Professional Documents
Culture Documents
Antibacterial agents are generally described as bacteristatic when, at usual dosages, they
prevent the active multiplication of bacteria, e.g. chloramphenicol, tetracycline, and
erythromycin. Antibacterial agents are described as bactericidal when, at usual dosages, they
kill bacteria, e.g. the penicillins, cephalosporins, glycopeptides and aminoglycosides. Some
bacteristatic agents become bactericidal when used at higher concentrations, e.g. erythromycin
and tetracycline.
Narrow spectrum antibiotics are those with activity against one or few types of bacteria,
e.g. Vancomycin against staphylococci and enterococci.
In theory it is always better to use narrow spectrum antibiotics once the infective agent is known
as this limits the detrimental effects on the normal bacterial flora.
Antimicrobial resistance
Most of the antimicrobial resistance which is now making it difficult to treat some infectious
diseases is due to the extensive use and misuse of antimicrobial drugs which have favoured the
emergence and survival of resistant strains of micro-organisms. Drug-resistant strains are
common among staphylococci, gonococci, meningococci, pneumococci, enterococci, Gram
negative bacteria (e.g.Salmonella, Shigella, Klebsiella, Pseudomonas) and M. tuberculosis.
Bacteria become resistant to antimicrobial agents by a number of mechanisms, the commonest
being:
- Lack of target of the antibiotic eg. Mycoplasmas do not have the cell wall, Chlamydia
lacks peptidoglycan
– Production of enzymes which destroy or chemically modify antibiotics, this include huge
numbers of beta-lactamases and various aminoglcosides modifying enzymes.
– Changes in the bacterial cell membrane, preventing the uptake of an
antimicrobial/antibiotic target may be inaccessible. Peptidoglycan in Gram negative is
inaccessible by penicillin since it cannot penetrate the cell membrane. Some bacteria have efflux
pump which can actively pump out antibiotics from the cell. Gram negative bacteria resist the
activity of tetracyclines by this mechanism.
– Modification of the target so that it no longer interacts with the antimicrobial. Quinolones
resistance is affected by point mutations in the DNA gyrase which prevents binding of the drug
to its target.
– development of metabolic pathways by bacteria which enable the site of antimicrobial
action to be bypassed.eg Methycillin resistance in methycillin resistant Staphylococcus aureus
results from the production of an additional penicillin binding protein called PBP2 which is not
accessible to inhibition by penicillins.
To acquire these new properties bacteria must undergo a genetic change. Such a genetic change
may occur by mutation or by the acquisition of new genetic material. New genetic material is
acquired by the transfer of resistance genes, (located on plasmids and transposons) from one
bacterium to another. Some plasmids encode for resistance to several antibiotics and can be
transferred between bacterial species, e.g. from Escherichia coli to Shigella dysenteriae.
Disc diffusion susceptibility tests: Disc diffusion techniques are used by most laboratories to test
routinely for antimicrobial susceptibility. A disc of blotting paper is impregnated with a known
volume and appropriate concentration of an antimicrobial, and this is placed on a plate of
susceptibility testing agar uniformly inoculated with the test organism. The antimicrobial
diffuses from the disc into the medium and the growth of the test organism is inhibited at a
distance from the disc that is related (among other factors) to the susceptibility of the organism.
Strains susceptible to the antimicrobial are inhibited at a distance from the disc whereas resistant
strains have smaller zones of inhibition or grow up to edge of the disc.
For clinical and surveillance purposes and to promote reproducibility and comparability of
results between laboratories, WHO recommends the National Committee for Clinical Laboratory
Standards (NCCLS) modified Kirby-Bauer diffusion technique.
Antimicrobial discs
The choice of antimicrobials to be included in susceptibility tests will depend on the pathogen,
the specimen, range of locally available antimicrobials, and local prescribing policies.
Consultation between laboratory, medical, and pharmacy staff is required. The range of first
choice drugs should be limited and reviewed at regular intervals. Additional drugs should be
included only by special request. Where there is cross-resistance, only one member from each
group of related antimicrobials need be selected.
An oxacillin disc is representative of the whole group of beta-lactamase resistant penicillins
when testing staphylococci.
