feature responsible for effective lesion detection in colonoscopy and would have been considered MT-sDNA
population-level screening. Rather, effective detection is the false positives. Lastly, unlike the blinded study [20••],
product of sensitivity, compliance, and access. All three fac- endoscopists in practice will be aware of the MT-sDNA-
tors must be high to achieve effective screen detection in the positive results prior to their diagnostic examination, which
population. In this regard, MT-sDNA can potentially achieve may improve yield and reduce the likelihood of overlooked
high effective detection rates by positively affecting each of lesions. A preliminary study (unpublished) demonstrated that
these three factors (Table 1). In addition to high test sensitivity, an endoscopists’ knowledge of a positive MT-sDNA en-
MT-sDNA may improve CRC screening uptake due to its hanced colonoscopy performance as measured by longer
user-friendly features and high accessibility by mail withdrawal time and significant increases in the number of
distribution. detected serrated and adenomatous polyps.
Many factors that may influence DNA marker levels in
Is the Specificity of Multi-Target Stool DNA Acceptable stool have been studied [37]. Increasing age is the only factor
for Population Screening? that significantly influences DNA marker levels in stool [20••,
38], which may be due to an increasing polyp burden or ac-
High specificity is a desirable feature of a screening test in cumulated background field changes with age over 65 years.
order to minimize false-positive results that trigger costly Other variables including sex, race, smoking, alcohol, medi-
and unnecessary diagnostic procedures. Some have expressed cations, body mass, or diabetes mellitus do not affect the test
Curr Gastroenterol Rep (2016) 18:30 Page 5 of 7 30

specificity. These findings are of critical importance to CRC particularly for right-sided lesions [22, 23]. Importantly, fecal
screening compliance, as patients using MT-sDNA do not blood tests do not detect sessile serrated polyps [20••, 45],
need to make lifestyle or medication adjustments. lesions that are also often missed by colonoscopy and may
In summary, while the point specificity of MT-sDNA is less help to explain its lesser effect of colonoscopy on proximal
than that of FIT, the program specificity of MT-sDNA may be disease [46]. For these reasons, interval testing with MT-
equal to or better than that of FIT when screening with MT- sDNA may be more logical and effective.
sDNA at every 3-year intervals. MT-sDNA should generate Suboptimal bowel preparation occurs in up to 25 % of
fewer unnecessary colonoscopies over time than with FIT colonoscopies, resulting in substantial miss rates of advanced
done annually when comparing their program specificities. neoplasia [47], and the rates of complete colonoscopy to the
Longitudinal studies are needed to determine the clinical sig- cecum are variable across endoscopists and practice groups
nificance of MT-sDNA-positive results in those with negative [31, 48]. For individuals with a poor preparation or incomplete
colonoscopy findings. colonoscopy, MT-sDNA testing may be a reasonable follow-
up alternative to repeat colonoscopy or other imaging
methods, particularly among individuals who refuse to under-
Indications for Multi-Target Stool DNA go repeat bowel preparation and invasive testing.
Some groups undergoing surveillance colonoscopy are not
MT-sDNA is FDA approved for general screening of those at at particularly increased risk of future colorectal neoplasia.
average risk for CRC. MT-sDNA has a higher sensitivity for The risk of metachronous colorectal neoplasia is relatively
larger precancerous polyps over fecal blood testing ap- low following removal of a single small adenoma, and CRC
proaches, and it achieves high point sensitivity for CRC, sim- risk may not be higher than average among those with a pos-
ilar to that of colonoscopy. MT-sDNA has potential to im- itive family history of sporadic CRC following a negative
prove effectiveness of CRC screening through impacts of its initial surveillance colonoscopy [31]. In these scenarios and
high accuracy for neoplasm detection, user-friendly features in those refusing colonoscopy, surveillance for colorectal neo-
on patient compliance, and easy mail-out distribution on test plasia by MT-sDNA is rational and should be evaluated.
access.

