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  • Coding Cap3

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    Awawawawa Uwuwuwuwu
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    The document runs CAP3 assembly on three Trinity assemblies to generate consensus sequences, concatenates the contig and singlet output files for each assembly into a single file, and redirects the output to new files named for each respective assembly.

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    The document runs CAP3 assembly on three Trinity assemblies to generate consensus sequences, concatenates the contig and singlet output files for each assembly into a single file, and redirects the output to new files named for each respective assembly.

    Copyright:

    © All Rights Reserved
    Download as TXT, PDF, TXT or read online from Scribd
    Flag for inappropriate content
    9 views1 page

    Coding Cap3

    Uploaded by

    Awawawawa Uwuwuwuwu
    The document runs CAP3 assembly on three Trinity assemblies to generate consensus sequences, concatenates the contig and singlet output files for each assembly into a single file, and redirects the output to new files named for each respective assembly.

    Copyright:

    © All Rights Reserved
    Download as TXT, PDF, TXT or read online from Scribd
    Flag for inappropriate content
    of 1

    /usr/local/NGS/CAP3/cap3 trinityFalShtKrt.Trinity.

    fasta -p 90 >
    trinityFalShtKrt.Trinity.cap3 & /usr/local/NGS/CAP3/cap3
    trinityFalSht.Trinity.fasta -p 90 > trinityFalSht.Trinity.cap3 &
    /usr/local/NGS/CAP3/cap3 trinityFalKrt.Trinity.fasta -p 90 >
    trinityFalKrt.Trinity.cap3

    cat trinityFalSht.Trinity.fasta.cap.contigs
    trinityFalSht.Trinity.fasta.cap.singlets > trinityFalSht.CAP3
    [agrohort@agrohort-server CleanData]$ cat
    trinityFalShtKrt.Trinity.fasta.cap.contigs
    trinityFalShtKrt.Trinity.fasta.cap.singlets > trinityFalShtKrt.CAP3
    [agrohort@agrohort-server CleanData]$ cat trinityFalKrt.Trinity.fasta.cap.contigs
    trinityFalKrt.Trinity.fasta.cap.singlets > trinityFalKrt.CAP3

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