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JOURNAL OF CLINICAL MICROBIOLOGY, Dec. 2009, p. 4084–4089 Vol. 47, No.

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0095-1137/09/$12.00 doi:10.1128/JCM.01395-09
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Nonrandom Distribution of Pseudomonas aeruginosa and


Staphylococcus aureus in Chronic Wounds䌤
Mustafa Fazli,1 Thomas Bjarnsholt,1 Klaus Kirketerp-Møller,2 Bo Jørgensen,2
Anders Schou Andersen,2,3 Karen A. Krogfelt,3 Michael Givskov,1
and Tim Tolker-Nielsen1*
Department of International Health, Immunology, and Microbiology, Faculty of Health Sciences, University of Copenhagen,
Copenhagen, Denmark1; Copenhagen Wound Healing Center, Bispebjerg Hospital, Copenhagen, Denmark2; and
Statens Serum Institut, ABMP, Copenhagen, Denmark3
Received 17 July 2009/Returned for modification 24 August 2009/Accepted 30 September 2009

The spatial organization of Pseudomonas aeruginosa and Staphylococcus aureus in chronic wounds was
investigated in the present study. Wound biopsy specimens were obtained from patients diagnosed as
having chronic venous leg ulcers, and bacterial aggregates in these wounds were detected and located by
the use of peptide nucleic acid-based fluorescence in situ hybridization and confocal laser scanning
microscopy (CLSM). We acquired CLSM images of multiple regions in multiple sections cut from five
wounds containing P. aeruginosa and five wounds containing S. aureus and measured the distance of the
bacterial aggregates to the wound surface. The distance of the P. aeruginosa aggregates to the wound
surface was significantly greater than that of the S. aureus aggregates, suggesting that the distribution of
the bacteria in the chronic wounds was nonrandom. The results are discussed in relation to our recent
finding that swab culturing techniques may underestimate the presence of P. aeruginosa in chronic wounds
and in relation to the hypothesis that P. aeruginosa bacteria located in the deeper regions of chronic
wounds may play an important role in keeping the wounds arrested in a stage dominated by inflammatory
processes.

Chronic wounds, such as diabetic foot ulcers, pressure faecalis (71.7%), Pseudomonas aeruginosa (52.2%), coagu-
ulcers, and venous leg ulcers, are an increasing problem lase-negative staphylococci (45.7%), Proteus species
worldwide. One to 2% of the population in developed coun- (41.3%), and anaerobic bacteria (39.1%) (12). S. aureus and
tries develops chronic wounds, a condition associated with P. aeruginosa are opportunistic pathogenic bacteria and are
severe patient suffering, the loss of employment, a reduced widely known to cause chronic biofilm-based infections in
quality of life, and high costs to the health care system (13). their hosts. S. aureus is most commonly isolated from
Detailed knowledge about chronic wounds is required in chronic wounds (8, 12, 15, 17) and, in certain situations, can

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order to develop better wound treatment and management express a number of potential virulence factors and surface
strategies. proteins which promote its adherence to the damaged tissue
A normal wound healing process involves four main phases: and decrease neutrophil functions and immune responses of
(i) coagulation, (ii) inflammation, (iii) cell proliferation and the host (10, 11). P. aeruginosa often causes biofilm-based
repair of the matrix, and (iv) epithelialization and remodeling chronic infections and expresses virulence factors, in partic-
of the scar tissue (23). However, chronic wounds are believed ular, rhamnolipid, that can eliminate the activity of PMNs
to be captured in the inflammatory phase, where persistent (4, 16). A number of studies have demonstrated that P.
influx and elevated activity of polymorphonuclear neutrophils aeruginosa is frequently present in chronic wounds (12, 17)
(PMNs) occur (1). Although PMNs play a critical role in the and have provided evidence that the bacteria are located in
host defense and wound healing, they release cytolytic en- aggregates enclosed in extracellular polymeric matrix mate-
zymes, free oxygen radicals, inflammatory mediators, and ma- rial as found in biofilms (17). Furthermore, chronic wounds
trix metalloproteases, which cause local tissue damage in the that harbored P. aeruginosa were larger than those that did
host (22, 23, 26). not, and the healing process also seemed to be more se-
It is known that the microflora of chronic wounds com- verely hindered for those wounds (12, 14, 20).
prises multiple species. In a bacterial profiling study, Gjøds- Biofilms are bacterial aggregates enclosed in a self-produced
bol et al. found that chronic venous leg ulcers harbored extracellular polymeric matrix (6, 21, 25). In clinical environ-
Staphylococcus aureus (in 93.5% of the ulcers), Enterococcus ments biofilms can form on dead or living tissues, mucosal
surfaces, or the surfaces of medical devices in the host. The
bacteria in biofilms often display characteristics different from
* Corresponding author. Mailing address: Department of Inter- those of their planktonic counterparts, such as increased resis-
national Health, Immunology and Microbiology, Faculty of Health tance to the activities of the host immune system and tolerance
Sciences, University of Copenhagen, Blegdamsvej 3B, Copenhagen N
DK-2200, Denmark. Phone: 45 353 26656. Fax: 45 353 27853. E-mail:
to antimicrobial treatments (7). Such characteristics are im-
ttn@sund.ku.dk. portant, since biofilms are involved in many chronic bacterial

