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DXAKiet THESIS Final Version
DXAKiet THESIS Final Version
INTERNATIONAL UNIVERSITY
A thesis submitted to
B.S in 2019-2020
9/2020
ACKNOWLEDGEMENT
I would like to express my very great appreciation to Assoc. Prof. Dr. Tran Thi My
Hanh, my thesis advisor, for her help and support. It’s thanks to her conscientious
academic support that I’ve earned much experience, knowledge, and improved
myself. I deeply esteem how she put her enthusiasm, patience, and thoughtfulness in
treating me and other students.
I am particularly grateful for the assistance given by the marine, central, algae lab
technicians: Ms. Chau, Ms. Lan, and Mr. Long for providing me knowledge about the
lab instruments and their kindness.
Assistance provided by my seniors: MSc. Tuyen, Mr. Quan, Ms. Quyen, Ms. Nhi was
greatly appreciated. I would also like to thank my labmates, Ms. Nguyen, Ms. Ha,
Nam, Ms. Vy, Ms.Yen for their great help, the positive psychological atmosphere they
provided, and an especial thank to Ms. Nhu who shared her experience, knowledge
and supported the chemicals for my TLC test. My grateful thanks are also extended to
my volunteer - Truc for being energetic, enthusiastic, and willing to help.
I would also like to extend my thanks to the technicians of the laboratory B16 in
VNUHCM-University of Science for being open-hearted and sharing their knowledge
about HPLC to me.
Finally, I wish to thank my parents for their support and encouragement throughout
my study.
DETECTION AND QUANTIFICATION OF L-DOPA IN
SELECT SPECIES OF SLIME MOLDS AND PUFFBALLS
Kiet X.A Do1, Hanh T.M Tran2
1
School of Biotechnology, International University, Vietnam National University in
HCMC.
2
Corresponding author’s email address: ttmhanh@hcmiu.edu.vn
Contents
Abstract..................................................................................................................1
I. Introduction........................................................................................................2
II. Materials and methods.......................................................................................9
1. Materials:........................................................................................9
2. Method...........................................................................................10
2.1. P. polycephalum culture..........................................................10
2.2. P. polycephalum collection......................................................10
2.3. L-DOPA extraction for TLC and HPLC.......................................10
III. Results and discussions..................................................................................12
1. Detection of L-DOPA in the samples by TLC...................................12
2. High performance liquid chromatography......................................14
IV. Conclusions and recommendations..................................................................18
V. References....................................................................................................................................19
Abstract
L-DOPA is an amino acid which is clinically used for Parkinson's deasease’s
treatment.Even though synthetic L-DOPA is effective and in high demand, but some
severe side effects have been reported from patients on long term L-DOPA medication.
The objectives of this study were to detect the presence and determine L-DOPA
contents in slime molds (Physarum. polycephalum), and puffballs (Calvatia
craniiformis, and Lycoperdon pyriforme) by thin-layers chromatography (TLC) and
high-performance liquid chromatography (HPLC).
To detect the presence of L-DOPA, TLC was applied using homogenate of formic acid
2% and samples, silica gel plate 60 F254 (Merck PGaA, Germany) as stationary phase,
and the solvent mixture of isopropanol: ethyl acetate: water: glacial acetic acid
(29:19:10:1) as mobile phase. The results suggested the presence of L-DOPA in both
the slime mold and puffball samples.
1
I. Introduction
L-3,4-dihydroxyphenylalanine (L-DOPA) is an amino acid derived from the
hydroxylation of the amino acid L-tyrosine (Slominski et al., 2012). L-DOPA was first
isolated from Vicia faba by Marcus Guggenheim from 1913 and has always been the
first drug of choice in the treatment of Parkinson’s disease since discovered in the
1960s. Parkinson’s disease is a long-term degenerative disorder. It’s caused by the
brain cell’s death in a region of the midbrain called substantia nigra. This leads to the
deficiency of dopamine in this region that affects the motor system. L-DOPA, which
able to cross the blood-brain barrier whereas dopamine cannot (Hardebo et al., 1980),
is converted by decarboxylase into dopamine, a neurotransmitter that responsible for
neural communication that controls body movement and a key factor in the treatment
of the disease. For more than 50 years since the clinical use of L-DOPA was
discovered, L-DOPA has still been mentioned as the gold standard for Parkinson’s
disease treatment (Tambasco et al., 2018).
Therefore, many approaches have been made to meet the high demand for L-DOPA.
