You are on page 1of 6

Infection, Genetics and Evolution 80 (2020) 104205

Contents lists available at ScienceDirect

Infection, Genetics and Evolution


journal homepage: www.elsevier.com/locate/meegid

Review article

Molecular epidemiology and evolution of Haemophilus influenzae T


a a b a,⁎ c,d,e,⁎,1
Shuxian Wen , Donghua Feng , Dingqiang Chen , Ling Yang , Zhenbo Xu
a
Department of Laboratory Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China
b
Department of Laboratory Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong, China
c
School of Food Science and Engineering, Guangdong Province Key Laboratory for Green Processing of Natural Products and Product Safety, South China University of
Technology, Guangzhou 510640, China
d
Department of Microbial Pathogenesis, University of Maryland, Baltimore 21201, USA
e
Overseas Expertise Introduction Center for Discipline Innovation of Food Nutrition and Human Health (111 Center), Guangzhou, China

A R T I C LE I N FO A B S T R A C T

Keywords: Haemophilus influenzae remains a common cause of illness in children worldwide. H. influenzae type b is the
Haemophilus influenzae leading cause of bacterial meningitis in children before introduction of vaccination and is a common cause of
Typing pneumonia, epiglottis and septic arthritis. Since the implementation of the Hib conjugate vaccine, the non-
Virulence typeable H. influenzae has rapidly decreased in respiratory and invasive infections in children and adults.
Resistance
However, the rate of antibiotic resistance of H. influenzae varies with region and period and is usually on the rise.
In this review, typing of H. influenzae, virulence factors and resistance will be dissertated.

1. Introduction 2. Typing of H. influenzae

Haemophilus influenzae is a pleomorphic Gram-negative coccoba- 2.1. Serologic capsule typing and molecular capsule typing
cillus which is responsible for a wide variety of airway mucosal infec-
tions and invasive diseases such as bacterial meningitis. The naso- Serologic capsule typing which is also called standard slide agglu-
pharyngeal carriage rate of H. influenzae was high in young children tination serotyping (SAST) is the traditional method to classify H. in-
and the notification rate was highest for patients < 1 month of age fluenzae into encapsulated and nonencapsulated. Strains may fail to
(Wang et al., 2008; Whittaker et al., 2017). H. influenzae can be dif- react with typing sera for inaccuracies in performing and interpreting
ferentiated into encapsulated (typable) and nonencapsulated (non- slide agglutination tests, capsule-deficient variants caused by partially
typeable) based upon the presence or absence of capsule. Encapsulated deletion of bexA and deletion of the entire capsule locus in a previously
H. influenzae (serotype a to f), especially the H. influenzae type b (Hib), serotypeable strain, which will misclassify encapsulated and none-
were used to be one of the most common causes of lower respiratory ncapsulated. To improve the accuracy of typing, molecular capsule
infection. Since the Hib conjugate vaccine was implemented, non- typing by PCR according to the three functionally defined regions of the
typeable H. influenzae (NTHi) has detected more frequently in re- capsule encoding gene cap locus is recommended. The cap locus is
spiratory tract infection and invasive infection in children and adults composed of three distinct regions, from I to III. Capsule common gene
for the rapid reduction of Hib infection. However, interest in H. influ- bexA in region I and capsule specific (types a to f) genes in region II of
enzae was also declined by the reduction of Hib infection, which has led the cap locus are used for molecular capsule typing by PCR (Kroll et al.,
to the underestimate of NTHi and other serotypes of H. influenzae. 1989; Satola et al., 2007; Davis et al., 2011). However, the method is
Antimicrobial resistance rate of H. influenzae is varied from areas and not that suitable for researches with a large number of isolates and may
periods, with an overall increased trend. In this review, molecular misclassify encapsulated and nonencapsulated for the deletions of bexA.
epidemiology and evolution of H. influenzae will be classified. Thus, a bexB-based method to differentiate true NTHi strains from
typeable strains was developed. Region I genes are present in all cap-
sular types and bexB in region I encodes protein in capsule exportation
is more reliable for the capsule typing than bexA because no bexB
partial deletions was reported yet (Davis et al., 2011). In addition, high


Corresponding authors at: Department of Laboratory Medicine, First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China.
E-mail addresses: jykresearch@126.com (L. Yang), zhenbo.xu@hotmail.com (Z. Xu).
1
Mailing address: School of Food Science and Engineering, South China University of Technology, Guangzhou 510,640, P.R. China.

https://doi.org/10.1016/j.meegid.2020.104205
Received 23 September 2019; Received in revised form 20 January 2020; Accepted 21 January 2020
Available online 22 January 2020
1567-1348/ © 2020 Elsevier B.V. All rights reserved.
S. Wen, et al. Infection, Genetics and Evolution 80 (2020) 104205