Published ahead of print on 7 October 2009. infections. Recent studies have shown the presence of bacterial

4084
VOL. 47, 2009 P. AERUGINOSA AND S. AUREUS IN CHRONIC WOUNDS 4085

in 99.9% ethanol (total, 6 min), twice in 96% ethanol (total, 6 min), and three
times in distilled sterile water (total, 9 min).
PNA-FISH and conventional tissue staining. The deparaffinized tissue sec-
tions were analyzed by means of conventional hematoxylin and eosin (H&E)
staining and FISH with PNA probes. The PNA probe in hybridization solution
(AdvanDx, Inc., Woburn, MA) was added dropwise to each tissue section, which
was then covered with a coverslip and hybridized in a PNA-FISH workstation
(AdvanDx, Inc.), which was covered with a lid, at 55°C for 90 min. Three separate
PNA probe solutions were used: (i) a Texas Red (TxR)-labeled P. aeruginosa-
specific probe, (ii) a fluorescein isothiocyanate (FITC)-labeled S. aureus-specific
probe, and (iii) a mixture of the TxR-labeled P. aeruginosa-specific probe and the
FITC-labeled S. aureus-specific probe. The slides with tissue sections were
washed in a wash solution (AdvanDx, Inc.) at 55°C for 30 min, air dried, mounted
with Vectashield mounting medium with 4⬘,6⬘-diamidino-2-phenylindole (DAPI;
Vector Laboratories), and covered with a coverslip. The tissue sections were
examined as described below.
Image acquisition and analysis. Microscopic observations of the tissue sec-
FIG. 1. Sampling region on a chronic venous leg ulcer. Biopsy tions were performed with an epifluorescence microscope (Olympus, Hamburg,
specimens were taken from a central region within the wounds. The Germany) or a TCS-SP5 confocal laser scanning microscope (Leica Microsys-
arrows point to a representative sampling region. tems, Mannheim, Germany) equipped with an argon laser and a helium-neon
laser for excitation of the fluorophores. Multichannel simulated fluorescence
projection images were generated by using the IMARIS software package (Bit-
plane AG, Zurich, Switzerland) and were further processed for display by using
biofilms in chronic wounds (9, 15, 17). Although the role of PhotoShop software (Adobe). Subtraction of the background from the images
was performed with the IMARIS software package to remove the host tissue
biofilms in chronic wounds is not yet fully understood, it is
autofluorescence. The images were converted to eight-bit gray-scale images by
believed that their existence may be one of the reasons for using ImageJ (version 1.41o) software (http://rsb.info.nih.gov/ij/index.html), and
impaired wound healing (4, 16). the moment calculator tool (http://rsb.info.nih.gov/ij/plugins/moments.html) of
We previously demonstrated that there is a lack of correla- the same software was used to locate the center of mass of the bacterial popu-
tion between the bacteria detected by standard culturing and lation displayed on the images.
Statistical evaluation. To evaluate whether the data obtained from the dis-
those detected directly by peptide nucleic acid (PNA)-based tance measurement of P. aeruginosa and S. aureus aggregates to the wound
fluorescence in situ hybridization (FISH) in chronic wound surface were statistically significant, an unpaired t test was performed. P values
samples (17). While S. aureus was detected more frequently of ⱕ0.05 were considered significant. The statistical program Stat-View (SAS
by swab sample cultivation than by PNA-FISH, the opposite Institute Inc., Cary, NC) was used to calculate P values.
was true for P. aeruginosa. This lack of correlation between
detection by swab sample cultivation and PNA-FISH may be
RESULTS
due to the ability of the different bacterial species to colo-
nize different regions of chronic wounds. Swab sample cul- Initially, we identified P. aeruginosa and S. aureus in biopsy
tivation identifies the microorganisms present in the surface material from chronic wounds by the use of PNA-FISH with
region of the wound but may not detect microorganisms species-specific probes. On the basis of those identities, we
located inside the wound bed. Accordingly, in the present selected five wounds containing P. aeruginosa and five wounds