L-DOPA is currently synthesized chemically for pharmaceutical use by an asymmetric
synthesis method called the Monsanto process (Knowles et al., 1986). On the other
hand, L-Tyrosine, which is a precursor of L-DOPA is used for biotechnologically
synthesis of L-DOPA by a one-step process of oxidation catalyzed by tyrosinase
(Algieri et al., 2012). In fact, L-DOPA is an intermediate in melanin biosynthesis. Thus,
many species that have black pigment melanin are selected to research as a possible
source of L-DOPA. Conventional production of L-DOPA involves the extraction of L-
DOPA from Mucuna pruriens seeds and it is marketed as tablets under various brand
names (Ali & Haq, 2006a). Thanks to the characteristics such as, simple cultivation
2
process, low risk of contamination Mucuna pruriens bean is very common as a L-DOPA
source though the L-DOPA
content is not too high and requires long duration cultivation at least 45 days. The
following sources share many characteristics such as, requiring extraction step,
contamination risk, and requiring induced factor or L-tyrosine as a precursor. Though,
they take less time in cultivation. The other plant sources mainly from Mucuna
pruriens cell suspension (Chattopadhyay et al., 1994), callus cultures of banana
(Bapat et al., 2000) and Portulaca grandiflora (Rani et al., 2007). L-DOPA is also
3
produced from Aspergillus oryzae, fungal biomass in buffer containing L-tyrosine (Ali &
Haq, 2006a) and Acremonium rutilum produced in a potato dextrose broth
(Krishnaveni et al., 2009). The yeast (Yarrowia lipolytica) biomass is used to produce
the L-DOPA in a buffer containing L-tyrosine provided with enhancing material
diatomite (Ali et al., 2007). The bacterial species reported to synthesize L-DOPA are
Escherichia intermedia cells immobilized in polyacrylamide gel using pyrocatechol
(Para & Baratti, 1988) and Erwinia herbicola using catechol as a substrate (Koyanagi
et al., 2005). It is also produced from mutant strains of actinomycetes in a broth
containing L-tyrosine (Sukumaram et al., 1979; Surwase and Javhab., 2010).
Myxomycetes known as slime molds were confused as a part of the fungi kingdom.
They are now classified as Protista. Slime molds have the appearance of gelatinous
slime. The slime molds are single-cell organisms but can congregate together to move
as a single body to seek for a food source and produce fruiting bodies to release
spore.
plasmodium stage. Myxomycetes feed by sweeping over and cover all the bacteria and
organic material in their path (Tran et al., 2015). Myxomycetes grow very fast at this
stage. Especially, it takes a short time to collect sample in just around 4-7 days of
4
laboratory cultivation. Plasmodia can be cultured in solid medium and liquid medium.
In liquid medium, small plasmodia can be fragmented into microplasmodia, which can
be subcultured repeatedly to yield large quantities of microplasmodia. Both plasmodia
and microplasmodia share the same characteristics of rapid growth rate and absence
of cell wall which are suitable for cultivation and L-DOPA extraction (Daniel & Rusch,
1961; Tran et al., 2015). One group of myxomycetes that has been successfully
cultured is the order Physarum (Gray and Alexopoulos et al., 1968, Lado et al., 2007).
Physarum polycephalum belong to this group and has been used as a model organism
in many studies. It was considered as a potential source for biodiesel due to the rapid
rate of growth and produce a considerable amount of lipids (Poulos & Thompson,
1971; Tran et al., 2012). The optimization of biomass and lipid of it is also evaluated
(Tran et al., 2015).
There are some unpublished articles from our group about the presence of L-DOPA in
the other species. Le, et al., 2017, has determined the amount of L-DOPA is 2.5165
mg/g dried biomass in Phy. oblonga and 2.2138 mg/g dried biomass in Ph.
5
polycephalum using HPLC. Nguyen, et al., 2019 showed evidence that incubation time,
UV light and light can affect the L-DOPA production in Ph. polycephalum by using
HPLC. The data showed that L-DOPA content in the incubation condition increased in
the first 2 days then started to decrease. The data also showed that the L-DOPA
content decreased in light and UV light exposure conditions. But for the sample
cultured in liquid medium in light exposure condition, L-DOPA content increased in the
first 4 hours then started to decrease. On the other hand, Tran et al., 2020 concluded
optimum Hematin concentration in the culture medium is 2.5 µg/ml to optimize L-
DOPA content in Ph. polycephalum.
For not being intergrated as plasmodium form, the microplasmodia can asynchronous
divide their cells in different microplasmodium to grow. That results in slime molds
being incubated as microplasmodia has the higher biomass/time than slime molds
being incubated as plasmodia (Dove and Rusch, 1980). Therefore, to optimize all of
the slime molds cultivation, the goal is to transfer them to their consistent liquid
medium.