throughput hybridization-based methods is an attractive and efficient can be found in approximately 25% of the NTHi strains, which is a key
alternative for screening large numbers of H. influenzae strains. Un- factor in initial colonization of the nasopharynx. The analogue of Hia
fortunately, none of the available molecular typing methods can detect presenting in encapsulated H. influenzae is called Hif. Recent study
complete capsule deletions. claimed that, Hia expression may phase vary to escape the immune
response against NTHi. Variants with a low level of Hia may facilitate
2.2. Biotyping their escape from killing by anti-Hia antisera. In addition, HMW ad-
hesins are also phase-variably expressed (Atack et al., 2015).
H. influenzae can be defined into eight different biotypes (I-VIII)
according to the possible combinations of the presence or absence of 2.6. Biofilms
indole, urease and/or ornithine decarboxylase production (Schotte
et al., 2019). H. influenzae isolates of different biotypes occasionally Biofilms are communities of microorganisms attached to a surface.
associated with specific diseases has been reported and some serotype The formation of biofilms is influenced by bacteria pathogens self-fac-
strains were seem to related with distinct biotypes. For instance, the tors such as pili, protein, DNA, lipooligosaccharide, quorum sensing
majority of serotype b isolates are biotype I, especially those from in- system, and two-component signaling system (Murphy and Kirkham,
vasive disease (Kilian, 1976). 2002; Webster et al., 2006; Unal et al., 2012; Vogel et al., 2012). Bio-
films protect bacteria from environmental, host and chemical stressors,
2.3. Multilocus sequence typing (MLST) and may enhance tolerance to antimicrobial. There are several me-
chanisms explaining antimicrobial susceptibility affected by biofilms.
Multilocus sequence typing offers an unambiguous and precise Firstly, the glycocalyx excludes and/or influences the access of anti-
method for characterizing strains of bacterial pathogens by sequencing microbial agents to the underlying organisms. Secondly, the surface
internal fragments of seven housekeeping genes. There are great ad- regions of the glycocalyx and outlying cells react with the chemically
vantages of MLST comparing with other typing methods. Isolates reactive antimicrobial agents. Thirdly, limited availability of key nu-
characterized in different laboratories are comparable by MLST, and the trients within the biofilm forces a slowing of the specific growth rate
allelic profiles of strains and epidemiological information can be stored and lead to a dominance of relatively dormant cells at the base of the
in the database which is available on the Internet (Meats et al., 2003; biofilm. Finally, attachment to surfaces causes the cells to derepress/
Chen et al., 2018) (Table 1). induce genes associated with a sessile existence which may affect an-
timicrobial susceptibility (Brown and Gilbert, 1993; Reimche et al.,
2.4. Virulence factors of H. influenzae 2017). Biofilms formation bacteria such as H. influenzae are important
cause of otitis media in children and lower respiratory tract infection in
There are such a lot of virulence factors involve in the pathological adults with chronic obstructive pulmonary disease (COPD). Nontype-
process of H. influenzae infection. For instance, the capsule poly- able H. influenzae, is a common biofilms formation bacteria while it
saccharide protects H. influenzae from being attacked by leukocyte. The does not express a capsule, in addition, treatment failure caused by
pili promotes adhesion and participate in biofilm formation which is of biofilms formation NTHi has been reported (Brown and Gilbert, 1993;
great help for protection and antibiotic resistance. IgA proteases can Mohd-Zain et al., 2012). Along with the decline of Hib infections after
destroy the protection of mucosal barrier by IgA and cause mucosal introduction and coverage of the Hib conjugate vaccine, we should
bacterial pathogens infection. Macrophage survival factor is more attach importance to the control of NTHi dissemination, for it plays an
common seen in disease-related H. influenzae strains and may protects increasingly important role in H. influenzae infections.
H. influenzae from being phagocytosed and killed by macrophages.
Now, a detailed introduction will be followed. 2.7. IgA proteases

2.5. Capsule polysaccharide IgA proteases are produced by bacterial pathogens that colonize and
infect at human mucosal surfaces, including H. influenzae. IgA proteases
The capsule polysaccharide is a major virulence factor in the pa- can cleave the heavy chain of human IgA1 in the hinge region to de-
thogenesis of diseases caused by encapsulated bacteria pathogens. It is stroy the protection of mucosal barrier by IgA (Poulsen et al., 1992).
an important defense of outer environment for bacteria and may help Three types of IgA protease were discovered in H. influenzae, cleaving
against leukocyte phagocytosis. In addition, capsule promotes bacterial different site of the hinge region of human IgA1 and IgA proteases types
adherence and leads to infections. Six capsule types (a to f) have been are associated with the capsular serotype but not with the biotype of H.
reported in H. influenzae, and the capsule synthesis is encoded by capB influenzae. Serotypes a, b, d, and f secrete primarily type 1 protease,
genes in two copies in the chromosome. The loss of the capsule while serotypes c and e secrete only type 2 protease. NTHi yields one of
synthesis associated copy may lead to a capsule-deficient mutants the three protease types (Eton et al., 2017). IgA proteases may con-
(Meats et al., 2003; Kostyanev and Sechanova, 2012). In most of NTHi tribute to bacterial infection through mechanisms like stimulating
strains, adhesion to the host epithelial cells is mediated by two main production of proinflammatory cytokines, altering tumor necrosis
groups of adhesion proteins, HMW1/HMW2. HMW1 and HMW2 pro- factor α signaling, and mediating intracellular persistence (Lorenzen
teins are highly homologous glycoproteins presenting on the bacterial et al., 1999; Eton et al., 2017). In addition, IgA protease cleavage
surface and are encoded by loci hmw1 and hmw2 (Kostyanev and fragments in sputum samples from adults with COPD was identified,
Sechanova, 2012; Atack et al., 2015; Rempe et al., 2016). Hia adhesin providing direct evidence for existence of IgA proteases in the human

Table 1
Comparison of different typing methods.
Typing methods Advantage Shortcoming

Serologic capsule typing (SAST) Traditional and classic Poor accuracy


Molecular capsule typing Sensitive and specific than SAST Complicated operation and cannot detect complete capsule deletions
Biotyping Associated with specific diseases or serotype Low commonality
Multilocus sequence typing Precise, results are comparable and storable Complicated operation and high cost