Note: Paper antimicrobial discs are commercially available from most manufacturers of culture
media.
Proteus strains
Some Proteus strains may swarm into the area of inhibition but the actual zone of inhibition is
usually clearly outlined.
The test is performed by touching a colony of the test organism with a stick and when the
organism is beta-lactamase producing, the end of the stick turns pink-red within 15 minutes
(usually within a few minutes.
Staphylococcus aureus
Pathogenicity
S. aureus causes boils, styes, pustules, impetigo, infections of wounds (cross-infections), ulcers
and burns, osteomyelitis, mastitis, septicaemia, meningitis, pneumonia and pleural empyema.
Also, toxic food-poisoning (rapid onset, no fever), toxic shock syndrome and toxic skin
exfoliation. S. aureus is carried in the nose and on the skin of many healthy people. It is easily
spread in hospitals, particularly on surgical wards.
Extracellular enzymes and toxins produced by strains of S. aureus that contribute to its
invasiveness and pathogenicity
● Coagulase: Clots plasma, interferes with phagocytosis, facilitates spread in the tissues.
● Haemolysins: Lyze red cells.
● Leukocidin: Kills leucocytes.
● Fibrinolysin: Digests fibrin.
● Lipase: Breaks down fat.
● Hyaluronidase: Facilitates spread in tissues by destroying hyaluronic acid (component of
connective tissue).
● Protein A: Antiphagocytic (prevents complement activation).
Enterotoxins (heat stable): Cause food-poisoning (particularly vomiting).
● Toxic shock syndrome toxin-1: Shock, rash, desquamation of skin.
● Epidermolytic toxins A and B: Generalized peeling of the skin.
● Chemotaxis inhibitory protein: Inhibits migration and activation of neutrophils.
LABORATORY FEATURES
Specimens: Pus and swabs from infected sites, sputum, cerebrospinal fluid, blood for culture.
Faeces, vomit and the remains of food when food poisoning is suspected.
Morphology
Staphylococci are Gram positive cocci of uniform size, occurring characteristically in groups but
also singly and in pairs. They are non-motile and non capsulate.
Culture
Staphylococci grow well aerobically and in a carbon dioxide enriched atmosphere. Most strains
also grow anaerobically, but less well. Temperature range for growth is 10–42 ºC, with an
optimum of 35–37 ºC.
MacConkey agar: Smaller (0.1–0.5 mm) colonies are produced after overnight incubation at 35–
37 ºC. Most strains are lactose fermenting.
Mannitol salt agar: A useful selective medium for recovering S. aureus from faecal specimens
when investigating staphylococcal food-poisoning. It can also be used to screen for nasal
carriers. S.aureus ferments mannitol and is able to grow on agar containing 70–100 g/l sodium
chloride. Mannitol salt agar containing 75 g/l sodium chloride (plus 4 mg/l methicillin) is
recommended, particularly for isolating MRSA strains.
Biochemical tests
S. aureus is:
● Coagulase positive
● DNA-ase positive
● Catalase positive
Antimicrobial susceptibility
MRSA (methicillin resistant S. aureus): These strains are resistant to methicillin and related
penicillins and are particularly difficult to treat because they are also resistant to most other
common antibiotics. Vancomycin is often needed to treat MRSA infections. Cultures are usually
a mixture of sensitive and resistant organisms. MRSA strains cause hospital-acquired infections,
particularly wound infections and septicaemia. Improved control measures and surveillance are
required to combat increases in the isolation rates of multi-drug resistant MRSA in hospital
environments.
These organisms are broadly classified by their haemolytic activity on blood agar (alpha, beta,
non-haemolytic) and in the case of beta haemolytic streptococci, and enterococci, by Lancefield
group antigens in their cell wall (envelope). Streptococci, formerly classified as Group D
streptococci, are now included in the genus Enterococcus e.g. S. faecalis has been reclassified E.
faecalis.
Lancefield grouping is a system of classification of catalase negative Gram positive cocci based
on the carbohydrate composition of bacteria antigen found on the cell walls.