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report, we present evidence that S. aureus primarily colo- containing S. aureus (one of the wounds selected contained
nizes the region of chronic wounds which is close to the both P. aeruginosa and S. aureus). In order to study the spatial
surface, whereas P. aeruginosa primarily colonizes the distribution of P. aeruginosa and S. aureus in these wounds, we
deeper regions of chronic wounds. The ability of P. aerugi- cut five sections sagittally at 50-␮m intervals from each wound
nosa to colonize the deeper regions of chronic wounds may biopsy specimen and performed PNA-FISH of these sections
be due to the ability of this organism to produce virulence with P. aeruginosa- and S. aureus-specific probes. We subse-
factors which destroy PMNs (4, 16), and it may play an quently acquired images at three different regions on each
important role in keeping the wounds arrested in a stage section by confocal laser scanning microscopy (CLSM). The
dominated by inflammatory processes. bacteria were predominantly present as large aggregates. To
get a measure of the distance of the bacteria to the wound
MATERIALS AND METHODS
surface, we located the center of mass of the bacterial aggre-
gates identified on each image by using the moment calculator
Tissue sample collection and preparation. Nine patients diagnosed with
chronic venous leg ulcers were included in the study. As described below, four
tool of ImageJ software and measured its distance to the
patients had S. aureus-containing wounds, four patients had P. aeruginosa-con- wound surface. This analysis showed that the S. aureus aggre-
taining wounds, and one patient had a wound that contained both S. aureus and gates were located close to the wound surface, whereas the P.
P. aeruginosa. Material (4-mm punch biopsy specimens) from chronic venous leg aeruginosa aggregates were located deeper in the wound bed
ulcers (Fig. 1) was obtained with the acceptance of the patients and in accor-
(P ⬍ 0.0001) (Table 1). The centers of mass of the S. aureus
dance with biomedical project protocols H-B-2008-023 and KA-20051011, which
were approved by the Danish Scientific Ethical Board. Wound biopsy material aggregates were primarily located at a distance of 20 to 30 ␮m
was collected by a surgical team before cleansing and surgical preparation of the to the wound surface, whereas the centers of mass of the P.
wound (2). The material was immediately transferred to phosphate-buffered aeruginosa aggregates were primarily located at a distance of
saline with 4% paraformaldehyde and stored at 5°C before further preparation 50 to 60 ␮m to the wound surface (Fig. 2). Figure 3 shows
for microscopic investigation. The biopsy material for microscopic investigation
was embedded in paraffin, cut into 4-␮m sagittal sections, and mounted on glass
representative CLSM images of the locations of P. aeruginosa
slides. Prior to microscopic investigation, the paraffin was removed from the and S. aureus in the chronic wounds. The range of the distri-
tissue sections by immersing the glass slides twice in xylene (total, 10 min), twice bution of P. aeruginosa and S. aureus was limited, so colocal-
4086 FAZLI ET AL. J. CLIN. MICROBIOL.

