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MANIPULATING GENOMES — MODULE 6 SPECIFICATION POINTS {a) the principles of DNA sequencing and the development of new DNA sequencing techniques To include the rapid advancements of the techniques used in sequencing, which have increased the speed of sequencing and allowed whole genome sequencing e.g. high-throughput sequer HSW7 (b) (i) how gene sequencing has allowed for genome-wide comparisons between individuals and between species i) how gene sequencing has allowed for the sequences of amino acids in polypeptides to be predicted ii) how gene sequencing has allowed for the development of synthetic biology With reference to bioinformatics and computational biology and how these fields are contributing to biological research into genotype-phenotype relationships, epidemiology and searching for evolutionary relationships. PAG10 HSW7, HSW9- (c) the principles of DNA profiling and its uses To include forensics and analysis of disease risk. Hsw9 (q) the principles of the polymerase chain reaction (PCR) and its application in DNA analysis. (@) the principles and uses of electrophoresis for separating nucleic acid fragments or proteins Opportunity for practical use of electrophoresis. PAGS Hswa (f) (i) the principles of genetic engineering (ii) the techniques used in genetic engineering To include the isolation of genes from one organism and the placing of these genes into another organism using suitable vectors. To include the use of restriction enzymes, plasmids and DNA ligase to form recombinant DNA with the desired gene and electroporation, Hsw2 (g) the ethical issues (both positive and negative) relating to the genetic manipulation of animals (including humans), plants and microorganisms To include insect resistance in genetically modified soya, genetically modified pathogens for research and “pharming’ i.e. genetically modified animals to produce pharmaceuticals, AND issues relating to patenting and technology transfer e.g. making genetically modified seed available to poor farmers. Hsw10 (h) the principles of, and potential for, gene therapy in medicine To include the differences between somatic cell gene therapy and germ line cell gene therapy. 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This is coded by the start codon AUG Give a reason why Leucine is not the last amino acid in this polypeptide . What is the term to describe the sequence of amino acids? . Name the enzyme that transcribes the template strand of DNA . Name the enzyme that is able to copy mRNA into cDNA . Amino acids such as serine (Ser) and threonine (Thr) are need to form the secondary structure. Describe the properties of these amino acid’s R groups. Rone UT twee y YOU oytire C Usk Sooeadon ak Sepcaon tuclstire F =} tig)}ivere 1 tec, . cw cou) AU assna) CSU BE nom L Elm exe} amare leony oe. P ett ouanee, SB) Ate | omar Efren anc | Moune | Ren } Sere s TA une 2 SS aan, uw: eau AU, epee oau G0 [veiw V 8° Lpaine eae and Efe, Gu, sco A \Gna ben: | Sae. G Uke Sep eaon_ UGC Troctan Suppose we compare the beta chain of hemoglobin (the oxygen-carrying protein in blood) between humans and a variety of other species. If we compare the human and the bush baby versions of the protein, we'll find 4 amino acid differences. If we instead compare the human and flying squirrel, we'll find 15 differences. With human compared to a cus cus, we're up to 45 amino acid differences, and with human versus mud skipper, we see 65 differences. Using this info put the species onto the phylogenetic tree XY 7 \~ Question The 2 species synthesise the same polypeptide, with the same primary structure, however, due to millions of years since a common ancestor the genes have different base sequences. 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