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Occurrence of Grapevine Pinot Gris Virus in Friuli Venezia Giulia (Italy) : Field Monitoring and Virus Quantification by Real-Time RT-PCR
Occurrence of Grapevine Pinot Gris Virus in Friuli Venezia Giulia (Italy) : Field Monitoring and Virus Quantification by Real-Time RT-PCR
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Occurrence of Grapevine Pinot gris virus in Friuli Venezia Giulia (Italy): field
monitoring and virus quantification by real-time RT-PCR
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Since 2003 the presence of a new syndrome characterized by symptoms of stunting, chlo-
rotic mottling, leaf deformation, reduced yields and quality has been reported in some white
berry varieties of Vitis vinifera in Trentino-Alto Adige and Friuli Venezia Giulia vineyards.
The identification of a new virus, provisionally called Grapevine Pinot gris virus (GPGV),
in a cv. Pinot gris vine suggested an association between this new syndrome and the virus
presence (Giampetruzzi et al., 2012), however the contemporary presence of GPGV in both
symptomatic and asymptomatic plants has still to be explained. In this work, a large-scale
monitoring over a 3-year period (2012–14) of Friuli Venezia Giulia vineyards and nurseries
has shown a widespread presence of GPGV in symptomatic plants and also in asymptomatic
vines, even if at a slightly lower percentage. Quantitative analyses of the virus titer revealed
a great variability in the viral content of both symptomatic and asymptomatic plants but the
mean GPGV quantity in symptomatic vines was significantly higher than in asymptomatic
plants.
not establish a clear link between the new virus and the
Introduction
observed syndrome. Moreover, the two vines revealed the
Since 2003 the presence of a new syndrome characterized presence of five other well-known viruses and viroids:
by symptoms of stunting, chlorotic mottling, mosaic and Grapevine rupestris stem pitting associated virus
deformation of leaves, reduced yields and low quality of (GRSPaV), Grapevine rupestris vein feathering virus
berries has been reported in some varieties of Vitis vinifera (GRVFV), Grapevine Syrah virus 1 (GSyV-1), Hop stunt
in Trentino-Alto Adige and Friuli Venezia Giulia vineyards viroid (HSVd) and Grapevine yellow speckle viroid 1
(Northern Italy) (Fig. 1). Pinot gris, Traminer, Friulano (GYSVd-1) which could interact with GPGV and thus
(Tocai) and Glera (Prosecco) are the most commonly affect disease expression (Giampetruzzi et al., 2012).
affected cultivars in the Friuli Venezia Giulia region. The genome organization of GPGV was identical to that
Symptoms appear soon after sprouting and in most cases, of Grapevine berry inner necrosis virus (GINV), a trichovi-
after a stage of poor vegetation, plants recover from symp- rus already reported in Japan, which caused very similar
toms and start to develop normally so that in late summer symptoms; but their sequence differences allowed classifi-
it is difficult to find symptomatic leaves. cation in two independent species (Giampetruzzi et al.,
These symptoms were initially ascribed to different 2012).
causes, such as damage from thrips or mites, boron defi- The GPGV virus was subsequently recorded by RT-PCR
ciency, viruses, phytoplasmas and, because of the small in other Italian regions (Emilia-Romagna, Veneto and Friuli
number of symptomatic plants, they were often underesti- Venezia Giulia) as well as in the Republic of Korea, Slove-
mated. It was only in a few vineyards, located in the Gori- nia, Slovakia, the Czech Republic and Greece (Martelli,
zia province (Friuli Venezia Giulia region, Italy), that the 2014). During spring 2014, GPGV was found in two dis-
syndrome affected a great number of vines, with a conse- tinct areas of Apulia (Southern Italy) in several vines of the
quent significant loss of production. table grape cvs. Black Magic and Supernova (Morelli
In 2012, deep sequencing of the small RNA population et al., 2014).
of two cv. Pinot gris vines collected in the Trentino region The analysis of the complete genome sequence of three
(Italy), one symptomatic and the other asymptomatic, led to Slovak isolates of GPGV revealed a close relationship to
the identification of a new virus, with the provisional name the Italian isolate, together with an elevated divergence in
of GPGV (Grapevine Pinot gris virus) which could be the 50 extremity (Glasa et al., 2014). As all GPGV-infected
involved in this disease (Giampetruzzi et al., 2012). As the Slovak and Czech vines were infected by other viruses, the
presence of GPGV was reported in both symptomatic and authors could not link any typical symptom to the virus
asymptomatic deep sequenced plants, this research could (Glasa et al., 2014).
