Pocket Handling

 Most of the tools in the Proteins Plus service compute on the binding site of the protein-ligand
combination. A pocket definition feature has been implemented as a result. Automatic pocket
formation from ligands, individually chosen amino acids, or retrieval using DoGSiteScorer
calculations 

Data Handling

Keyword Search:-

 The entry point to the Proteins Plus service is frequently a publicly accessible structure from the
PDB whose PDB code is unknown to the user. To solve this problem, a keyword search was
combined with a limited number of quality criteria.
 A keyword search can be used to find structures based on several criteria, such as a protein or
author name, ligand id, or SMILES string. The examination provides a number of query types
that regulate the data fields taken into account. The 'Text Search' query type in Proteins Plus
searches every field in every item and can be further narrowed by additional keyword searches
in user-selected fields. To reorder the text, a 3D structure and a 2D ligand structure are
provided.

PyMol

 Warren Lyford DeLano created the open-source molecular visualisation programme PyMOL.
PyMOL has the ability to produce 3D images in high resolution of both biological
macromolecules like proteins and small chemicals. According to the original author, PyMOL
was used to create about 25% of all published images of 3D protein structures in the
academic literature by 2009. The word "Py" in the software's name indicates that it was
created using the Python programming language.