Group A- rhamnose-N-acetylglucosamine
Group B- rhamnose - glucosamine polysaccharide
Group C –rhamnose – N-acetylgalactosamine
Group D – glycerol teichoic acid containing D-alanine and glucose
Group F- glucopyrasonyl-N-acetylgalactosamine
Streptococcus pyogenes
Pathogenicity
S. pyogenes (Lancefield Group A) causes sore throat (tonsillitis, pharyngitis), peritonsillar
abscess (quinsy), scarlet fever, otitis media, cellulitis, impetigo, necrotizing fasciitis, erysipelas,
puerperal sepsis, septicaemia, and occasionally toxic shock syndrome.
Also immune-mediated post-streptococcal rheumatic fever (following throat infections) and
glomerulonephritis (after skin or throat infections).
In developing countries, rheumatic heart disease is an important cause of death among school-
age children.
Note: S. pyogenes can be found as a commensal in the upper respiratory tract, particularly of
children.
Extracellular enzymes and toxins produced by strains of S. pyogenes that contribute to its
invasiveness and pathogenicity
● Streptolysins (toxins that haemolyze red cells):
– Streptolysin S that is active aerobically (beta-haemolysis on blood agar). It is non-antigenic.
– Streptolysin O that haemolyzes red cells under anaerobic conditions, e.g. sub-surface agar
stabs. It is antigenic, stimulating the production of antistreptolysin O antibody (ASO)
● Streptokinase, a protease that lyzes fibrin.
● Hyaluronidase: Facilitates spread in the tissues by destroying hyaluronic acid. Streptococcal
hyaluronidase is antigenic (antibody formed after infection).
● Leukocidin: Destroys leucocytes.
● Lipoteichoic acid: Facilitates adherence to pharyngeal epithelial cells.
● M-proteins (antigens): Anti-phagocytic virulence factors (different for different strains).
Antibodies to M antigens are protective. Selected M serotypes appear to be associated with
rheumatic fever, acute glomerulonephritis, and severe S. pyogenes infections.
● NADase (nicotinamide adenine dinucleotidase): Kills leukocytes. Antibody formed after
infection.
● DNA-ases (deoxyribonuclease) A, B, C, D that break down DNA and stimulate an antibody
response, particularly against DNA-ase B. Anti-DNA-ase B tests are available.
● Erythrogenic toxin: Responsible for the rash seen in scarlet fever and is also associated with
streptococcal toxic shock syndrome. It is produced as a result of a lysogenic phage present in the
streptococci.
LABORATORY FEATURES
Specimens: Include a throat swab (avoiding saliva contamination) or swabs of pus and serous
fluid depending on the site of infection, and blood for culture. Culture media should be
inoculated as soon as possible or a swab placed in a tube of silica gel. Testing for ASO antibody
in serum is helpful in diagnosing rheumatic fever.
Morphology
Streptococci are Gram positive cocci, occurring characteristically in short chains, but also in
pairs and singly. Long chains are formed in fluid cultures. The organisms are non-motile. Some
strains are capsulated.
Culture
Blood agar: S. pyogenes produces beta haemolytic colonies, i.e. the colonies are surrounded by a
zone of complete haemolysis with decolorization of the haemoglobin. Colonies are usually small
(0.5–1 mm), colourless, dry, shiny or mucoid. Haemolysis is more marked under anaerobic
conditions as seen in colonies growing below the agar surface.
Choice of blood
To isolate beta-haemolytic streptococci, use sheep blood (1st choice), horse, rabbit or goat blood
to prepare blood agar plates. Do not use human blood because this may contain unwanted
substances such as citrate (e.g.donor blood), antibiotics, or antibodies such as ASO or anti-M
protein that could interfere with the growth or haemolytic activity of S. pyogenes.
Note: Other beta-haemolytic streptococci (belonging to other Lancefield groups) also produce
colonies similar to S. pyogenes. Betahaemolysis may also be seen with some strains of S. aureus,
Haemophilus (particularly from throat swabs), Corynebacterium and Moraxella.
It is therefore important to examine a Gram stained smear of the culture. A catalase test can be
used to differentiate streptococci (negative) from staphylococci (positive). When grown on
Columbia blood agar, some alpha-haemolytic streptococci may show beta-haemolysis.