22 ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
GPGV in Friuli Venezia Giulia 23
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
24 G. L. Bianchi et al.
Table 1 Primers and probes for real-time RT-PCR and for plasmid preparation
Primer/probe name Length (bases) Sequence 50 -30 Nucleotide position Acc. No.
GRSP-RT2F, antisense GRSP-RT2Ra+GRSP-RT2Rb, probe Similarly to the GRSPaV real time RT-PCR system, a
GRSP2Poz and the same reaction mixture, final oligo con- mean Cq value <30, with a baseline threshold set to 100
centrations and thermal protocol used for GPGV one-step RFU, was used as a threshold for amplificability of the
real-time RT-PCR assay. isolated RNA.
When the GRSPaV-test failed or a mean Cq value ≥30
was obtained, using a baseline threshold always set to 100
Detection of GPGV-associated viruses
RFU, another system based on a grapevine reference gene
was used. In particular, a primer couple was designed When GPGV was discovered for the first time, it was asso-
within two exons spanning a 650 bp-region comprising 2 ciated with the presence of 5 more viruses: Grapevine ru-
introns and another exon of the grapevine chaperonine 21 pestris stem pitting associated virus (GRSPaV), Grapevine
gene (Acc. No. AY680699). Under normal real-time RT- rupestris vein feathering virus (GRVFV), Grapevine Syrah
PCR cycling conditions, amplification of this large PCR virus 1 (GSyV-1), Hop stunt viroid (HSVd) and Grapevine
product was not favored and therefore genomic DNA yellow speckle viroid 1 (GYSVd-1). In order to disclose
amplification was prevented. Real-time RT-PCR for the any interaction between these pathogens and GPGV, the
chaperonine 21 gene was performed making use of the 262 samples collected in 2013 were further analyzed.
QuantiFast Multiplex RT-PCR + R kit (Qiagen) and the Two duplex one-step real-time RT-PCR were designed
following primers/probe mixture: ChaPozFrna2, ChaPoz1R for the contemporary detection of GRVFV + GSyV-1 and
and ChaPozP1 probe, each at a final concentration of HSVd + GYSVd-1, respectively. The 25 lL real-time RT-
0.2 lM. PCR mixture contained 5 lL total RNA, 400 nM each
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
GPGV in Friuli Venezia Giulia 25
sense and anti-sense primer, 100 nM each hydrolysis probe, instructions. Plasmid DNA concentration was determined
12.5 lL of the 29 QuantiFast Multiplex RT-PCR Master by measuring absorbance at 260 nm with an Epoch spectro-
Mix and 0.25 lL QuantiFast RT Mix (Qiagen). The prim- photometer (Biotek, Winooski, VT, USA). Plasmid DNA
ers/probe combinations were the following: sense copy number was then calculated on the basis of plasmid
GRVFVPozFa+GRVFVPozFb, antisense GRVFVPozR and DNA concentration and its molecular weight (Applied Bio-
GRVFV-P probe for amplification of GRVFV; sense systems, 2003). Plasmid DNA was stored at 20°C.
