Scribd Logo
Upload

Welcome to Scribd!

  • Density Based

    Uploaded by

    mohamed mohsen
    9 views2 pages
    The document describes using density-based clustering to analyze data from an excel file. It loads necessary libraries, reads in the data file and selects two columns for analysis. Density-based spatial clustering of applications with noise (DBSCAN) is applied to cluster the data with a radius of 11 and minimum points of 3. The results are then plotted to visualize the identified clusters and any outliers. Code is provided to consolidate the steps into a single analysis.

    Original Description:

    Copyright

    © © All Rights Reserved

    Available Formats

    PDF, TXT or read online from Scribd

    Did you find this document useful?

    Is this content inappropriate?

    Report this Document
    The document describes using density-based clustering to analyze data from an excel file. It loads necessary libraries, reads in the data file and selects two columns for analysis. Density-based spatial clustering of applications with noise (DBSCAN) is applied to cluster the data with a radius of 11 and minimum points of 3. The results are then plotted to visualize the identified clusters and any outliers. Code is provided to consolidate the steps into a single analysis.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    9 views2 pages

    Density Based

    Uploaded by

    mohamed mohsen
    The document describes using density-based clustering to analyze data from an excel file. It loads necessary libraries, reads in the data file and selects two columns for analysis. Density-based spatial clustering of applications with noise (DBSCAN) is applied to cluster the data with a radius of 11 and minimum points of 3. The results are then plotted to visualize the identified clusters and any outliers. Code is provided to consolidate the steps into a single analysis.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    of 2

    Density Based:

    1. install and call need libraries:


    library("readxl")
    library("fpc")
    library("factoextra")
    library(ggpubr)
    2. read data from data1.xlsx file, then select columns 2,3:
    my_data <- read_excel(file.choose()) #Read excel file and choose its location
    dataFrame <- as.data.frame(my_data[2:3],col.names = c("times ", "accel")) #Picking desired columns to cluster into a data frame
    3. start Density Based method:
    db <- fpc::dbscan(dataFrame, eps = 11, MinPts = 3,) #Radius = 11 Min Points = 3
    4. Plot DBSCAN results
    plot(db, dataFrame, main = "DBSCAN", frame = FALSE) #Plot DBSCAN results
    Output:

    Another plot Better for visualizing clusters


    fviz_cluster(db, dataFrame,main = "Cluster plot", geom = c("point", "text"), pointsize = 3, ellipse.alpha = 0.15, outlier.color = "black",
    palette = "npg", outlier.shape = "X", outlier.pointsize = 4)
    Output:
    Consolidated code:
    #Package to read excel file
    install.packages("readxl")
    library("readxl")
    #Package to perform DBSCAN clustering algorithm
    install.packages("fpc")
    library("fpc")
    #Package to use cluster plot
    install.packages("factoextra")
    library("factoextra")
    library(ggpubr)

    #Read excel file and choose its location


    my_data <- read_excel(file.choose())

    #Picking desired columns to cluster into a data frame


    dataFrame <- as.data.frame(my_data[2:3],col.names = c("times ", "accel"))
    dataFrame

    #Radius = 11 Min Points = 3


    db <- fpc::dbscan(dataFrame, eps = 11, MinPts = 3,)
    db
    # Plot DBSCAN results
    plot(db, dataFrame, main = "DBSCAN", frame = FALSE)
    # Better for visualizing clusters
    fviz_cluster(db, dataFrame,main = "Cluster plot", geom = c("point", "text"),
    pointsize = 3, ellipse.alpha = 0.15, outlier.color = "black",
    palette = "npg", outlier.shape = "X", outlier.pointsize = 4)

    You might also like