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Research Notes 451

diagnosis of several pulmonary disorders [6], they RESEARCH NOTE


should be performed only after other diagnostic
procedures, e.g., bronchoalveolar lavage. In our
experience, lung biopsies are rarely performed as
the first-choice procedure for diagnosis of deep The use of antibiotic-containing agars for
mycosis. the isolation of extended-spectrum
PCR amplification of DNA from both mycelia b-lactamase-producing organisms in
and spherules showed a single amplification intensive care units
product of c. 340 bp. A BLAST search showed G. Wilson and D. McCabe
homology only for Coccidioides spp. sequences,
which suggests that amplicon sequencing is Department of Medical Microbiology, Stirling
not necessary for routine diagnostic purposes. Royal Infirmary, Stirling, UK
However, further studies with more patients
are required to evaluate the sensitivity of the
present protocol. In the protocol described by
Burt et al. [7], filamentous cultures of Coccidioides ABSTRACT
spp. were grown in broth medium and then
MacConkey agar containing either cefotaxime
inactivated by heating, followed by freezing in
1.0 mg ⁄ L or ceftazidime 1.0 mg ⁄ L was evaluated
liquid nitrogen and lyophilisation before extrac-
for use in screening for extended-spectrum
tion of DNA. The present study used an alternat-
b-lactamase (ESBL)-producing organisms. The
ive method for safe DNA extraction from media were evaluated using known ESBL-posit-
filamentous cultures growing on solid media. ive and -negative strains and 630 clinical
This protocol may be performed directly on specimens over a 6-month period. All Entero-
suspicious cultures grown from clinical material, bacteriaceae isolated were identified and screened
thereby reducing the time required to obtain for ESBL production by phenotypic methods.
definitive diagnostic results. In total, 14 ESBL-producing organisms were
detected in the clinical samples. All known
ACKNOWLEDGEMENTS ESBL-positive strains were also detected. The
use of both screening plates was required to
This work was supported by CNPq Conselho Nacional de detect all ESBLs.
Desenvolvimento Cientı́fico e Tecnológico (Process:
478355 ⁄ 2003-3) and FAPESP Fundação de Amparo à Pesquisa Keywords Detection, Enterobacteriaceae, extended-
do Estado de São Paulo (Process: 4 ⁄ 14270-0). spectrum b-lactamases, MacConkey selective agars,
screening media, surveillance
REFERENCES Original Submission: 30 November 2005; Revised Sub-
1. Bialek R, Kern J, Herrmann T et al. PCR assays for identi- mission: 5 October 2006; Accepted: 19 October 2006
fication of Coccidioides posadasii based on the nucleotide
Clin Microbiol Infect 2007; 13: 451–453
sequence of the antigen 2 ⁄ proline-rich antigen. J Clin
Microbiol 2004; 42: 778–783. 10.1111/j.1469-0691.2006.01667.x
2. Cox R, Magee DM. Coccidioidomycosis: host response
and vaccine development. Clin Microbiol Rev 2004; 17: 804–
839. Detection of organisms producing an extended-
3. Galgiani JN, Ampel NM, Blair JE et al. Coccidioidomycosis. spectrum b-lactamase (ESBL) is not always easy
Clin Infect Dis 2005; 41: 1217–1223. with routine susceptibility testing [1–3], and
4. de Hoog GS, Guarro J, Gene J, Figueras MJ. Atlas of clinical delays in recognition, resulting in unsuitable
fungi. Reus: Centraalbureau voor Schimmelcultures ⁄ Uni-
versitat Rovira i Virgili, 2001.
treatment with cephalosporins of severe infec-
5. Sanguinetti CJ, Dias N, Simpson AJG. Rapid silver staining tions caused by ESBL producers, has been linked
and recovery of PCR products separated on polyacrylamide with a rise in the mortality rate [4]. There is a need
gels. Biotechniques 1994; 17: 915–918.
6. Gal AA. Use and abuse of lung biopsy. Adv Anat Pathol
2005; 12: 195–202.
Corresponding author and reprint requests: G. Wilson,
7. Burt A, Carter DA, Koenig GL et al. A safe method of
Department of Medical Microbiology, Stirling Royal Infirmary,
extracting DNA from Coccidioides immitis. Fungal Genet
Stirling, FK8 2AU, UK
Newslett 1995; 42: 23.
E-mail: gwilson44@btinternet.com

 2007 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 13, 430–456
452 Clinical Microbiology and Infection, Volume 13 Number 4, April 2007