2
S. Wen, et al. Infection, Genetics and Evolution 80 (2020) 104205

respiratory tract, which suggested that IgA proteases may be important the most virulent serotype (Peltola 2000). Along with the widely in-
virulence factors of mucosal bacterial pathogens such as H. influenzae troduction of Hib vaccination, the incidence of Hib infection has led to
(Murphy et al., 2015; Murphy 1999). great reduction with relative increase in occurrence of the other ser-
otypes and NTHi strains (Whittaker et al., 2017). Moreover, the in-
2.8. Macrophage survival factor vasive infections are more often attributed to unencapsulated strains
and a constant increase has seen in invasive NTHi worldwide (Schotte
There is a novel virulence factor called macrophage survival factor, et al., 2019; Van et al., 2014). In North America, the current epide-
msf, reported in H. influenzae. It belongs to the Sel1-like repeats (SLRs)- miological data suggest that invasive Hia disease predominantly affects
containing gene subfamilies, SlrVA, which has a significant association Indigenous communities. In addition, ST23 is responsible for most in-
with the disease isolates. SlrVA subfamily was encoded by slrV genes vasive disease in North America and is the predominant clone described
located at a common chromosomal locus (SlrV locus 1). The msf was on the H. influenzae MLST website (Tsang and Ulanova, 2017). While in
significantly higher among disease isolates than carriage isolates and Canada, for all invasive cases caused by H. influenzae, approximately
was confirmed important in in vitro macrophage uptake and survival. 54.6% isolates were NTHi during 2007 to 2014, far exceed the serotype
Strains lacking slrV gene can be quickly phagocytosed and killed by a (23.1%) and b (8.3%) (Tsang et al., 2017). Epidemiological in-
macrophages. Moreover, the msf was proposed to survive within human vestigations of invasive diseases in the post-conjugate vaccine era from
host cells and contributes to persistence and/or trafficking to new in- Europe and United States revealed that invasive H. influenzae disease is
fection sites of H. influenzae (Roop et al., 2016). predominantly caused by NTHi and serotype f (MacNeil et al., 2011;
Ladhani et al., 2012). In Asia, patients with H. influenzae associated
2.9. Epidemic characteristics of H. influenzae community-acquired respiratory infections caused by NTHi were as
high as 81% in China, during 2008 to 2009 (Qin et al., 2012). Biotype II
H. influenzae is associated with acute otitis media, sinusitis, pneu- which is more related to NTHi is seen more frequently than other
monia and invasive disease such as meningitis and septicemia. Children biotype now (Schotte et al., 2019). Obviously, NTHi has become an-
and elder people are more commonly affected by H. influenzae infec- other new burden in causing lower respiratory infection and invasive
tion, especially by Hib. In addition, pregnancy was associated with a diseases, highlighting the importance and emergency of investigating
greater risk of invasive H. influenzae infection (Collins et al., 2014). Hib the mechanisms of invasiveness in the absence of capsule.
infections was the leading cause of bacterial meningitis among pre-
school-aged children before the introduction of conjugate vaccines in 2.10. Resistance of beta-lactams in H. influenzae
the early 1900s (Adams et al., 1993).
In recent years, the incidences of invasive diseases caused by H. Infections caused by H. influenzae are usually treated with beta-
influenzae have been decreasing rapidly with the availability of the Hib lactam antimicrobial agents, Aminopenicillins and cephalosporins are
vaccination worldwide and the epidemiology of invasive H. influenzae the first choice for treatment of H. influenzae infections (Schotte et al.,
has changed (Adams et al., 1993; Marshall et al., 2014). The Hib con- 2019). Resistance mechanisms to beta-lactams in H. influenzae are in-
jugate vaccine was introduced to US since 1988 and was introduced to cluding enzymatic and nonenzymatic mechanism. The most common
Germany in 1990, followed by England in 1992 (Zielen et al., 1992; resistant mechanism to beta-lactams in H. influenzae is production of
Adams et al., 1993; Marshall et al., 2014). In 1993, the incidence of Hib beta-lactmases. The beta-lactamase producing H. influenzae was 15.0%
invasive infections among children aged < 5 years has declined by 97% overall but varied greatly by country, from < 5% in several countries to
from 1987 in the United States (Adams et al., 1993). In Germany, the 67.9% in Taiwan (Farrell et al., 2005). In addition, significant increase
morbidity rate of meningitis due to Hib among children has a sub- in beta-lactamase-producing isolates was observed (Tsang et al., 2017).
stantial decline within two years (23 per 100,000 to 6 per 100,000) Nonenzymatic mechanism to beta-lactams in H. influenzae can be
after the vaccine was introduced (Zielen et al., 1992). The morbidity of mediated by modifications in cell permeability, defects in the autolytic
H. influenzae infection was greatly affected by the introduction and system and in overall peptidoglycan synthesis and metabolism, or
coverage of the Hib conjugate vaccine. However, the Hib conjugate amino acid substitutions in penicillin-binding protein 3 (PBP3) encoded
vaccine was introduced to Asia far behind introductions in Europe and by the ftsI gene, and alterations of the target PBPs is the most common
America, especially in the developing countries, which has led to a wide nonenzymatic mechanism involved in beta-lactmase resistance
variation in epidemiology of H. influenzae around the world. The Hib (Clairoux et al., 1992).
vaccination was available in Japan since 2008, but the vaccination rate ROB-1 and TEM-1, are distinct beta-lactamases confer high-level
was low until it became a routine vaccination supported by the gov- resistance to ampicillin and other aminopenicillins, which have been
ernment (Sakata et al., 2017). While in China and many other devel- reported in H. influenzae (Sondergaard and Norskov-Lauritsen, 2016).
oping countries, the Hib vaccination is still voluntary, resulting in a low TEM-1 positive H. influenzae was disseminated worldwide while ROB-1
vaccination rate. The pooled overall coverage of Hib conjugate vaccine positive H. influenzae was mainly found in Canada, the USA and Mexico
was 54.9% in China, and coverage was higher in the east than in the during1999 to 2003. Prevalences of TEM-1 and ROB-1 beta-lactamase
central and west parts of the country (Yang et al., 2019). In recent producing H. influenzae were 90–95% and 5–10%, respectively. Isolates
years, the nasopharyngeal carriage rate of H. influenzae is 26.3% in with both enzymes were also reported (Scriver et al., 1994). There are
children younger than 5 years with acute upper respiratory tract in- susceptibility difference between the two beta-lactamases. The ROB-1
fection of China (Wang et al., 2008). While H. influenzae carriage was subpopulation showed increased cefaclor MIC and resistance compared
detected in 37% of the children and Hib carriage rate was 3% in with TEM-1 isolates (Scriver et al., 1994; Farrell et al., 2005). The
Vietnam (Yoshida et al., 2013). In Nepal, H. influenzae (38.9%) was variation in cefaclor MICs in ROB-1-producing isolates may associated
reported as the leading cause of meningitis in young children (Shrestha with PBP3 substitutions and altered PBP3 in combination with TEM-1 is
et al., 2015). Similar conditions are to be found in other developing well recognized in H. influenzae before (Tristram et al., 2010). Some
countries (Zaidi et al., 2010; Shenoy et al., 2016). Thus H. influenzae beta-lactamase-positive H. influenzae strains were negative for both
infection is still a public health concern over the world, especially for ROB-1 and TEM-1 genes suggesting either a mutation has occurred in
the developing countries, where incidence of invasive infection was either or both ROB-1 and TEM-1 gene(s) to prevent detection by the
much higher than that of the developed countries (Wang et al., 2008; current methodology, or a previously undescribed enzyme is re-
Shrestha et al., 2015). sponsible (Farrell et al., 2005). ROB-1 and TEM-1 are located on large
H. influenzae type b was responsible for > 80% of invasive H. in- integrative conjugative elements (ICEs) or carried on small plasmids,
fluenzae infections before Hib vaccination was implemented, which is thus the resistance to beta-lactams is horizontal transferable among

