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Touch DNA Recovery From Vehicle Surfaces Using Different Swabs
Touch DNA Recovery From Vehicle Surfaces Using Different Swabs
DOI: 10.1111/1556-4029.14932
TECHNICAL NOTE
Criminalistics
KEYWORDS
4N6FLOQSwabs™, cotton swab, PurFlock® swab, touch DNA, trace DNA, vehicle surface
Highlights
• Three types of swabs were tested for the collection of touch DNA in vehicles.
• The type of swab used in touch DNA samples was more important than the type of substrate
for the rate of allele recovery.
• PurFlock® swabs (Puritan, USA) were able to retrieve complete STR profiles from vehicle
surfaces.
• Gearshift knobs and steering wheel are good surfaces for contact DNA collection.
1 | I NTRO D U C TI O N to the left and once to the right, sequential shifting to six gears and
reverse, and release followed by activation of parking brake. After
In recent years, techniques associated with genetic material found each movement sequence, contact DNA collection was immediately
at crime scenes have advanced a lot [1]. In 1997, there was the first performed on each of the touched surfaces. This was repeated three
report on obtaining full genetic profiles from objects handled by sus- times for each donor. From one donor to another, the collection sur-
pects [2]. Since then, several types of objects have been investigated faces (steering wheel, gearshift knob, and parking brake lever) were
for DNA collection, including documents, ammunition, tools, cloth- sterilized with gauze soaked in 1% sodium hypochlorite, followed by
ing, gloves, glasses, watches, vehicles, doors, among others [1, 3–5]. 70% alcohol. After sterilization, one swab sample was collected to
This form of trace evidence has been called touch DNA, contact control persistent alleles. Twelve samples were taken from each col-
DNA, or trace DNA. Such sample types often have DNA concentra- lection surface and swab type, totaling 36 per swab and 108 in total.
tions well below the threshold for genetic profile detection and/or The samples were collected by the same person.
interpretation [6]. For this reason, at any stage of sample processing, PurFlock® swabs (Puritan, USA), 4N6FLOQSwabs™ (Copan
loss of DNA fractions or even potential contamination can preclude S.p.A., Italy) and cotton swab (Labor Import) were moistened with
the pursuit of a satisfactory genetic profile [6, 7]. A key factor for 30 μl TE solution before sampling. For each sample, a single swab
success in obtaining material from touch DNA is the method used for was used. Swab heads were broken off into safe-lock tubes for or-
DNA recovery. Several DNA collection techniques are used in crime- ganic extraction.
related places or objects. The most common are swabs of various
types, adhesives, scraping, and tissue cutting [8–10].
Of these, the first is the most common in several forensic inves- 2.2 | DNA analysis
tigation agencies in Brazil and worldwide, which have employed a
technique known as double swab [11]. Notably, touch DNA recov- Samples were incubated in lysis buffer [10 mM Tris-HCl; 100 mM
ery efficacy can be influenced by the type of swab used [12, 13]. NaCl; 10 mM EDTA (pH 8.0); SDS 2%] plus 24 μg proteinase K and
Overall, synthetic fiber swabs (rayon, nylon, and polyester) are more 48 μmol DTT for 2 h at 56 °C. Organic extraction was performed with
efficient in absorbing solutions and releasing cells attached to sur- phenol-chloroform-isoamyl alcohol (25: 24: 1, v/v/v). Precipitation
faces. However, a higher absorption is not inherently linked to higher was performed by adding 10% of the recovered volume of NaCl
DNA recovery rates [14]. Substrates from which samples are taken (5 M) and 2x Ethanol AS, with incubation at −20°C for 2 h. Finally,
can also have a direct impact on the efficiency of certain swabs [15]. the DNA was resuspended in TE−4 buffer [10 mM Tris-HCl; 0.1mM
In Brazil, there is a growing demand for touch DNA collected EDTA (pH8.0)] and kept at 4°C until the time of PCR assay.
from vehicles involved in robberies and murders [16]. Since efficient Real-time qPCR analysis was performed using the Investigator
methods for collecting touch DNA from vehicles must be established Quantiplex Human™ kit (QIAgen) and 7500 Real-Time PCR system
to support the police investigation, our objective was to evaluate the (Applied Biosystems). To this end, we followed the manufacturer's
efficacy of three swab types for touch DNA recovery. protocol except for half-reaction volumes being used.
The DNA samples were amplified by the PCR (Polymerase Chain
Reaction) method using the PowerPlex® Fusion 6C System for
2 | M ATE R I A L A N D M E TH O DS human identification (Promega Corporation, USA), according to the
manufacturer's protocol.
2.1 | Sample preparation and DNA collection PCR-amplified products were subjected to capillary electropho-
resis on an ABI 3500 Genetic Analyser for Human Identification
This study compared three swab types: PurFlock® (Puritan, USA), (Thermo Fisher Scientific) and further analyzed by the GeneMapperTM
consisting of polyester fibers; 4N6FLOQSwabs™ (Copan S.p.A., ID-X software (v 4.0), according to the manufacturer's protocol. The
Italy), consisting of flocked nylon fibers, and cotton swab (Labor analytical threshold was set to 150 RFU. An individual peak was con-
Import). The experiments were carried out in the same vehicle, using sidered to be homozygous if the peak height was at least three times
the gearshift knob, the parking brake lever, and the steering wheel greater than the next highest allele. In the case of mixtures, all alleles
as a substrate to collect contact DNA. The steering wheel was made with a peak size greater than half the size of the largest allele were
of rigid plastic with no cover. included, up to a maximum of four alleles.