for a sensitive and simple screening procedure to organisms. Isolates and controls were screened
enhance the detection of ESBL-producing bacteria for ESBL production by the Jarlier synergy test [8]
[5]. Ideally, use of a screening agar would allow and a combination disk method (Oxoid). The
the initial isolation and recognition of potential sensitivities and specificities (with 95% CIs) of
ESBL-producing organisms. Thus, previous the two screening agars were calculated.
studies have attempted to develop screening All 50 negative controls grew on the control
agars containing a single cephalosporin, either MacConkey plate, but were inhibited from grow-
cefotaxime or ceftazidime [6,7]. ing on the two antibiotic-containing plates. The
The present study evaluated the use of growth of organisms producing known ESBLs is
two screening agars in combination to detect summarised in Table 1. All of the positive con-
ESBL-producing strains isolated from intensive trols were detected by the Jarlier test. In total, 120
care unit (ICU) patients in Forth Valley Acute
Hospitals, Scotland. In total, 40 ESBL-positive
isolates, consisting of 16 strains producing known Table 1. Growth of organisms producing known exten-
ded-spectrum b-lactamases (ESBLs) on MacConkey agar
ESBL enzyme types and 24 ESBL producers containing cefotaxime or ceftazidime
(phenotypically determined) from clinical sam-
Mac X Mac Z
ples, and 50 negative controls, comprising known ESBL (cefotaxime 1.0 mg ⁄ L) (ceftazidime 1.0 mg ⁄ L)
b-lactamase-positive but non-ESBL-producing
SHV-2 + +
clinical isolates, were used in the primary evalu- SHV-3 – +
ation of the media. In addition, Escherichia coli SHV-4 – +
SHV-5 + +
ATCC25922 was used as a negative ESBL control, SHV-6 – +
TEM-3 + +
and Klebsiella pneumoniae ATCC 700603 was used TEM-6 + +
as a positive ESBL control. For the clinical TEM-7 – +
TEM-8 + +
evaluation, 630 routine samples were collected TEM-10 – +
from the ICUs of Forth Valley Acute Hospitals TEM-12 – +
TEM-16 + +
over a 6-month period; these consisted of urines TEM-17 – +
TEM-24 + +
(n = 192), tracheal aspirates (n = 122), groin TEM-26 + +
swabs (n = 200), wound swabs (n = 106) and CTX M-15 + –

faeces (n = 10). +, presence of growth; –, absence of growth.


Mac X medium consisted of MacConkey agar
(Oxoid, Basingstoke, UK) supplemented with
Table 2. Identity and number of clinical isolates grown
cefotaxime sodium (Hoechst Marion Roussel, from clinical specimens on screening plates
Bridgewater, NJ, USA) 1.0 mg ⁄ L. Mac Z medium
Specimen type Organisms (n) ESBL-positive (n)
consisted of MacConkey agar supplemented with
ceftazidime pentahydrate (GlaxoSmithKline, Urine Escherichia coli (2)
Klebsiella oxytoca (1)
Brentford, UK) 1.0 mg ⁄ L. MacConkey agar was Enterobacter cloacae (2) 2
prepared according to the manufacturer’s instruc- Endotracheal aspirates Klebsiella pneumoniae (5) 4
Enterobacter cloacae (1)
tions; the corresponding antibiotic solutions were Pseudomonas spp. (22)
Groin swabs Escherichia coli (22)
filter-sterilised and added aseptically following Klebsiella oxytoca (5)
sterilisation of the agar. Klebsiella pneumoniae (7) 6
Hafnia alvei (1)
Each clinical sample and all controls were Stenotrophomonas maltophilia (1)
Serratia liquefaciens (1)
inoculated on a MacConkey agar control plate, Proteus mirabilis (2)
Mac X and Mac Z. All Enterobacteriaceae growing Enterobacter cloacae (1)
Enterobacter aerogenes (2)
on the control plate were identified using the Citrobacter koserii (1)
Citrobacter freundii (1) 1
API 10S system (bioMérieux, Marcy l’Etoile, Pseudomonas spp. (10)
France) and were tested for ESBL production. Wound swabs Escherichia coli (13)
Klebsiella oxytoca (7) 1
Any organism growing on the two antibiotic- Morganella morganii (1)
containing test plates was identified by the API 10S Acinetobacter baumanii (1)
Enterobacter cloacae (1)
system and the VITEK 2 system (bioMérieux). This Enterobacter aerogenes (1)
Pseudomonas spp. (3)
allowed comparisons with the test agars, as the Faeces Escherichia coli (3)
growth on the control plate reflected the overall Klebsiella oxytoca (1)
Pseudomonas spp. (2)
flora of the subject, including any ESBL-producing

 2007 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 13, 430–456
Research Notes 453

isolates from clinical specimens grew on the In conclusion, it is suggested that two screening
screening agars (Table 2), including 14 probable plates, one containing cefotaxime 1.0 mg ⁄ L and
ESBL-producing organisms. Apart from two one containing ceftazidime 1.0 mg ⁄ L, can be used
isolates of Enterobacter cloacae, all of these pre- to screen for ESBL-producing organisms. Such a
sumptive ESBL producers showed enhanced screening method would provide a quick and
resistance to cefotaxime and ceftazidime using easy-to-use method for detecting ESBL-producing
the Jarlier test, and demonstrated a ‡5 mm organisms in ICUs and elsewhere in hospitals,
increase in zone diameters using the combination and could therefore form a useful adjunct to
disk test for the cephalosporins plus clavulanic hospital infection control measures.
acid; the two Ent. cloacae isolates gave a negative
result in the combination disk test. No ESBL-
ACKNOWLEDGEMENTS
producing organisms grew only on the MacCon-
key control plate. This work was presented, in part, at the 15th European
An initial screening test to facilitate the detec- Congress of Clinical Microbiology and Infectious Disease,
Copenhagen, 2005.
tion of ESBL-producing bacteria in a clinical
setting is important not only for guiding treat-
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 2007 Copyright by the European Society of Clinical Microbiology and Infectious Diseases, CMI, 13, 430–456

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