3
S. Wen, et al. Infection, Genetics and Evolution 80 (2020) 104205

different strains (Leaves et al., 2000). 2.12. Other antibiotic resistance in H. influenzae
H. influenzae isolates resistant to ampicillin without producing an
beta-lactmase is called beta-lactmase-negative ampicillin resistance Macrolides is widely used to treat with NTHi-related respiratory
(BLNAR). The mechanism basis of BLNAR is alteration of PBP3 protein, infections, although low-level intrinsic resistance to macrolide has been
encoded by the ftsI gene. Moreover, increasing resistance of Cefuroxime reported. There are some principle resistance mechanisms of macro-
in nonenzymatic H. influenzae is also linked to mutations in ftsI (Straker lides in H. influenzae which including the acquisition of the drug efflux
et al., 2003). Genotypic characterization of BLNAR strains occurs pump encoded by resistance gene mefA, the overexpression of chro-
through sequencing of the amino acid substitutions presence of the ftsI mosomal multidrug efflux pumps, the acquisition of 23S rRNA methy-
gene, which classified BLNAR strains into three groups (group I to III) lase encoded by resistance gene ermB and amino acid substitutions in
(Ubukata et al., 2001). Base on the level of resistance, BLNAR can be ribosomal proteins that lead to decreased affinity for macrolides
divided into two groups, the high-level resistant group and the low- (Atkinson et al., 2017; Tsuji et al., 2018). Chloramphenicol and tetra-
level resistant group. The high-level resistant group was belonging to cycline resistance in H. influenzae via plasmid-mediated chlor-
the genotypic group III, which was commonly found in Asia. The low- amphenicol acetyltransferase production was most frequently reported
level resistant group, belonging to groups I and II, are widespread and the acquired resistance of the H. influenzae transcipients was re-
around the world (Skaare et al., 2014). transferable (Van et al., 1977). Besides, a relative permeability barrier
In the early 21st century, BLNAR is still rare in China. While in due to the loss of an outer membrane protein was proposed in chlor-
2008, 29.8% of H. influenzae associated community-acquired re- amphenicol resistance (Burns et al., 1985).
spiratory tract infections were caused by BLNAR in Shanghai, and the
proportion was 22.1% in Guangzhou during 2016 to 2017 (Qin et al., 3. Future work
2012; Chen et al., 2018). In recent years, significant increase of BLNAR
were documented worldwide, and wide variations exist in different Along with the introduction of Hib conjugate vaccine, epidemiology
countries (Ubukata et al., 2001; Qin et al., 2012; Schotte et al., 2019). of H. influenzae has changed in recent years. NTHi and other serotypes
For instance, only 6.8% of the H. influenzae isolates were BLNAR during of H. influenzae has become more prevalence than Hib around the
2013 to 2016 in Belgium (Schotte et al., 2019). On the other hand, the world. As the overall coverage of Hib conjugate vaccine in developing
BLNAR has been documented as high as 28.8% in Japan in countries are not that common, H. influenzae is still a threaten pathogen
1997(Ubukata et al., 2001). Although H. influenzae infections causing causing community acquired pneumonia and invasive diseases for
by Hib have declined by the availability of Hib conjugate vaccine, the public health. Rapidly increased antibiotic resistance in H. influenzae
epidemiology and resistance of H. influenzae seemed change after then. has led to treatment failure and which is causing serious burdens to the
publics. Continuous monitoring of the antibiotic resistance and mole-
2.11. Fluoroquinolones-resistant H. influenzae cular evolution in H. influenzae is extremely necessary. To explore how
biofilm formation H. influenzae involves in the pathological process of
Fluoroquinolones (FQs), was frequently used as antimicrobial infection may help for clinical treatment. Moreover, constant vigilance
therapy in respiratory tract infections in adults. FQs-resistant H. influ- and precaution such as new vaccine development is necessary to re-
enzae was first reported in 1993 and the first report of FQs-resistance H. spond to new epidemiology trend of NTHi strains and other serotypes of
influenzae in children was from Hong Kong in 2004 (Ho et al., 2004). In H. influenzae worldwide.
recent years, FQs-resistant H. influenzae increased quickly and spread
worldwide, with a variety in epidemiology (Ho et al., 2004; Li et al., Declaration of Competing Interest
2004; Chang et al., 2010; Puig et al., 2015). In Taiwan, prevalence of
levofloxacin-resistance H. influenzae (the proportion was as high as The authors report no conflicts of interest.
41.7%) was reported and cloning spread has occurred in the nursing
home residents (Chang et al., 2010). While in mainland China, only Acknowledgements
2.7% ciprofloxacin-resistant H. influenzae were detected (Chen et al.,
2018). Nevertheless, the proportion of ciprofloxacin-resistance H. in- This work is supported by the research grants from the Natural
fluenzae in Spain during 2000 to 2013 was low and remained stable Science Foundation of China (No. 81974318), Guangdong Province
(Puig et al., 2015). No levofloxacin-resistant H. influenzae isolates were Science and Technology Innovation Strategy Special Fund (No.
found in Pakistan between 2009 and 2010 (Furqan and Paracha, 2014). 2019B020209001), Natural Science Foundation of Guangdong Province
Although the FQs-resistant H. influenzae was not so common as the (Nos. 2018A030310170 and 2018A030313279) and the Guangdong
BLNAR, levofloxacin treatment failure in H. influenzae relative pneu- Bureau of Traditional Chinese Medicine (No. 20191206).
monia has been reported, which should rise the public concern in
preventing the dissemination of FQs-resistant H. influenzae (Vila et al., References
1999). Resistance to FQs is related to chromosome-mediated mutations
in the quinolone resistance–determining regions (QRDRs) of the genes Adams, W.G., Deaver, K.A., Cochi, S.L., Plikaytis, B.D., Zell, E.R., Broome, C.V., Wenger,
encoding DNA gyrase and topoisomerase IV, including gyrA, gyrB, parC J.D., 1993. Decline of childhood Haemophilus influenzae type b (Hib) disease in the
Hib vaccine era. Jama 269, 221–226.
and parE (Georgiou et al., 1996). Amino acid substitutions in gyrA (at Atack, J.M., Winter, L.E., Jurcisek, J.A., Bakaletz, L.O., Barenkamp, S.J., Jennings, M.P.,
Ser84 and Asp88) and parC (at Gly82, Ser84 and Glu88) are more 2015. Selection and counterselection of Hia expression reveals a key role for phase-
common than in gyrB and parE (Shoji et al., 2014). variable expression of Hia in infection caused by nontypeable Haemophilus influenzae.
J. Infect. Dis. 212, 645–653.
In general, resistance to FQs developed in a stepwise manner, and Atkinson, C.T., Kunde, D.A., Tristram, S.G., 2017. Expression of acquired macrolide re-
DNA gyrase gyrA was considered as the first step of the mechanism. sistance genes in Haemophilus influenzae. J. Antimicrob. Chemother. 72, 3298–3301.
Increasing numbers of mutations in QRDRs was believed to enhance the Brown, M.R.W., Gilbert, P., 1993. Sensitivity of biofilms to antimicrobial agents. J. Appl.
Bacteriol. 74, 87–97.
resistance of FQ (Puig et al., 2015). H. influenzae isolates with amino Burns, J.L., Mendelman, P.M., Levy, J., Stull, T.L., Smith, A.L., 1985. A permeability
acid substitutions in gyrA may remain in the susceptible range ac- barrier as a mechanism of chloramphenicol resistance in Haemophilus influenzae.
cording to the current breakpoints in CLSI (Ho et al., 2004). Nalidixic Antimicrob. Agents Chemother. 27, 46–54.
Chang, C.M., Lauderdale, T.L., Lee, H.C., Lee, N.Y., Wu, C.J., Chen, P.L., Lee, C.C., Chen,
acid can be used for the detection of decreased susceptibility to qui-
P.C., Ko, W.C., 2010. Colonisation of fluoroquinolone-resistant Haemophilus influ-
nolones in H. influenzae (Ho et al., 2004; Perez-Vazquez et al., 2004). enzae among nursing home residents in southern Taiwan. J. Hosp. Infect. 75,
However, NAL screening was not applied routinely in determination of 304–308.
the susceptibilities of H. influenzae in clinics yet. Chen, D., Wen, S., Feng, D., Xu, R., Liu, J., Peters, B.M., Su, D., Lin, Y., Yang, L., Xu, Z.,