GSyV-1PozF, antisense GSyV-1PozR and GSyV-1PozP
probe for amplification of GSyV-1; sense GYSVd-1 Po-
PCR efficiency and LOD
zFa+GYSVd-1 PozFb, antisense GYSVd-1 PozR and GY-
SVd-1P probe for amplification of GYSVd-1; sense In order to determine PCR efficiency and the limit of detec-
HSVdPozFa+HSVdPozFb, antisense HSVdPozR and tion (LOD), calibration curves were generated from dilution
HSVdPozP probe for HSVd-detection (Table 1). series of recombinant plasmids, in which the cloned
All RT-PCR reactions were performed on a CFX96 sequence was present at 5 9 106, 5 9 105, 5 9 104,
Real-time PCR thermalcyler (Bio-Rad) with the following 5 9 103, 5 9 102, 50, 25 and 12.5 copies. Each dilution
program: 50°C for 30 min; 95°C for 5 min; 45 cycles of point was run in ten replicates. The CFX Manager Software
denaturation at 95°C for 5 s and annealing/extension at 3.0 (Bio-Rad) automatically calculated PCR efficiency, line
60°C for 30 s. equation and R2.
For GRSPaV detection, a simplex RT-PCR described in
the previous paragraph was used.
Two-step real-time RT-PCR assay for relative virus
quantification
Standard plasmid DNA controls
cDNA synthesis
Three plasmids were generated for quantitative assays: Reverse transcription (RT) was carried out using the iScript
pGPGV-RDRP harbouring a GPGV RNA dependent RNA cDNA Synthesis kit and a blend of oligo(dT) and random
polymerase sequence; pGPGV-CP with the GPGV capsid hexamer primers (Bio-Rad). The total volume of the RT
protein sequence and pGAPDH for the reference plant glyc- mix was 20 lL per reaction, containing 4 lL 59 iScript
eraldehyde 3-phosphate dehydrogenase (GAPDH) gene reaction mix, 1 lL iScript reverse transcriptase and 15 lL
(Acc. No. EF192466). of total RNA template. The reaction was incubated for
The cDNA derived from a GPGV-infected vine cv. Pinot 5 min at 25°C; 60 min at 42°C and 5 min at 85°C in an
gris was used as template for the isolation of a 493 bp frag- iCycler iQ multicolor Real-Time PCR (Bio-Rad). The
ment corresponding to a portion of the putative RNA resulting cDNA was stored at 40°C.
dependent RNA polymerase and a 588 bp amplicon repre-
senting most of the coat protein gene. In order to amplify Simplex real-time PCR
the first transcript, the following primers were used: sense GPGV quantification in cDNA samples was performed by
GPgV424f, antisense GPgVPozRTR; for the second tran- simplex quantitative real-time PCR. The primers/probe sets
script sense GPgV 1 F, antisense GPgV588R (Table 1). were the same as those used in the one-step real-time RT-
The PCR reaction was set up using the Advantage-HF PCR PCR and complementary to the coat protein target sequence
kit (Clontech Laboratories Inc., Mountain View, CA, USA) (Table 1). In each PCR run, serial dilutions of control plas-
as follows: 5 lL cDNA, 2.5 lL 109 HF PCR buffer, mids were included with known amounts of input copy
2.5 lL 109 HF dNTP mix, 0.5 lL 509 Advantage-HF number in order to draw calibration curves for the target
Polymerase Mix, 800 nM each primer, purified H2O to final gene and for the endogenous plant reference gene (GAP-
volume 25 lL. DH). For each sample, 2 independent estimates were per-
Similarly, the GAPDH sequence was isolated using GAP- formed. The real-time system for the GAPDH reference
DH-1F and GAPDH-1R primers from a cv. Pinot gris vine. gene comprised the following oligonucleotides: GAPDH-
All reactions were carried out with the iCycler iQ multi- 3F, GAPDH-1R and GAPDH probe (Table 1).
color Real-Time PCR thermalcycler (Bio-Rad) and run with The total volume of the real-time PCR mix was 25 lL
the following program: 94°C, 1 min; 35 cycles at 94°C, per reaction, containing 12.5 lL 29 iQ Supermix (Bio-
15 s; 60°C, 30 s; 68°C, 1 min; final extension 68°C, 3 min. Rad), 400 nM each primer, 100 nM each hydrolysis probe
The amplified products of both reference and target and 2.5 lL of cDNA. Each reaction was performed using a
genes were purified using Nucleospin PCR & gel clean up CFX96 Real-time PCR thermalcyler (Bio-Rad) with the fol-
columns (Macherey-Nagel, Dueren, Germany) and cloned lowing PCR conditions: 3 min at 95°C and 50 cycles of 5 s
in a pGEM-T vector (Promega Corporation, Madison, WI, at 95°C and 30 s at 60°C.