Clinical Follow-Up of Multi-Target Stool DNA Test


Potential Evolving Indications of Multi-Target Stool Results
DNA
The MT-sDNA test is reported as either negative or positive. If
While the initial approval of MT-sDNA is for average-risk the MT-sDNA is negative, then the risk of harboring advanced
screening of CRC in general population, other indications colorectal neoplasia is extremely low and MT-sDNA should
may evolve including interval testing between screening co- be repeated in 3 years with the recognition that the test is most
lonoscopy, follow-up of an inadequately prepared or incom- effective in the programmatic setting. A positive MT-sDNA
plete colonoscopy, and surveillance in low CRC populations. test result should be followed by a diagnostic colonoscopy
In the common scenarios below, use of MT-sDNA may rep- with colorectal neoplasia treated as clinically indicated. An
resent a rational complement or a resource-saving approach. area of heightened concern is the MT-sDNA test-positive pa-
Screening colonoscopy is less effective at reducing the in- tient with normal colonoscopy findings. In instances of such
cidence and mortality from right-sided CRC [9••, 38] with discordance, it is imperative to ensure that the colonoscopy
interval cancers being disproportionately right-sided [30•, was complete to the cecum and the bowel preparation was of
39]. In addition, colonoscopy is operator-dependent with wide high quality. If there is doubt regarding the completeness or
variability in adenoma and sessile serrated polyp detection quality of the bowel preparation, then colonoscopy should be
between endoscopists [40, 41]. Furthermore, the effectiveness repeated. The available data have not permitted the establish-
of colonoscopy in CRC prevention is dependent upon the skill ment of an evidence-based algorithm to direct management of
of the endoscopist [42••, 43]. Finally, while the point sensitiv- the test-positive patient with a high-quality normal colonosco-
ity of colonoscopy for CRC is very high, the long interval of py. The current assessment is based on expert opinion, but
every 10 years as conventionally practiced may not accom- lessons learned from conventional algorithms will help direct
modate for the variable progression rates of neoplastic polyps future evaluations. Patients with a positive MT-sDNA result
to CRC and may miss more aggressive lesions. Some have go onto diagnostic colonoscopy, while those with a negative
recommended the use of fecal blood testing for interval test result have the option of continuing with MT-sDNA
screening between colonoscopies to compensate for program screening every 3 years. In instances where the initial MT-
deficiencies of colonoscopy [44], but fecal blood tests have sDNA result is positive but high-quality colonoscopy (i.e.,
suboptimal sensitivity for both CRC and adenomas, meticulous examination of cecum to rectum with good-to-
30 Page 6 of 7 Curr Gastroenterol Rep (2016) 18:30

excellent bowel preparation) is negative, a repeat MT-sDNA applications of stool DNA testing might include its use as an
test is suggested. If the repeat MT-sDNA test is negative, then interval test between screening colonoscopy and for surveil-
this may indicate that the initial positive result could have lance of populations, at low risk for CRC, or for higher-risk
been due to a technical error or short-lived bleeding and that persons refusing to undergo invasive testing.
the likelihood of missed advanced colorectal neoplasia is low;
in such cases, patients would have the option to return to every Compliance with Ethics Guidelines
3-year screening with MT-sDNA. If the repeat MT-sDNA
Conflict of Interest SS and DAA’s employer, Mayo Clinic, has li-
remains positive, a high-quality colonoscopy should be re- censed technology to Exact Sciences that was used in the development
peated to assess for an overlooked colorectal lesion. If either of Cologuard. As an inventor on this licensed technology, DAA shares in
the first or second colonoscopy reveals a colorectal neoplasm royalties from Exact Sciences to Mayo Clinic. DAA is also a scientific
advisor and research collaborator with Exact Sciences.
or a bleeding lesion (as the MT-sDNA also has a fecal immu-
nochemical test component within its panel), the patient is Human and Animal Rights and Informed Consent All reported
treated accordingly and may subsequently be routed to a sur- studies/experiments with human or animal subjects performed by the
veillance arm. However, should the second colonoscopy also authors have been previously published and were in compliance with
all applicable ethical standards (including the Helsinki declaration and
be normal, it is not clear if further diagnostic evaluation is
its amendments, institutional/national research committee standards, and
needed, because the risk of upper aerodigestive neoplasia is international/national/institutional guidelines).
likely very low. MT-sDNA has been configured and opti-
mized for detection of colorectal neoplasia. In preclinical stud-
ies with earlier-generation stool DNA tests, upper endoscopy
and CT scanning performed on 60 consecutive patients with a
positive stool DNA test and negative colonoscopy revealed no References
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