4
S. Wen, et al. Infection, Genetics and Evolution 80 (2020) 104205

Shirtliff, M.E., 2018. Microbial virulence, molecular epidemiology and pathogenic Haemophilus influenzae biofilms is independent of biofilm size. Pathog. Dis. 75.
factors of fluoroquinolone-resistant Haemophilus influenzae infections in Guangzhou, Rempe, K.A., Porsch, E.A., Wilson, J.M., St Geme, J.W., 2016. The HMW1 and HMW2
China. Ann. Clin. Microbiol. Antimicrob. 17, 41. adhesins enhance the ability of nontypeable Haemophilus influenzae to colonize the
Clairoux, N., Picard, M., Brochu, A., Rousseau, N., Gourde, P., Beauchamp, D., Parr Jr., upper respiratory tract of rhesus macaques. Infect. Immun. 84, 2771–2778.
T.R., Bergeron, M.G., Malouin, F., 1992. Molecular basis of the non-β-lactamase- Roop, R.M., Kress-Bennett, J.M., Hiller, N.L., Eutsey, R.A., Powell, E., Longwell, M.J.,
mediated resistance to β-lactam antibiotics in strains of Haemophilus influenzae iso- Hillman, T., Blackwell, T., Byers, B., Mell, J.C., Post, J.C., Hu, F.Z., Ehrlich, G.D.,
lated in Canada. Antimicrob. Agents Chemother. 36, 1504–1513. Janto, B.A., 2016. Identification and characterization of msf, a novel virulence factor
Collins, S., Ramsay, M., Slack, M.P., Campbell, H., Flynn, S., Litt, D., Ladhani, S.N., 2014. in Haemophilus influenzae. PLoS One 11, e0149891.
Risk of invasive Haemophilus influenzae infection during pregnancy and association Sakata, H., Adachi, Y., Morozumi, M., Ubukata, K., 2017. Invasive Haemophilus influenzae
with adverse fetal outcomes. Jama 311, 1125–1132. infections in children in Kamikawa subprefecture, Hokkaido, Japan, 2006-2015: the
Davis, G.S., Sandstedt, S.A., Patel, M., Marrs, C.F., Gilsdorf, J.R., 2011. Use of bexB to effectiveness of H. influenzae type b vaccine. J. Infect. Chemother. 23, 459–462.
detect the capsule locus in Haemophilus influenzae. J. Clin. Microbiol. 49, 2594–2601. Satola, S.W., Collins, J.T., Napier, R., Farley, M.M., 2007. Capsule gene analysis of in-
Eton, V., Schroeter, A., Kelly, L., Kirlew, M., Tsang, R.S.W., Ulanova, M., 2017. vasive Haemophilus influenzae: accuracy of serotyping and prevalence of IS1016
Epidemiology of invasive pneumococcal and Haemophilus influenzae diseases in among nontypeable isolates. J. Clin. Microbiol. 45, 3230–3238.
Northwestern Ontario, Canada, 2010-2015. Int. J. Infect. Dis. 65, 27–33. Schotte, L., Wautier, M., Martiny, D., Pierard, D., Depypere, M., 2019. Detection of beta-
Farrell, D.J., Morrissey, I., Bakker, S., Buckridge, S., Felmingham, D., 2005. Global dis- lactamase-negative ampicillin resistance in Haemophilus influenzae in Belgium. Diagn.
tribution of TEM-1 and ROB-1 β-lactamases in Haemophilus influenzae. J. Antimicrob. Microbiol. Infect. Dis. 93, 243–249.
Chemother. 56, 773–776. Scriver, S.R., Walmsley, S.L., Kau, C.L., Hoban, D.J., Brunton, J., Mcgeer, A., Moore, T.C.,
Furqan, S., Paracha, S.A., 2014. Frequency of Streptococcus pneumonia and Haemophilus Witwicki, E., Canadian Haemophilus study group, Low, D.E., 1994. Determination of
influenzae in acute exacerbation of chronic obstructive airway disease and their antimicrobial susceptibilities of Canadian isolates of Haemophilus influenzae and
sensitivity to levofloxacin. JPMA 64, 399–402. characterization of their β-lactamases. Antimicrob. Agents Chemother. 38,
Georgiou, M., Munoz, R., Roman, F., Canton, R., Gomezlus, R., Campos, J., De La Campa, 1678–1680.
A.G., 1996. Ciprofloxacin-resistant Haemophilus influenzae strains possess mutations Shenoy, P.A., Chawla, K., Vishwanath, S., Shaw, D., 2016. Microbiological character-
in analogous positions of GyrA and ParC. Antimicrob. Agents Chemother. 40, ization of Haemophilus influenzae isolated from patients with lower respiratory tract
1741–1744. infections in a tertiary care hospital, south India. J. Clin. Diagn. Res. 10, DC31–34.
Ho, P.L., Chow, K.H., Mak, G.C., Tsang, K.W., Lau, Y.L., Ho, A.Y., Lai, E.L., Chiu, S.S., Shoji, H., Shirakura, T., Fukuchi, K., Takuma, T., Hanaki, H., Tanaka, K., Niki, Y., 2014. A
2004. Decreased levofloxacin susceptibility in Haemophilus influenzae in children, molecular analysis of quinolone-resistant Haemophilus influenzae: validation of the
Hong Kong. Emerg. Infect. Dis. 10, 1960–1962. mutations in quinolone resistance-determining regions. J. Infect. Chemother. 20,