USA) following the supplier’s instructions. The recombi-
nant plasmids were transferred to Escherichia coli JM101 Real-time PCR data analyses
competent cells and subsequently purified using QIAprep The quantification plots and calibration curves were ana-
Spin Miniprep Kit (Qiagen) according to the manufacturer’s lyzed using the CFX Manager Software 3.0 (Bio-Rad) with
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
26 G. L. Bianchi et al.
the threshold manually set at 100 RFU. Slope, R2 and PCR Cq-values were measured in 10 replicates and plotted
efficiency of calibration curves were automatically calcu- against the known copy numbers of the standard samples.
lated by the software. A strong linear relationship between the Cq and the log of
The % ratio between the mean starting quantities (SQ) the copy number was verified (R2 ≥ 0.99). The slope of
of GPGV target gene and GAPDH was calculated for standard curve was 3.4, and the efficiency of the reaction
each sample. All data were statistically analyzed by one- calculated by 10(1/slope)1 ranged between 94.1–97.6%
way ANOVA with P ≤ 0.05, using the software package (Table 2).
CoStat version 6.101 (CoHort Software, Monterey, CA, The new real-time RT-PCR assays were sensitive enough
USA). to detect 25 copies of pGPGV-RDRP and 12.5 copies of
pGPGV-CP and proved suitable for target cDNA quantifica-
tion in infected tissues.
Results
The real-time RT-PCR system: specificity and GPGV monitoring in the Friuli Venezia Giulia region
sensitivity
From 2012 to 2014, a total of 1294 samples were collected
The primers and probes for GPGV detection were designed from different vineyards and nurseries across the region.
in two distinct regions of the GPGV sequence (Acc. no. 480 symptomatic and 814 asymptomatic Vitis vinifera
FR877530; Giampetruzzi et al., 2012), including the RNA plants were sampled among susceptible varieties (Pinot gris,
dependent RNA polymerase gene and the coat protein gene. Traminer, Friulano/Tocai and Glera/Prosecco) from produc-
By aligning the FR877530 sequence with the Slovak iso- tive vineyards and scion mother plant nurseries. Vines were
lates of GPGV (Acc. nos. KF134123-24-25; Glasa et al., selected during May-June from both vineyards unaffected
2014), it is clear that the first RT-PCR assay spans a vari- by the syndrome and vineyards with noticeable symptoms.
able region which is ascribed to the RNA dependent RNA In the latter case, both symptomatic and asymptomatic
polymerase gene by Giampetruzzi et al. (2012) or to the plants were sampled. For each vine, about 5–20 leaves
methyltransferase gene by Glasa et al. (2014) (Fig. 2). (depending on the size of petioles) were harvested and the
Specificity of primers and probes was assessed in silico total RNA extracted from petioles was quality assessed and
using nucleotide BLAST (Zhang et al., 2000) and no sig- subsequently subjected to one-step real-time RT-PCR for
nificant homology for other plant or viral sequences was GPGV detection.
found (data not shown). During the first year of monitoring, samples were ana-
The sequencing of the amplified product obtained with lyzed only for the presence of the GPGV RNA dependent
the coat protein RT-PCR system confirmed a high degree RNA polymerase gene.