Puffball is the name of the mushrooms that release clouds of visible spore when their
fruiting bodies burst. Puffballs were classified as the same group of taxonomy in the
past but at the present, they are separated into 3 genera Calvatia,
Calbovista, and Lycoperdon (Freedman, 1987). Stalk-visible puffballs are classified as
false puffballs. All of the false puffballs are inedible while most of the true puffballs are
edible at their immature stage because their inner white flesh hasn’t been
differentiated to gleba – the spore-bearing inner mass (Miller, 1977). Their fruiting
bodies are also visible to search for and durable. As puffballs have these properties,
they have advantages over the slime molds because the slime molds fruiting bodies
are very small, ephemeral, and soft (Rikkinen, 2019). Since myxomycetes haven’t
been reported about their toxicity, they are not commonly used as food because they
mostly settle on unsanitary spots due to their feeding behavior.
6
Figure 1.5. Calvatia craniiformis samples
There are some bioactive compounds that have been found from Lycoperdon
pyriforme: 4-methoxy-benzene- 1-azoformamide (1) and 4-methoxybenzene-1-0"-
azoxyformamide (2) and the chlorinated derivative 3.5-dichloro-4- methoxybenzene-
1-ONN-azoxyfonnamide (3). Compounds (1) and (2) are active against the plant
parasitic nematode Meloidogyne incognita but not active against the saprophytic
nematode Caenorhabditis elegans, exhibit weak antimicrobial effect against Nadsonia
fulvescens and Penicillium notatum. Compound (3), which is less active towards
nematodes but more cytotoxic compared to (1) and (2) (B. Köpcke et al., 2006; Z. M.
Thu et al., 2020). In another study, β-Glucosinase has been characterized and isolated
successfully from L. pyriforme (M.Y. Akatin, 2011).
From the appearance the fruiting bodies, we can see the puffballs has the color of dark
pigments (black, brown) which can be the evidence of melanin presence. Especially,
the name puffball was given based on their cloud of brown spores when they burst. It
is known that the inner white flesh turns into dark color due to the differentiation of
the inner white flesh into spore with brown color. Therefore, there’s must be a
relationship between the spore forming process with the melanin synthesis. Since L-
DOPA is one of the precursors of melanin synthesis pathway, puffballs have the strong
evidences of the L-DOPA presence.
The objectives of this research were to detect the presence of L-DOPA in slime molds
(P. polycephalum), and puffballs (C. craniiformis, and L. pyriforme) by thin-layers
7
chromatography (TLC) and then quantify the L-DOPA contents of the sample using
HPLC. This project provides information on L-DOPA production in slime molds and
puffballs, which can be used to clarify the potential of these species for Parkinson’s
disease treatment.
8
II. Materials and methods.
1. Materials:
P. polycephalum was obtained from the myxomycetes culture collection of the Applied
Microbiology Laboratory (School of Biotechnology, Ho Chi Minh International University, Ho
Chi Minh City, Vietnam). P. polycephalum was cultured in both solid and liquid medium. The
solid medium had the addition of 1.5% agar and the pH adjusted to 5.6 while liquid pH was
adjusted to 4.6. The other ingredients followed the optimal medium recipe:
Optimal medium
Tryptone 6.59 g
Dextrose 20.0 g
KH2PO4 20.0 g
9
C. craniiformis puffball fruiting bodies were kindly collected in July from the lawn of
the University of Mahidol in Thailand and provided by Dr. Edward Grand (Mahidol
University, Nakhon Pathom, Thailand).
L. pyriforme puffball fruiting bodies were kindly collected and provided by Prof.
Stephenson (University of Arkansas, Northwest Arkansas, USA).
The puffballs samples were dried and grounded into fine powder using herbal grinder
machine.
2. Method
2.1. P. polycephalum culture
P. polycephalum in liquid culture took 4 days of incubation at room temperature. Each
sample was incubated in a 100-ml volumetric flask covered with a black plastic bag to
prevent light in the orbital shaker. Each flask of medium received 10 ml of the liquid
sample and 100 µl of hematin (Daniel et al., 1962).
P. polycephalum in solid culture took 2 days of incubation at room temperature. Each
sample was incubated in a 200mm petri dish and contained in a carton box to prevent
light. Each petri dish received a portion of plasmodium around 1.5 cm2 and 100 µl of
hematin (Daniel et al., 1962).
10
minutes. The supernatant was filtered through nylon syringe filter (0.45 µm, Φ 15
mm). The supernatant was collected to be used in the TLC process.
Puffballs need the cell-wall disruption treatment before going through the TLC test. 1g
of the sample was suspended in 15 ml cold buffer (Tris 50 mmol/L, pH 7.5). Mortar
and pestle were used to demolish the samples. The supernatant is collected by
applying centrifugation on homogenate (6.000 rpm, 20 minutes, 4°C). The
supernatant was filtered through nylon syringe filter (0.45 µm, Φ 15 mm). The
supernatant was mixed well with formic acid in a 1:1 ratio.