TABLE 1. Average distance of bacterial aggregates to the surface can in some cases effectively control superficial bacterial bur-
of wound samples dens if the infection is localized but may not be appropriate for
Wound biopsy Bacterial species detected Avg distance to wound highly infected wounds. Systemic antibiotics may be effective in
specimen by PNA-FISH surface (␮m)b some cases of severe infection with tissue invasion (23). The
LGA02 S. aureus 28.3 (6.6) use of a nanocrystalline silver dressing was shown to decrease
BIJ04 S. aureus 8.8 (1.7) the superficial bacterial burden, as assessed by surface swab
HAH08 S. aureus 28.1 (5.0) investigation, but had no effect on the bacterial burden of the
M2a S. aureus 26.1 (5.1) deep wound compartment, as measured by tissue biopsy (24).
Pt17 S. aureus 23.7 (3.7)
M3a P. aeruginosa 57.5 (9.4)
Thus, it is of great importance to define the spatial organiza-
Pt11 P. aeruginosa 50.0 (13.4) tion of the bacterial species within a chronic wound for the
Pt20 P. aeruginosa 53.5 (9.9) most effective management of the infection. A relevant picture
Pt23B P. aeruginosa 68.7 (11.2) of the spatial organization of the bacteria in a chronic wound
Pt31 P. aeruginosa 46.1 (6.0) might be obtained by using molecular methods, such as dena-
a
Specimens M2 and M3 are biopsy specimens obtained from the same wound. turing gradient gel electrophoresis (2, 8) and FISH (16), in
Both S. aureus and P. aeruginosa were detected in these biopsy specimens. In the combination with traditional culturing of swab as well as biopsy
case of specimen M2, the distance of S. aureus to the wound surface was ana-
lyzed, whereas in the case of specimen M3, the distance of P. aeruginosa to the samples.
wound surface was analyzed. The biofilm mode of growth provides bacteria characteristics
b
The center of mass of the bacterial aggregates on each image was located,
and its distance to the wound surface was measured. The average distances of the
different from those of their planktonic counterparts, such as
center of mass to the wound surface were obtained from 15 images acquired for protection against the activities of the host immune system and
each wound sample. The values in parentheses are standard deviations. increased tolerance to antimicrobial treatments (7). P. aerugi-
nosa bacteria in biofilms express quorum-sensing-controlled
virulence factors that can kill or eliminate the activity of host
ization of the two bacterial species was rare. In order to visu- immune cells. It has been shown that rhamnolipid, a leukocidal
alize host cells and bacteria in the wound biopsy specimens, we toxin produced by P. aeruginosa, causes rapid necrosis of
performed combined PNA-FISH and DAPI staining as well as PMNs in vitro (16). Bjarnsholt and colleagues proposed that
H&E staining of the biopsy specimens from wounds containing rhamnolipid offers a protective shield against the activities of
P. aeruginosa or S. aureus. As shown in Fig. 4, the analyzed host immune cells and demonstrated that aggregates of P.
sections from wounds with P. aeruginosa had a higher number aeruginosa in chronic wounds were surrounded by host cells,
of PMNs than the sections from wounds with S. aureus, sug- possibly PMNs, but were not penetrated (5, 17), similar to what
gesting that wounds infected with P. aeruginosa may have a was observed in in vitro biofilms of P. aeruginosa overlaid with
higher degree of inflammation than wounds infected with S. freshly isolated PMNs (4). The bacteria in chronic wounds are
aureus. expected to compete with each other for the available nutri-
ents. The ability of P. aeruginosa to migrate via type IV pili and
DISCUSSION flagellum-mediated motility in biofilms (3, 18, 19) and to pro-
duce virulence factors that can eliminate the activity of host
Although the microflora of chronic wounds is polymicrobial defense systems (4, 16) may explain the presence of these

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and heterogeneous, S. aureus and P. aeruginosa are among the bacteria in the deeper regions of chronic wounds. The destruc-
bacteria that are most frequently isolated from these wounds tion of PMNs by virulence factors produced by P. aeruginosa
(8, 12, 15). In the present study, we characterized the distribu-
tion of P. aeruginosa and S. aureus in nine chronic wounds: four
wounds with S. aureus, four wounds with P. aeruginosa, and one
wound with both S. aureus and P. aeruginosa. Analysis of the
images obtained by PNA-FISH and CLSM indicated that P.
aeruginosa was located significantly deeper in the wound bed
than S. aureus.
We previously investigated samples from 22 chronic venous
leg ulcers for the presence of bacteria by standard culturing
and PNA-FISH (17). By swab sample cultivation, we found
that 12 of the wounds were colonized with S. aureus, whereas
5 of them were colonized with P. aeruginosa. Conversely, by
using PNA-FISH, P. aeruginosa was detected in nine of the
wounds, while S. aureus was detected in only two of them. Our
present finding that P. aeruginosa is located in the deeper
regions of the wound bed offers an explanation for the different
results obtained by swab sample cultivation and PNA-FISH.
Because the swab sample culture technique detects bacteria in
the upper region of the wounds, bacteria that primarily colo-
FIG. 2. Distribution of the distances from the wound surface to the
nize the deeper regions may not be detected. center of mass of S. aureus aggregates (light gray shading) or P. aerugi-
For a good healing response, the bacterial load of chronic nosa aggregates (dark gray shading). The distances are average values
wounds needs to be optimally managed. Topical antimicrobials obtained from the analysis of 15 images for each wound sample.
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FIG. 3. Representative CLSM images of S. aureus (A and B), P. aeruginosa (C and D), and both organisms (E) in chronic wounds. The bacteria
were detected by PNA-FISH with an FITC-labeled S. aureus-specific probe (green) or a TxR-labeled P. aeruginosa-specific probe (red), or a
mixture of the two probes. Arrows point to the wound surfaces. Bars, 30 ␮m.

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4088 FAZLI ET AL. J. CLIN. MICROBIOL.

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FIG. 4. Epifluorescence micrographs (A and B) and bright-field micrographs (C and D) showing red PNA-FISH-stained P. aeruginosa cells (A),
green PNA-FISH-stained S. aureus cells (B), blue DAPI-stained host cells (A and B), H&E-stained host cells and P. aeruginosa cells (C), and
H&E-stained host cells and S. aureus cells (D). Some of the bacteria and host cells are encircled and labeled b and h, respectively. Arrows point
to the wound surfaces. Bars, 35 ␮m.

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