of identity with GPGV sequence Acc. no. FR877530, rang- In the second year, a multiplex one-step real-time RT-
ing from 96 to 100% depending on the sequenced amplicon PCR was used for the contemporary detection of both
(data not shown). The amplified products were also verified GPGV RNA dependent RNA polymerase gene and coat
using gel electrophoresis (data not shown). protein gene. In some cases (17.9%) the results obtained
The linear range of quantification of the real-time PCR with the two RT-PCR systems were discordant (Table 3),
assays for GPGV RNA dependent RNA polymerase gene, but these samples were considered GPGV-infected. In
GPGV coat protein gene and GAPDH reference gene was 2014, a greater number of samples was analyzed only for
determined by using serial dilutions of recombinant stan- the presence of the GPGV coat protein gene.
dard plasmids ranging from 5 9 106 to 12.5 copies to The number of vines that tested positive for GPGV and
determine the limit of detection (LOD) and the linearity of their distribution across symptomatic and asymptomatic
the assay. clusters are reported in Fig. 3.
A
KF134124.1 SK01 7093 GAATCGCTTGCTTTTTCATGTCGAAAGTGAGAAGCAAAAGACTAATGCTATCACGGCTTCGGGGGAGAGTGCATTTAGTATGTAG 7177
KF134125.1 SK13 7093 GAATCGCTTGCTTTTTCATGTCGAAAGTGAGAAGCAAAAGACTAATGCTATCACGGCTTCGGGGGAGAGTGCATTTAGTATGTAG 7177
KF134123.1 SK30 7093 GAATCGCTTGCTTTTTCATGTCGAAAGTGAGAAGCAAAAGACTAATGCTATCACGGCTTCGGGGGAGAGTGCATTTAGTATGTAG 7177
KF686810.1 SK30-1 7093 GAATCGCTTGCCTTTTCATGTCGAAAGTGAGAAGCAAAAGACTAATGCTATCACGGCTTCGGGGGAGAGTGCATTTAGTATGTAG 7177
FR877530.1 7092 GAATCGCTTGCTTTTTCATGTCGAAAGTGAGAGGCAAAAGACTAATGCTATCACGGCTTCGGGGGAGAGTGCATTTAGTATGTAG 7176
AB731567.1 504 GAATCGCTTGCTTTTTCATGTCGAAAGTGAGAAGCAAAAGACTAATGCTATCACGGCTTCGGGGGAGAGTGCATTTAGTATGTAG 588
Coat Protein amplicon 1 GAATCGCTTGCTTTTTCATGTCGAAAGTGAGAAGCAAAAGACTAATGCTATCACGGCTTCGGGGGAGAGTGCATTTAGTATGTAG 85
B
FR877530.1 803 ACCAATCTAATAAAGACTTCAAAGGGGCATTATTCTGTAAGTCTCCACCGTTCTGTCGGTTCCCACCACTTTTTTCAGATAAGTAAATATGAGTCGGAGATCCT 906
KF134124.1 SK01 813 ACCAATCTGATAAAGACTTCAAAGGGGCATTATTCTGTAAGTCTCCATCGCTCCGTCGGTTCCCATCACTTCTTTCAGATAAGTAAATATGAGTCAGAGATCCT 916
KF134125.1 SK13 813 ACCAATCTGATTAAGACTTCAAAGGGGCATTATTCTGTAAGTCTCCACCGTTCCGTCGGTTCCCATCACTTCTTTCAGATAAGTAAATATGAGTCGGAGATCCT 916
KF134123.1 SK30 813 ACCAATCTGATAAAGACTTCAAAGGGGCATTATTCTGTAAGTCTCCACCGTTCCGTCGGTTCCCATCACTTCTTTCAGATAAGTAAATATGAGTCGGAGATCCT 916
KF686810.1 SK30.1 813 ACCAATCTGATAAAGACTTCAAAGGGGCATTATTCTGTAAGTCTCCACCGTTCCGTCGGTTCCCATCACTTCTTTCAGATAAGTAAATATGAGTCGGAGATCCT 916
RNAdRp amplicon 1 ACCAATCTAATAAAGACTTCAAAGGGGCATTATTCTGTAAGTCTCCACCGTTCTGTCGGTTCCCACCACTTTTTTCAGATAAGTAAATATGAGTCGGAGATCCT 104
Fig. 2 Alignment of all the GPGV sequences available in GenBank database release 204.0 (Benson et al., 2013) in the regions used for primers and
probes design. A - coat protein region; B - RNA dependent RNA polymerase region. The primers and probes used in this work are underlined.