The thin-layers chromatography uses the system of silica gel plate C60 F254 (Merck
KGaA, Germany) as stationary phase and isopropanol: ethyl acetate: water: glacial
acetic acid (29:19:10:1) (Loganathan, 1998) as mobile phase. After the TLC plate had
been developed, it was dyed by ninhydrin dye. The ingredient of ninhydrin dye is 1.5g
ninhydrin, 100mL n-butanol, and 3 mL glacial acetic acid (Cai, 2008).
11
III. Results and discussions
1. Detection of L-DOPA in the samples by TLC
Capillary tubes were used to for doting, thus the volume of each drops are not
accurately equal to each other. Samples were maintained in ice bucket to prevent
protein denaturation. After doting 1 spot, the capillary tube was washed by acetone
before taking new sample. The TLC plate for slime molds samples (Figure
3.1.1.1) (75 mm) was larger than the TLC plate for puffball (Figure 3.1.1.2) (50 mm).
Though the larger TLC plate took longer retention time - 45 min to develop and the
smaller one took 15 min to develop, the separation wasn’t improved much - the L-
DOPA spot of L-DOPA standard on the larger plate still had a long smear.
54 mm
The Rf of L-DOPA in the larger TLC plate (Figure 3.1.1.1) is R f 1= =0.831
65 mm
35 mm
The Rf of L-DOPA in the smaller TLC plate (Figure 3.1.1.2) is R f 2= =0.833
42mm
12
The TLC process didn’t go through any treatment to separate amino acids and
proteins. Therefore, ninhydrin could have dyed the both types of compounds and the
bands at L-DOPA position can be the mixture of L-DOPA and several amino acids
which have the similar polarity. Even though, the presence of these bands raise the
possibility of the L-DOPA presence and be the basis for HPLC analysis.
The result of TLC was not very clear as it couldn’t form bands separately. Even
though, we can still see the blur bands are present at the same distance of standard
L-DOPA spot movement in the samples. Besides, the bands of L-DOPA of samples
were expected to have light color because 1 mg dried biomass of slime molds was
diluted into 10 ml formic acid solution and 1 mg fresh biomass of puffballs was diluted
into 30 ml including Tris buffer and formic acid solution. Since the dilution factor of
puffballs is doubled in comparison with slime molds, the amount of puffball
homogenate in the TLC test was also double.
The TLC plate for the slime mold test (7.5 cm) was longer than the puffball’s one
because it was supposed to separate the bands properly with the longer retention
time. But still, the bands could not separate as well as expected so the puffball
samples use the normal length TLC plate (5 cm). The method still needs improvement
for the proper separation since the L-DOPA standard still has a long smear below the
band.
13
The method of extraction for puffballs was not fit for extracting L. pyriforme sample.
The maximum rpm was 6000 which was not enough to separate the supernatant from
the residue.
14
2. High performance liquid chromatography
All the HPLC results have the presence of the peaks at the same retention time in
HPLC result of L-DOPA standard which can be considered as L-DOPA’s peaks. L-DOPA
from all of the samples were extracted effective since all their L-DOPA expected peaks
base on L-DOPA standard (Figure 3.1.2.1) are separated from the other components’
peaks reliably. The shapes of the peaks are also reliable in height and width (the
height is not low and width is not large).
15
In TLC results, bands of microplasmodia of P. Polycephalum in solid medium had
denser color. Base on the HPLC, the TLC result is explainable since in microplasmodia
result, there are presence of more compounds that are nearly similar to L-DOPA. On
the other hand, the L-DOPA content in microplasmodia is also much higher than
plasmodia. There would be a prediction that protein content in microplasmodia is
higher than plasmodia
16
The TLC results of C. craniiformis don’t have much different between bands in sample
with immature spores and sample with mature spores’ ones. Besides, their L-DOPA are
also not much different from each other. The TLC result is quite explainable base on
the HPLC result since they also didn’t have many differences in the L-DOPA-like
components.
2.49
2.5
2.22 2.28
2.07 2.14
2
L-DOPA conc. (mg/g)
1.5
0.5
0
Solid medium P. Liquid medium P. Immature spore Mature spore C. L. pyriforme
polycephalum polycephalum C. craniformis craniformis
17
Figure 3.2.7. L-DOPA content of slime molds and puffballs
18
research. There’s an available HPLC method to separate L-DOPA and D-DOPA by
forming the L-Leucine derivatives of DOPA (Hermansson & Wiese, 1981).
19
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