Dragon Ball Z 

Movie 4: Lord Slug

 Lord Slug wishes for his youth to be restored.

The Four-Star Dragon Ball, found by Goten

Dragon Ball Z Movie 10: Broly - Second Coming
 Goten wishes that his father were there, and an image of Goku appears; though this creates
an interesting plot hole. First, Shenron does not appear when Goten tries to summon him;
second the sky is not even dark when the wish is made. Also at this point, Dende had powered
up Shenron to grant three wishes, though when the Dragon Balls read Goten thoughts about
wishing Goku was there to help them, the Dragon Balls still scatter at the end of the movie.
Dragon Ball Z Movie 12: Fusion Reborn
 Gohan wishes to close the border between the living and dead but Shenron is unable to grant
the wish, exceeding his own power. No other wish is made, leading to a somewhat comedic
ending, with Shenron saying "Is somebody going to make a wish or what?"
Dragon Ball Z Movie 13: Wrath of the Dragon
 Hoi wishes to unlock a box he found. (Tapion was in it).
 As they say their goodbyes to Tapion, Goku and friends mention that they will summon the
dragon again to wish all the people back to life who died during the battle
against Hirudegarn (this part of the conversation is mentioned in the Japanese version).
Dragon Ball Z Movie 14: Battle of Gods
 The Pilaf Gang wished for their youth prior to the events of the movie.
 Beerus demands Shenron to tell the Saiyans how to make a Super Saiyan God, allowing the
Saiyans to learn how the form is attained, ultimately leading to Goku achieving the form.
Dragon Ball Z Movie 15: Resurrection ‘F’
 Frieza Force's Sorbet and his body guard, Tagoma, wish to revive the galactic tyrant Frieza so
he can restore the Frieza Force's evil empire, the single most evil wish ever made with the
Earth's Dragon Balls. Frieza is revived as he was just before his death via the finishing blast
of Future Trunks' Shining Sword Attack, as Mecha Frieza and in pieces. Sorbet and Tagoma
collect all of the pieces of Frieza and put the organic parts in a healing chamber; Frieza's body
is regenerated and he reverts himself back into his first form, thus setting in motion the events
of the film.
 Shu wishes for one million zeni.
 Bulma says she'll gather the Dragon Balls to revive North City since Frieza destroyed it.
Dragon Ball Super Movie 1: Broly
 Cheelai wishes for Broly to be saved and sent back to Planet Vampa.
Dragon Ball Xenoverse series
Dragon Ball Xenoverse
 In Age 850, Xeno Trunks uses the Dragon Balls of Toki Toki City to summon a warrior who
could defend history (the customizable main protagonist of Xenoverse). This warrior later
defeats the Demon God Demigra and becomes the Hero of Toki Toki City.
 In Age 778, Demigra uses the Earth's Dragon Balls to revive Frieza, Cell, and Kid Buu in order
to use his Dark Magic to possess and control them creating The Bosses.
 Chronoa uses Toki Toki City's set of Dragon Balls (as Dende had created multiple sets by Age
850) to summon Shenron and wishes that Goku be informed of the threat posed by Demigra
and revived Bosses in Age 778.
Dragon Ball Xenoverse 2
 In the altered timeline of Age 779, Cooler is revived after his brother Frieza using the Dragon
Balls second wish. This allows him to partake in Frieza's revenge after having been rebuilt as
Metal Cooler.
 In an altered timeline of Age 850, Towa kills Shenron to stop Xeno Trunks from making his
wish but she is thwarted by the 2nd Future Warrior, allowing Xeno Trunks to make the wish,
restoring the Toki Toki Hero's existence.
 After the defeat of Final form Mira and the return of Tokitoki's Egg, at the insistence of Tokitoki
and Beerus, Chronoa uses Conton City's set of Dragon Balls (the same ones she used
in Xenoverse) to summon Shenron and wishes for a feast that will leave everyone satisfied.
After the feast, Chronoa explains that the food came from Earth as the Dragon Balls were
created by Dende and she reveals that he created several sets of Dragon Balls.