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
GPGV in Friuli Venezia Giulia 27
Table 2 Calibration curves parameters. The standard curves were obtained by amplification of dilutions starting from 5 9 106 to 12.5 copies of the
recombinant plasmids pGPGV-RDRP, pGPGV-CP and pGAPDH
16 GPGV Positive
14 GPGV Negative
12
Number of plants
10
8
6
4
2
0
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
28 G. L. Bianchi et al.
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
GPGV in Friuli Venezia Giulia 29
(1) Symptomatic plants collected from Symptomatic vine- Statistical analysis based on the Duncan’s multi-range test
yards (Sp-Sv) revealed that a significant decrease (P ≤ 0.05%) in the virus
(2) Asymptomatic plants collected from Symptomatic vine- content of both populations occurred between May-June and
yards (Ap-Sv) September. The statistically significant difference observed
(3) Asymptomatic plants collected from Asymptomatic between the viral content of Sp-Sv and Ap-Sv populations
(syndrome-free) vineyards (Ap-Av) collected in May-June was not seen when the same popula-
(4) Asymptomatic rootstocks (Ar). tions were analyzed in September (Table 5).
The mean GPGV quantity, variation range, standard
deviation (SD) and variation coefficient (CV) for each pop-
Discussion
ulation were the following: Sp-Sv 64.9% (0.03% to 181%,
SD 48.4%, CV 74.6%); Ap-Sv 25.8% (0.001% to 89%, SD
GPGV monitoring in field samples
22.4%, CV 86.8%); Ap-Av 28.1% (0.001% to 65%, SD
24.1%, CV 85.9%); Ar 23.1% (0.03% to 86%, SD 24.9%, The availability of the GPGV genome sequence (Giam-
CV 108.0%). petruzzi et al., 2012) has allowed the development of
Statistical analysis (ANOVA) based on the Duncan’s molecular diagnostic methods based on conventional RT-
multi-range test at P ≤ 0.05% demonstrated that there was PCR (Giampetruzzi et al., 2012; Glasa et al., 2014). In
a significant difference in the mean virus content between order to perform a large-scale GPGV field monitoring, two
the Sp-Sv group and the other populations (Table 5). new real-time RT-PCR methods for the rapid screening of
17 symptomatic plants collected from symptomatic vine- a large number of plants were developed.
yards (Sp-Sv) and 17 asymptomatic plants collected from The first real-time RT-PCR system was designed in the
symptomatic vineyards (Ap-Sv) in May-June 2014 were variable GPGV genome region of the RNA dependent RNA
also sampled in September 2014 and analyzed for virus polymerase gene, while the second real-time RT-PCR sys-
quantification. All the sampled leaves were asymptomatic, tem amplified the highly conserved sequence of the GPGV
even when collected from vines showing symptoms on their coat protein gene (Fig. 2).
oldest leaves and shoots. The GPGV quantification data In the absence of a GPGV reference strain, the specificity
obtained from samples taken in May-June were compared of these methods was verified only in silico by comparison
to those from the same plants that were taken in September of the amplification targets with all the nucleotide
and an ANOVA was performed after anomalous data exclu- sequences available in GenBank and they were identical to
sion by Dixon’s test. GPGV. Both real-time RT-PCR assays were shown to have
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
30 G. L. Bianchi et al.
a high level of analytical sensitivity and could detect as atic plants with relative virus level close to 0% or symp-
few as 50/25 copies of GPGV target genes (Table 2). tomatic plants with a relative virus level >100%), all the
A field survey of GPGV in productive vineyards and populations, both symptomatic and asymptomatic, showed a
scion mother plant nurseries of susceptible varieties and great variability in the virus content.
rootstock varieties showed a widespread presence of the The mean GPGV content in a symptomatic population
virus across Friuli Venezia Giulia. GPGV was present in (Sp-Sv) was statistically significantly higher than the aver-
around 95% of analyzed symptomatic plants but also in age value for the other studied asymptomatic populations
61.5–87.1% of asymptomatic vines depending on the moni- (Ap-Sv, Ap-Av and Ar). No other statistically significantly
toring year. Saldarelli et al. (2013) have reported a 70% of correlations were recorded between different asymptomatic
GPGV-infected asymptomatic vines in cv. Traminer and populations.
