#!

/bin/bash

#TODO: add flag to trigger deletion of original processorX directories after

successful reconstruction

if [ -z "$1" ]; then
echo ""
echo " K. Wardle 5/18/09"
echo " bash script to run reconstructPar in pseudo-parallel mode"
echo " by breaking time directories into multiple ranges"
echo ""
echo " USAGE: $0 <NP> <outputfile> [output file is optional] "
echo ""
exit
fi

appname="reconstructPar"
appflag="-noZero"

#set max jobs as value input for np

njobs=$1
#let njobs1=$njobs+1
echo "running $appname $appflag in pseudo-parallel mode on $njobs processors"

nsteps=`ls processor0 | wc -l`

#echo "nsteps= $nsteps"
#let nsteps=$nsteps1-1

nchunk=`echo $nsteps/$njobs+1 | bc`

#echo "nchunk = $nchunk"

#find max time

tmin=`ls processor0 | sort -nr | tail -1`
#echo "tmin = $tmin"
tmax=`ls processor0 | sort -nr | head -1`
#echo "tmax = $tmax"

echo "making temp dir"

tempdir="temp.parReconstructPar"
mkdir $tempdir

tstart=$tmin
p=p

for i in `seq $njobs`

do
nn=`echo $i*$nchunk | bc`
tstop=`ls processor0 | sed -n $nn$p`
if [ $i == $njobs ]
then
tstop=$tmax
fi

echo "Starting Job $i - reconstructing time = $tstart through $tstop"

`$appname $appflag -time "$tstart:$tstop" > $tempdir/output$tstop &`

let nn=$nn+1
tstart=`ls processor0 | sed -n $nn$p`
done
#sleep until jobs finish
#if number of jobs > njobs, hold loop until job finishes
until [ `ps -C $appname | wc -l` -eq 1 ];
do
n1=`ps -C $appname | wc -l`
n2=`echo $n1-1 | bc`
echo "$n2 running..."
sleep 10
done

#combine and cleanup

if [ -n "$2" ]
then
#check if output file already exists
if [ -e "$2" ]
then
echo "output file $2 exists, moving to $2.bak"
mv $2 $2.bak
fi

echo "cleaning up temp files"

for i in `ls $tempdir`
do
cat $tempdir/$i >> $2
done
fi

rm -rf $tempdir

echo "finished"