Kilian, M., 1976. A taxonomic study of the genus Haemophilus, with the proposal of a new 250–255.
species. J. Gen. Microbiol. 93, 9–62. Shrestha, R.G., Tandukar, S., Ansari, S., Subedi, A., Shrestha, A., Poudel, R., Adhikari, N.,
Kostyanev, T.S., Sechanova, L.P., 2012. Virulence factors and mechanisms of antibiotic Basnyat, S.R., Sherchand, J.B., 2015. Bacterial meningitis in children under 15 years
resistance of Haemophilus influenzae. Folia Med. 54, 19–23. of age in Nepal. BMC Pediatr. 15, 94.
Kroll, J.S., Zamze, S., Loynds, B., Moxon, E.R., 1989. Common organization of chromo- Skaare, D., Anthonisen, I.L., Caugant, D.A., Jenkins, A., Steinbakk, M., Strand, L.,
somal loci for production of different capsular polysaccharides in Haemophilus in- Sundsfjord, A., Tveten, Y., Kristiansen, B.E., 2014. Multilocus sequence typing and ftsI
fluenzae. J. Bacteriol. 171, 3343–3347. sequencing: a powerful tool for surveillance of penicillin-binding protein 3-mediated
Ladhani, S.N., Collins, S., Vickers, A., Litt, D.J., Crawford, C., Ramsay, M.E., Slack, M.P., beta-lactam resistance in nontypeable Haemophilus influenzae. BMC Microbiol. 14,
2012. Invasive Haemophilus influenzae serotype e and f disease, England and Wales. 131.
Emerg. Infect. Dis. 18, 725–732. Sondergaard, A., Norskov-Lauritsen, N., 2016. Contribution of PBP3 substitutions and
Leaves, N.I., Dimopoulou, I., Hayes, I., Kerridge, S., Falla, T., Secka, O., Adegbola, R.A., TEM-1, TEM-15, and ROB-1 beta-lactamases to cefotaxime resistance in Haemophilus
Slack, M.P., Peto, T.E., Crook, D.W., 2000. Epidemiological studies of large resistance influenzae and Haemophilus parainfluenzae. Microb. Drug Resist. 22, 247–252.
plasmids in Haemophilus. J. Antimicrob. Chemother. 45, 599–604. Straker, K., Wootton, M., Simm, A.M., Bennett, P.M., MacGowan, A.P., Walsh, T.R., 2003.
Li, X., Mariano, N., Rahal, J.J., Urban, C.M., Drlica, K., 2004. Quinolone-resistant Cefuroxime resistance in non-beta-lactamase Haemophilus influenzae is linked to
Haemophilus influenzae in a long-term-care facility: nucleotide sequence character- mutations in ftsI. J. Antimicrob. Chemother. 51, 523–530.
ization of alterations in the genes encoding DNA gyrase and DNA topoisomerase IV. Tristram, S.G., Littlejohn, R., Bradbury, R.S., 2010. blaROB-1 presence on pB1000 in
Antimicrob. Agents Chemother. 48, 3570–3572. Haemophilus influenzae is widespread, and variable cefaclor resistance is associated
Lorenzen, D.R., Düx, F., Wölk, U., Tsirpouchtsidis, A., Haas, G., Meyer, T.F., 1999. with altered penicillin-binding proteins. Antimicrob. Agents Chemother. 54,
Immunoglobulin A1 protease, an exoenzyme of pathogenic neisseriae, is a potent 4945–4947.
inducer of proinflammatory cytokines. J. Exp. Med. 190, 1049–1058. Tsang, R.S.W., Ulanova, M., 2017. The changing epidemiology of invasive Haemophilus
MacNeil, J.R., Cohn, A.C., Farley, M., Mair, R., Baumbach, J., Bennett, N., Gershman, K., influenzae disease: emergence and global presence of serotype a strains that may
Harrison, L.H., Lynfield, R., Petit, S., Reingold, A., Schaffner, W., Thomas, A., require a new vaccine for control. Vaccine 35, 4270–4275.
Coronado, F., Zell, E.R., Mayer, L.W., Clark, T.A., Messonnier, N.E., 2011. Current Tsang, R.S.W., Shuel, M., Whyte, K., Hoang, L., Tyrrell, G., Horsman, G., Wylie, J.,
epidemiology and trends in invasive Haemophilus influenzae disease–United States, Jamieson, F., Lefebvre, B., Haldane, D., Gad, R.R., German, G.J., Needle, R., 2017.
1989-2008. Clin. Infect. Dis. 53, 1230–1236. Antibiotic susceptibility and molecular analysis of invasive Haemophilus influenzae in
Marshall, A.S., Barker, C.I., Pulickal, A.S., Kibwana, E., Gautam, S.C., Clutterbuck, E.A., Canada, 2007 to 2014. J. Antimicrob. Chemother. 72, 1314–1319.
Thorson, S.M., Shrestha, S., Adhikari, N., Pollard, A.J., Kelly, D.F., 2014. The ser- Tsuji, B.T., Fisher, J., Boadi-Yeboah, R., Holden, P.N., Sethi, S., Pettigrew, M.M., Murphy,
oepidemiology of Haemophilus influenzae type b prior to introduction of an im- T.F., 2018. Azithromycin pharmacodynamics against persistent Haemophilus influ-
munization programme in Kathmandu, Nepal. PLoS One 9, e85055. enzae in chronic obstructive pulmonary disease. Antimicrob. Agents Chemother. 62.