Sensitivity to bacitracin
Adding a bacitracin disc (0.04 or 0.05 IU, not higher), to a plate of blood agar or preferably a
selective medium, is a useful method of screening for S. pyogenes. Most strains are sensitive to
bacitracin , but it is not possible to rely completely on sensitivity to bacitracin to identify S.
pyogenes. Other non-Group A beta-haemolytic streptococci (e.g. Groups B, C and G) may
occasionally also show sensitivity to bacitracin.
Serological grouping is required. Performing a PYR test is a further way of establishing a
presumptive diagnosis of S. pyogenes when the reagents for serogrouping are not available.
Note: S. pyogenes is always sensitive to benzylpenicillin and therefore placing a 1 ug disc of the
antibiotic on a primary culture plate (well area) can also help to presumptively identify S.
pyogenes.
Biochemical tests
S. pyogenes is:
● Catalase negative (staphylococci are positive)
● PYR positive*
*PYR (pyrrolidonyl) test: This detects pyrrolidonyl peptidase enzyme activity. Besides S.
pyogenes, Enterococcus species and occasionally streptococci belonging to groups C and G are
also PYR positive.
The test can be rapidly and simply performed using PYR impregnated strips (available from
several supproduce pliers including Mast Group and Oxoid), or less expensively by using a
Rosco pyrrolidonyl tablet test (code 47011).
Lancefield grouping
S. pyogenes belongs to Lancefield Group A. Pure growth beta-haemolytic colonies (confirmed
catalase negative, Gram positive streptococci) are grouped using specific Group A antiserum to
identify the A antigen extracted from the cell wall of the bacteria. Most laboratories use a rapid
agglutination test (coagglutination or latex) to Lancefield group beta haemolytic streptococci.
Tests which use an enzyme reagent to extract the antigen appear to be more sensitive and easier
to read than those which use acid extraction. The manufacturer’s instructions must be followed
exactly, particularly as regards the density of the bacterial suspension and controls to include.
Positive group A test: Indicates that the organism is S. pyogenes (particularly when bacitracin
sensitive and PYR positive) but possession of A antigen is not species specific. Very
occasionally other beta haemolytic streptococci group as A.
Antimicrobial susceptibility
S. pyogenes strains are susceptible to penicillin. Erythromycin is usually used to treat patients
hypersensitive to penicillin but resistance to erythromycin (and also to tetracyclines) is being
increasingly reported.
Streptococcus agalactiae
Pathogenicity
S. agalactiae (Lancefield Group B) causes septic abortion and puerperal or gynaecological
sepsis, and occasionally urinary tract infection. S. agalactiae forms part of the normal microbial
flora of the female genital tract. Occasionally it causes neonatal septicaemia and meningitis (rare
in most developing countries).
In cattle, S. agalactiae is a common cause of bovine mastitis. Human strains are distinct from
animal strains.
LABORATORY FEATURES
Specimens: Include cerebrospinal fluid, ear swab, and blood for culture from neonates. High
vaginal swab is required from women with suspected sepsis.
Morphology
Group B streptococci are Gram positive cocci, occurring characteristically in short chains but
also in pairs and singly. The organisms are non-motile. Most strains are capsulated.
Lancefield grouping
Note: When reagents for streptococcal grouping are not available, S. agalactiae can be identified
presumptively by the CAMP test and hippurate hydrolysis test.
Culture
Blood agar: Most strains of S. agalactiae produce grey mucoid colonies about 2 mm in diameter,
surrounded by a small zone of betahaemolysis (clear area with decolorization of haemoglobin).
About 5% of strains are nonhaemolytic.
Placing discs of penicillin and gentamicin on the plate can help to identify these strains
(penicillin sensitive, gentamicin resistant).
Neomycin blood agar: A useful selective medium for isolating S. agalactiae from urogenital
specimens.
Orange pigment: Produced by S. agalactiae when cultured on serum starch agar anaerobically.
Bile aesculin stope: S. agalactiae does not hydrolyse aesculin. It is able to grow on bile agar.
Group A Streptococcus pyogenes gives a variable aesculin hydrolysis reaction and does not grow
on bile agar. Group D streptococci hydrolyse aesculin and can grow on bile agar.