Pinot gris vineyards. This work confirms the presence of Considering these data, it is not possible to suggest a
GPGV in a large number of asymptomatic plants, even if quantitative threshold or critical level that could be associ-
the percentage values may differ due to different specificity ated with symptoms expression on infected vines, but is
and sensitivity of the detection methods used. important to underline the higher mean level of virus in
In 2012-GPGV monitoring, when only the RNA depen- symptomatic plants, thus confirming the potential role of
dent RNA polymerase RT-PCR system was used, the rela- GPGV in the development of the syndrome. A possible
tive percentage of asymptomatic samples negative to RT- explanation of this behaviour may be related to the pres-
PCR was higher (38.5%) than the average recorded value ence of isolates having different virulence or with the pres-
in 2013 and 2014 (12.9% and 20.7%, respectively). This ence of other pathogens or stress factors in the plant.
could be explained by the fact that the sequence variability The comparison between quantification data collected in
in the RNA dependent RNA polymerase genome region May-June and in September demonstrated a statistically sig-
could prevent amplification of some GPGV variants. Simi- nificant decrease in the viral content of Sp-Sv and Ap-Sv
larly, when both real-time RT-PCR systems were used, populations while no statistically significant differences
results did not always agree (Table 3). Subsequently, the were observed between the two populations in September.
more reliable real-time RT-PCR system based on the Therefore the GPGV level of asymptomatic leaves may
GPGV coat protein gene was chosen as the preferential change during the vegetative season.
GPGV diagnostic method.
A small proportion of symptomatic plants tested negative
GPGV-associated viruses
for GPGV using these screening tests, which could be due
to several factors such as a GPGV level below the limit of The 2013 monitoring also excluded a possible role of the
detection, incorrect symptom identification in grapevines other virus identified with deep sequencing by Giampetruzzi
simultaneously infected by other viruses (true negatives) et al. (2012), because GRSPaV, HSVd and GYSVd-1 were
and the presence of GPGV isolates with variable sequences. always present in symptomatic and asymptomatic plants at
In agreement with Giampetruzzi et al. (2012), the GPGV high percentage; while the Marafivirus GRVFV and GsyV-1
field survey results confirmed a close relationship between were present at a lower percentage.
the presence of GPGV and the new syndrome, but at the
same time, the presence of the virus in a number asymp-
GPGV spread
tomatic plants prevented GPGV from being clearly identi-
fied as the etiologic agent of the new syndrome. GPGV discovery in the ERSA collections of clones stored
in a screen-house is the proof that GPGV was already pres-
ent in the candidate clones whose clonal selection began at
GPGV quantification
least 10 years ago. These plants were subjected to biologi-
In order to find a relationship between the expression of cal indexing of graft-transmissible virus using different
symptoms and virus titer, GPGV was quantified in 207 indicator plants including Vitis riparia cv. Gloire de Mont-
samples. In this study, the standard serial dilution curves pellier and the presence of GPGV was never detected. Con-
obtained with recombinant plasmids met the requirements versely, GPGV was efficiently transmitted by grafting to
for correct virus quantification. Therefore the real-time RT- Vitis riparia inducing specific symptoms (Saldarelli et al.,
PCR system based on the GPGV coat protein gene was 2013).
used to detect GPGV quantitatively in field samples. As In 2014, field observations of symptoms across the Friuli
absolute virus quantification is affected by RNA extraction Venezia Giulia region has revealed that the syndrome is
yields and reverse transcription efficiency, qPCR data were widespread in productive vineyards of susceptible cultivars,
normalized using GAPDH as reference gene. GAPDH was but, except for some isolated cases, the percentage of
selected as internal control for its expression stability in affected vines is limited (Fig. 6). Moreover, the health state
Vitis vinifera (Monteiro et al., 2013). of certified-scions is not currently of major concern, as
Except a few borderline cases where the correspondence symptoms affect less than 1% of plants of all the monitored
between symptoms and virus titer was evident (asymptom- nurseries. However, this situation could rapidly evolve.
