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  • DSAI PPT - Prachi Verma & Sanjyoti Das

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    Sanjyoti Das
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    This document provides an overview of natural language processing (NLP) methods applied to clinical notes related to chronic diseases. It outlines the typical NLP pipeline used, including data acquisition, preprocessing, feature engineering, model building, evaluation and deployment. It notes that most studies use non-public datasets, but the most common public datasets are from the i2b2 project. The document also specifies the roles of each author, with one focusing on data acquisition and NLP techniques, and the other on model training/testing and conclusions.

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    This document provides an overview of natural language processing (NLP) methods applied to clinical notes related to chronic diseases. It outlines the typical NLP pipeline used, including data acquisition, preprocessing, feature engineering, model building, evaluation and deployment. It notes that most studies use non-public datasets, but the most common public datasets are from the i2b2 project. The document also specifies the roles of each author, with one focusing on data acquisition and NLP techniques, and the other on model training/testing and conclusions.

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    20 views6 pages

    DSAI PPT - Prachi Verma & Sanjyoti Das

    Uploaded by

    Sanjyoti Das
    This document provides an overview of natural language processing (NLP) methods applied to clinical notes related to chronic diseases. It outlines the typical NLP pipeline used, including data acquisition, preprocessing, feature engineering, model building, evaluation and deployment. It notes that most studies use non-public datasets, but the most common public datasets are from the i2b2 project. The document also specifies the roles of each author, with one focusing on data acquisition and NLP techniques, and the other on model training/testing and conclusions.

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    © All Rights Reserved
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    of 6

    Natural Language Processing

    for Clinical Notes


    By -
    Prachi Verma - B120042
    Sanjyoti Das - B120054
    OBJECTIVE
    The goal of the research was to provide a comprehensive
    overview of the development and uptake of NLP methods
    applied to free-text clinical notes related to chronic diseases,
    including the investigation of challenges faced by NLP
    methodologies in understanding clinical narratives.
    NLP PIPELINE

    Data Acquisition
    Text cleanup and Extraction
    Preprocessing
    Feature Engineering
    Model Building
    Evaluation
    Deployment
    Monitor & Update
    DATA ACQUISITION
    The majority of the papers describe experiments run on datasets
    that are not publicly available.
    On the other hand, out of 16 papers involving publicly available
    corpora, 12 exploit the Informatics for Integrating Biology and the
    Bedside (i2b2) datasets.
    The other 4 public datasets used are MIMIC-II, PhenoCHF, Temporal
    Histories of Your Medical Event (THYME), and Cancer Deep
    Phenotype Extraction (DeepPhe)
    ROLE OF MEMBERS

    Prachi Verma Sanjyoti Das

    Application of various
    Data Acquisition
    NLP techniques
    Training and
    Results, conclusions
    Testing Model
    and inferences
    THANK YOU

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