Meats, E., Feil, E.J., Stringer, S., Cody, A.J., Goldstein, R., Kroll, J.S., Popovic, T., Spratt, Ubukata, K., Shibasaki, Y., Yamamoto, K., Chiba, N., Hasegawa, K., Takeuchi, Y.,
B.G., 2003. Characterization of encapsulated and noncapsulated Haemophilus influ- Sunakawa, K., Inoue, M., Konno, M., 2001. Association of amino acid substitutions in
enzae and determination of phylogenetic relationships by multilocus sequence typing. penicillin-binding protein 3 with beta-lactam resistance in beta-lactamase-negative
J. Clin. Microbiol. 41, 1623–1636. ampicillin-resistant Haemophilus influenzae. Antimicrob. Agents Chemother. 45,
Mohd-Zain, Z., Kamsani, N.H., Ismail, I.S., Ahmad, N., 2012. Antibiotic susceptibility 1693–1699.
profile of Haemophilus influenzae and transfer of co-trimoxazole resistance determi- Unal, C.M., Singh, B., Fleury, C., Singh, K., Chavez de Paz, L., Svensater, G., Riesbeck, K.,
nants. Trop. Biomed. 29, 372–380. 2012. QseC controls biofilm formation of non-typeable Haemophilus influenzae in
Murphy, T.F., Kirkham, C., 2002. Biofilm formation by nontypeable Haemophilus influ- addition to an AI-2-dependent mechanism. Int. J. Med. Microbiol. 302, 261–269.
enzae: strain variability, outer membrane antigen expression and role of pili. BMC Van, K.B., Van, E.J.D.A., Dessens, K.M., 1977. Plasmid-mediated chloramphenicol re-
Microbiol. 2. sistance in Haemophilus influenzae. Antimicrob. Agents Chemother. 11, 383–387.
Murphy, T.F., Kirkham, C., Jones, M.M., Sethi, S., Kong, Y., Pettigrew, M.M., 2015. Van, E.J., Slack, M.P.E., Ladhani, S., Cripps, A.W., 2014. Non-typeable Haemophilus in-
Expression of IgA proteases by Haemophilus influenzae in the respiratory tract of fluenzae, an under-recognised pathogen. Lancet Infect. Dis. 14, 1281–1292.
adults with chronic obstructive pulmonary disease. J. Infect. Dis. 212, 1798–1805. Vila, J., Ruiz, J., Sanchez, F., Navarro, F., Mirelis, B., Anta, M.T.J., Prats, G., 1999.
Perez-Vazquez, M., Roman, F., Aracil, B., Canton, R., Campos, J., 2004. Laboratory de- Increase in quinolone resistance in a Haemophilus influenzae strain isolated from a
tection of Haemophilus influenzae with decreased susceptibility to nalidixic acid, ci- patient with recurrent respiratory infections treated with Ofloxacin. Antimicrob.
profloxacin, levofloxacin, and moxifloxacin due to gyrA and parC mutations. J. Clin. Agents Chemother. 43, 161–162.
Microbiol. 42, 1185–1191. Vogel, A.R., Szelestey, B.R., Raffel, F.K., Sharpe, S.W., Gearinger, R.L., Justice, S.S.,
Poulsen, K., Reinholdt, J., Kilian, M., 1992. A comparative genetic study of serologically Mason, K.M., 2012. SapF-mediated heme-iron utilization enhances persistence and
distinct Haemophilus influenzae Type 1 immunoglobulin Al proteases. J. Bacteriol. coordinates biofilm architecture of Haemophilus. Front. Cell. Infect. Microbiol. 2, 42.
174, 2913–2921. Wang, A., Yu, S., Yao, K., Zhang, W., Yuan, L., Wang, Y., Wei, J., Shen, X., Yang, Y., 2008.
Puig, C., Tirado-Velez, J.M., Calatayud, L., Tubau, F., Garmendia, J., Ardanuy, C., Marti, Antimicrobial susceptibility of Haemophilus influenzae strains and antibiotics usage
S., de la Campa, A.G., Linares, J., 2015. Molecular characterization of fluor- patterns in pediatric outpatients: results from a children's hospital in China
oquinolone resistance in nontypeable Haemophilus influenzae clinical isolates. (2000–2004). Pediatr. Pulmonol. 43, 457–462.
Antimicrob. Agents Chemother. 59, 461–466. Webster, P., Wu, S., Gomez, G., Apicella, M., Plaut, A.G., St Geme, J.W., 2006.
Qin, L., Zhou, Z., Hu, B., Yamamoto, T., Watanabe, H., 2012. Antimicrobial susceptibility Distribution of bacterial proteins in biofilms formed by non-typeable Haemophilus
and genetic characteristics of Haemophilus influenzae isolated from community-ac- influenzae. J. Histochem. Cytochem. 54, 829–842.
quired respiratory tract infection patients in Shanghai City, China. J. Infect. Whittaker, R., Economopoulou, A., Dias, J.G., Bancroft, E., Ramliden, M., Celentano, L.P.,
Chemother. 18, 508–514. 2017. Epidemiology of invasive Haemophilus influenzae disease, Europe, 2007–2014.
Reimche, J.L., Kirse, D.J., Whigham, A.S., Swords, W.E., 2017. Resistance of non-typeable Emerg. Infect. Dis. 23, 396–404.