Four male donors were examined. The donors signed a consent
form. DNA reference profiles of all participants were generated
from FTA card (Whatman®) blood samples to compare with those 2.3 | Statistical analysis
obtained in the experiments. Five minutes before the experiments,
participants were asked to wash their hands, without soap, to remove First of all, the number of alleles in the reference profiles of each
excess cellular and cell-free DNA. For the donor to touch the collec- donor was counted. Then, the same process was applied to the sam-
tion surfaces, a sequence of moves was set to be made with the car ples collected during the experiment. Finally, the ratio of recovered
turned off. These comprised fully turning the steering wheel once alleles in relation to total alleles for each donor was presented as
GIOVANELLI et al. |
3
conducted with a Bonferroni adjustment to the significance level to parking brake lever 0.56 0.72
assess where these differences originated. Cotton swab gearshift knob 0.04 0.04
Spearman's correlation test was performed to examine associa- steering wheel 0.04 0.05
tions between allele retrieval rate and DNA amount for each swab parking brake lever 0.03 0.05
type. Statistical analyses were performed using the PAST software 4N6FLOQSwabs™ gearshift knob 0.01 0.02
v. 4.0.3 (Hammer et. al., 2001) [17]. steering wheel 0.02 0.02
parking brake lever 0.01 0.02
3 | R E S U LT S
cotton swab (Spearman rs = 0.886; p = 7.1 X 10−13) and PurFlock® can have totally different efficiencies, such as the 4N6FLOQSwab
swab (Spearman rs = 0.765; p = 8.57 × 10−8). Conversely, there was developed for oral collection, which showed better DNA recovery
no significant correlation between DNA amounts recovered from efficiency than the similar 4N6FLOQSwab developed for crime
4N6FLOQSwabs™ and percentages amplified alleles (Spearman rs = scene collection. [14]. In turn, cotton swabs (Bode SecurswabTM)
−0.0642; p = 0.71). have shown much higher efficiency than nylon-flocked swabs
There was a visible difference in the success of allele recovery (Copan 4N6) [15].
among the four male donors. Figure 2 shows the total number of As extraction methods highly influence DNA recoverability
samples (nine for each treatment) wherein 50% or more of the donor [8], collection devices can have their efficacy improved by the ex-
alleles were recovered. Some participants had consistently high or traction technique used [16, 18]. This may be related to either DNA
low allele deposition. Donors 4 and 3 (D4 and D3) had the best absorption or retention by each swab type, which varies consider-
deposition rates, while donor 1 (D1) had the lowest rates, regardless ably [19]. In this study, we only used organic extraction, which had its
of the swab used. efficiency proved for low DNA-content samples in a previous study
On the other hand, PurFlock® swab had the best allele recovery [20]. Therefore, further studies should be carried out with different
rates for all donors while 4N6FLOQSwabs™ had the worst recovery extraction methods so that the performance of different swabs on
rates per donor. Cotton swab worked well for some types of donors the same surfaces (gearshift knob, steering wheel, and parking brake
(D4 and D3), but performed poorly for D2 and D1 donors. lever) could be assessed.
Furthermore, this study showed large differences in terms of
shedders status. This corroborates findings in the literature, which
4 | D I S C U S S I O N show that some people leave more genetic material than others
on objects. In this context, individual, gender, and age-related dif-
Our findings point to greater efficiency of the PurFlock® swab, both ferences of shedders status have been reported [1, 8, 9, 21–23].
for the amount of DNA recovered and amplified alleles, regardless Another study on touch DNA recovery from steering wheels also
of the surface. It is worth noting that all surfaces were composed showed that primary donor alleles persist longer than secondary
of the same material (rigid plastic); however, the steering wheel dif- donor ones [24].
fered by being larger in size and having small grooves. Of all swabs,
4N6FLOQSwabs™ had the worst performance.
Both collection devices [8, 12, 18] and surfaces [1, 10, 13, 18] 5 | CO N C LU S I O N S
influence the success rate of DNA recovery. For example, one study
showed that polyester and foam swabs were more efficient in recov- Our results show that even brief contact by a driver with parts of a
ering alleles on hard plastic (screwdriver handle) and wooden sur- vehicle is capable of releasing enough DNA to amplify a complete
faces, while cotton swabs were more efficient on smooth surfaces STR profile. However, it was observed that the success in DNA re-
(aluminum can and glassware) [12]. On the other hand, some stud- covery was influenced by the type of swab used and by the shedders
ies have shown greater efficiency of 4N6FLOQSwabs™, including status. In the experimental conditions tested, the PurFlock® swab
steering wheels [19], when compared with other collection devices. was more efficient for recovering donor alleles than the others (cot-
However, swabs from the same material and the same manufacturer ton and 4N6FLOQSwabs™), especially for small DNA amounts. This
GIOVANELLI et al. |
5
swab is therefore suitable for collecting contact DNA in vehicles in- 12. Hartless S, Walton-Williams L, Williams G. Critical evaluation of
volved in crimes, with the gearshift knob and steering wheel being touch DNA recovery methods for forensic purposes. Forensic Sci
Int Genet Suppl Ser. 2019;7(1):379–8 0. https://doi.org/10.1016/j.
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fsigss.2019.10.020
pared with gearshift knobs, one disadvantage of the steering wheels 13. Haase HT, Mogensen HS, Petersen CB, Petersen JF, Holmer A,
is their large surface area to be sampled. This hinders identifying the Børsting C, et al. Optimization of the collection and analysis of
area touched by suspects since the way to hold the steering wheel touch DNA traces. Forensic Sci Int Genet Suppl Ser. 2019;7(1):8–
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Alexandre Giovanelli https://orcid.org/0000-0002-7452-323X rect kit for extraction of touch DNA samples obtained from cars
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https://doi.org/10.1016/j.fsigss.2019.09.007
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