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Psychiatry Research
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Brief report
art ic l e i nf o a b s t r a c t
Article history: We investigated the association between ST8SIAII and schizophrenia in a sample of Spanish origin. We
Received 11 March 2013 found that the G allele (P ¼0.044) and the AG genotype (P ¼0.040) of rs3759916 were associated in
Received in revised form females. The ACAG haplotype (rs3759914, rs3759915, rs3759916 and rs2305561) was associated in males
30 July 2013
(P ¼0.028).
Accepted 2 September 2013
& 2013 Elsevier Ireland Ltd. All rights reserved.
Keywords:
Schizophrenia
Sex
ST8SIAII
2.2. Genotyping
n
Corresponding author at: Genetics Department, Faculty of Biological Sciences,
University of Valencia, Spain. Tel.: þ34 963543400; fax: þ34 963543029. Four SNPs located in the promoter (rs3759914, rs3759915 and rs3759916) and
E-mail address: dmolto@uv.es (M.D. Moltó). the coding (rs2305561) regions of ST8SIAII were analyzed. Genomic DNA was
0165-1781/$ - see front matter & 2013 Elsevier Ireland Ltd. All rights reserved.
http://dx.doi.org/10.1016/j.psychres.2013.09.001
1294 J. Gilabert-Juan et al. / Psychiatry Research 210 (2013) 1293–1295
isolated from the peripheral blood using the PUREGENEs DNA isolation kit (Gentra 3. Results
Systems, MN, USA). SNP genotyping was performed through the iPLEX assay on the
MassARRAY platform (Sequenom, Santiago de Compostela, Spain). Exclusion
criteria during quality control of the genotyping procedure were the following: No significant differences in the allelic or genotypic frequencies
(i) genotyping call rate lower than 99%; (ii) deviations from Hardy–Weinberg between cases and controls were detected. Sample grouped by sex
Equilibrium (HWE) in the control sample (P o 0.05). showed some positive results (Table 1). A significant association
between the G allele of rs3759916 and the disease in the female
sample was found (χ2 ¼6.514, P ¼0.011; corrected P ¼0.044).
2.3. Statistical analysis Among 132 control females none of them has this allele, while
nine of the 185 females with schizophrenia are G carriers. In the
For each demographic condition, mean 7SD was determined and the resulting male subgroup, a significant association was detected with the G
values were then subjected to unpaired Student's t test statistical analysis, using the allele of the rs2305561, but it did not overcome the multiple test
IBM SPSS statistics software (version 19). correction (χ2 ¼4.201, P ¼0.04; corrected P ¼0.16). Concerning the
QUANTO software v.1.2.4 (http://hydra.usc.edu/gxe/) was used to calculate the
genotypic analyses, the AG genotype of rs3759916 was associate to
statistical power of our sample. It was 54% to detect a risk allele over rare allele
frequencies (0.05–0.50) and assuming an odds ratio of 1.5 with 95% confidence the disease in female (χ2 ¼6.609, P ¼0.01; corrected P ¼0.04),
intervals. We also set the prevalence of schizophrenia at 1%. although this result should be treated with caution because is
The HWE of all the SNPs was assessed by applying a χ2 test implemented with based on small number of females. As can be seen in Table 1, there
SNPator software (http://www.snpator.org/). Differences in allelic and genotypic were no individuals with the GG genotype in our sample. In male,
frequencies between patients and controls were evaluated with a χ2 test via SNPator.
Pair-wise marker linkage disequilibrium (LD) was analyzed using the program
a positive association was observed with the GG genotype of
Haploview 4.1 (Barrett et al., 2005). It showed one Block (rs3759914, rs3759915 rs2305561, but it was not significant after Bonferroni correction
and rs3759916) with D′40.8 between markers. Haplotypes were constructed and (χ2 ¼3.966, P ¼0.046; corrected P ¼0.18).
their frequencies compared between cases and controls using the SNPator package. Haplotype was constructed with the four SNPs and no sig-
Haplotype frequencies were estimated through a retrospective likelihood algorithm.
nificant differences between cases and controls were found.
Bonferroni multiple test correction was applied at each level of analysis taking into
account the number of SNPs studied (in the allelic and genotypic analyses) or the However, the GCAG haplotype was associated to the disease in
number of haplotypes. females (Table 1), but it lost the statistical significance after
Table 1
Allelic, genotypic and haplotypic frequencies of the ST8SIAII polymorphisms grouped by sex.
Polymorphisms Allele counts (frequency) P value P valuea Genotype counts (frequency) P valueb P valuea
a
P value after Bonferroni correction.
b
Genotype P value with the dominant model of inheritance.
J. Gilabert-Juan et al. / Psychiatry Research 210 (2013) 1293–1295 1295
Bonferroni correction (χ2 ¼ 5.018, P ¼0.025; corrected P ¼0.15). In vulnerability to schizophrenia in males and females. Our study
males, the ACAG haplotype was associated with the disease showed interesting sex-specific associations between ST8SIAII and
retaining the significant association after multiple test corrections schizophrenia.
(χ2 ¼8.007, P¼ 0.0047, corrected P ¼0.028). Its frequency was
3.56% and 0.92% in cases and controls respectively (Table 1).
Acknowledgments