5
S. Wen, et al. Infection, Genetics and Evolution 80 (2020) 104205

Yang, Y., Yang, Y., Scherpbier, R.W., Zhu, X., Chen, Y., Zhou, Y., Jiang, Q., 2019. conjugate vaccine introduction in Central Vietnam. J. Pediatr. 163, S38–S43.
Coverage of Haemophilus influenzae type b conjugate vaccine for children in mainland Zaidi, A.K., Khan, H., Sherali, A.R., Lasi, R., 2010. Burden of Haemophilus influenzae type b
China: systematic review and meta-analysis. Pediatr. Infect. Dis. J. 38, 248–252. disease in Pakistani children. East. Mediterr. Health J. 16, 590–594.
Yoshida, L.M., Nguyen, H.A., Watanabe, K., Le, M.N., Nguyen, A.T., Vu, H.T., Yoshino, H., Zielen, S., Scheurer, J., Rhodius, U., Schafer, V., Isenberg, H., Bauscher, P., Schroder, S.,
Suzuki, M., Takahashi, K., Le, T., Moriuch, H., Kilgore, P.E., Edmond, K., Mulholland, Ahrens, P., Hofmann, D., 1992. Effectiveness of Haemophilus influenzae B-diphtheria
K., Dang, D.A., Ariyoshi, K., 2013. Incidence of radiologically-confirmed pneumonia conjugate vaccination in German children. Monatsschr. Kinderh. 140, 852–856.
and Haemophilus influenzae type b carriage before Haemophilus influenzae type b

You might also like