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
GPGV in Friuli Venezia Giulia 31
Fig. 6 Classification of Friuli Venezia Giulia vineyards on the basis of the percentage of visually inspected symptomatic vines.
Field-observations during a 3-year period in a cv. Pinot levels; uneven virus distribution across plant tissues. More-
gris vineyard indicated a progressive increase of symptom- over, as the virus was already discovered in a range of white
atic vines (from 14.7 to 33.9%) while the incidence in a cv. and red-berry cultivars (Glasa et al., 2014), GPGV monitor-
Traminer vineyard was stable (around 3%) (Saldarelli ing should be extended to a greater number of asymptomatic
et al., 2013). GINV, a close relative of GPGV, is transmit- varieties in order to better understand its spread. Also GPGV
ted by erineum mites (Kunugi et al., 2000), but the means quantification in a larger number of vines could disclose a
of GPGV spread has not yet been ascertained. Although threshold effect for symptom expression.
GPGV was found in individuals of Colomerus vitis fed on
GPGV-infected vines, the results of transmission trials to
Acknowledgements
grapevine seedlings were unsuccessful (Beber et al., 2013).
Rootstocks can also play a significant role in the spread The authors thank the ERSA phytosanitary inspectors and
of GPGV: field-transplanted grafted-plants derived from technicians for sample collection: F. Bregant, A. De Biasio,
GPGV-negative screen-house clones were further analyzed G. Franco, A. Gallas, G. Gori, M. Mossenta and S. Saro.
and despite being asymptomatic they turned to be GPGV- The authors also thank the DOC agricultural technicians:
positive (data not shown). GPGV could then be graft- G. Bigot, M. Corbatto, F. Degano, G. Marchi, M. Masotti
transmitted or vector-borne. and D. Maurigh. The authors are very grateful to Dr. C.
Cattivello for statistical analysis.
Conclusions
sence du Grapevine Pinot gris virus (GPGV)
Pre
If GPGV is the etiologic agent of the new syndrome, it is
en Friuli Venezia Giulia (Italie). Suivi en plein
necessary to explain the virus presence in asymptomatic
champ et quantification du virus par la RT-PCR
vines. Several aspects should be considered in future studies:
en temps reel
virulence variability among different GPGV isolates; con-
temporary presence of other grapevine viruses that could Depuis 2003 la presence d’un nouveau syndrome
affect GPGV in syndrome development; different infection caracterise par des sympt^
omes de rabougrissement, des
ª 2015 The Authors. Journal compilation ª 2015 OEPP/EPPO, EPPO Bulletin 45, 22–32
32 G. L. Bianchi et al.
marbrures chlorotiques, des deformations foliaires, et une Кoличecтвeнныe aнaлизы виpycнoгo титpa пoкaзaли
reduction du rendement et de la qualite a ete signalee sur бoльшyю вapиaбeльнocть виpycнoгo кoнтeнтa кaк
des varietes a baies blanches de Vitis vinifera dans des cимптoмныx, тaк и бeccимптoмныx pacтeний, oднaкo
vignobles en Trentino-Alto Adige et Friuli Venezia Giulia. cpeднee кoличecтвo GPGV нa cимптoмныx лoзax былo
L’identification d’un nouveau virus, provisoirement appele знaчитeльнo бoльшим, чeм нa бeccимптoмныx
Grapevine Pinot gris virus (GPGV), dans une vigne de pacтeнияx.
cepage Pinot gris a suggere une association entre ce
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