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Biological Interactions of Plants, Soils, and

Microbes

Chapter · December 2021

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 Chapter
Biological Interactions of Plants,
9 Soils, and Microbes

Devanand Maurya, Chayan Adhikari & Tinku Kumar

Department of Botany, Dr. Harisingh Gour Central University,
Sagar, Madhya Pradesh

Amit Jugnu Bishwas

Assistant Professor, Department of Botany, Dr. Harisingh Gour
Central University, Sagar, Madhya Pradesh

ABSTRACT
In interactions between plants and soil, microorganisms have a significant
role in ecological stability is contributed by the biogeochemical cycling of
elements. An emerging body of research is distinguishing the impacts that
root-associated microbial communities can have on plant fitness and growth.
Rocks and minerals are weathered by the activities of plants, which exude
various types of hormones, with a crucial role in the supply of organic matter
and the formation of soils. Plant-microbe interactions are the significant
establishment force for extensive spatial gradients in species abundance.
The positive response (a homogenizing force) and negative response (a
diversifying force) of virtual balance may contribute to detected latitudinal
(and altitudinal) diversity patterns. This chapter focuses on the interaction of
plants, soil, and microbes induced to integrate these changes to soil quality
indication to unified soil in the sustainable agriculture soil management
practices.
Keywords: Plants, Soil – Microbes, Interaction
INTRODUCTION
Although plant physiologists sometimes see the earth as a nutrition
supply to plants, it is indeed a complex ecosystem that hosts bacteria,
fungus, protists, and animals (Bonkowski, Villenave, & Griffiths,
2009; Müller, Vogel, Bai, & Vorholt, 2016). Plants exhibit a variety
 72 Plant and Soil Microbial Interactions: Theory and Practice

of interactions with the ecological potential of these soil-dwellings

(competitive, exploitative, neutral, commensal, mutualistic). Most
interaction researches have concentrated throughout the
contemporary plant science on mitigating harmful impacts like
herbivory and infection (Strange & Scott, 2005; Zhang, Lubberstedt,
& Xu, 2013) or attenuating abiotic stress conditions (Meena et al., 2017;
Yaish, Al-Lawati, Jana, Vishwas Patankar, & Glick, 2016). However,
the characterization of the favorable environmental interactions that
support plant development has also shown a long-standing interest.
In the second part of the 19th century, for example, both mycorrhizal
fungi and the nodulated legume bacteria are known as root symbionts
(Morton, 1981). The soil is the most essential element for plants and
their associated microorganisms, which play a key function in the
modification and creation of soil (Marschner & Rengel, 2012).
Plant-microbial interactions are a matter of debate several times
by scientists. They are closely associated with microbiologists,
agronomists, soil scientists, and botanists. Plant microbial interactions
can have an impact on crop productivity other than the question of
fundamental scientific study. But it has not been addressed much
earlier how the interaction between plant and microbial agents
influences numerous soil processes. The soil quality cannot be directly
measured, as a complex functional state, but the soil quality may be
determined by changes in soil characteristics known as soil quality
indicators, which are managed (Bouma, 2002). The soil has varied
characteristics created by the weathering of rocks and minerals
depending on the origin of the parent materials, temperature, and
vegetation. Soil carbon is obtained directly or indirectly from plants,
mostly through microbial activities that depend on carbon from the
roots and also through physical and chemical processes (Six,
Bossuyt, Degryze, & Denef, 2004).
These indicators represent measurable soil characteristics, which affect
the soil’s capability to fulfill cultivated or environmental activities and
are susceptible to changes in land use, management, and conservation
techniques. Soil quality research has traditionally concentrated
mostly on physical and chemical characteristics due to their easy
analytical methods (Larson & Pierce, 1991). One of the main focuses of
this chapter of study is to obtain a mechanical understanding of how
plants, soil, microorganisms interact with each other for their plant
development and surviving the adverse condition.
PLANT–SOIL INTERACTIONS
The soil is the nutrition supply for plants: it is a complex ecosystem that
accommodates different bacteria, fungus, protists, and animals. Plants
 Biological Interactions of Plants, Soils, and Microbes 73

show a variety of interactions with these soil micro-organisms covering

a wide variety of environmental possibilities, such as competitive,
exploitative, neutral, commensal, and mutualistic (Ratnadass,
Blanchart, & Lecomte, 2013). There were several interactions focused
on the improvement of the impacts of pathogens such as herbicides
and infection or the tempering of abiotic stresses by contemporary
plant science (Shoresh, Harman, & Mastouri, 2010). Even with the
long-term interest in characterization ecological interactions
positively boost plant development. The microbiota colonized in soil
with micro-organisms including Archaea, Bacteria, Fungi, and
viruses has important functions for host health and improvements.
The microbiome is assessed in its second genome as a connection with
plants. It also contributes to plant health, growth, appropriateness,
and production (Björkman et al., 2011). The rhizosphere, endosphere,
and phyllosphere have a particular microbial population with certain
environmental roles. The densities of the microbiome plant are larger
than the number of plant cells. They also include in better expressed
genes than the host cells (Hardoim et al., 2015).
PLANT-MICROBE INTERACTIONS
A range of phylogenetic groupings and other main working groups,
such as producers, consumers, and decomposers, are included among
the microorganisms that dwell in the soil. In each gram of soil, there are
exceptionally thousands of genomes and genetic diversity (Bardgett,
Freeman, & Ostle, 2008). Interactions among soil microbes and plants
span the range from mutualistic to pathogenic (Holland & Reynolds,
2003). Eventually, the soil microorganisms contribute to the bulk
of terrestrial vegetation and yearly requirement for the
decomponents for nutrients. In this sequence, the plant is the
main source of microbial breakdown, synthetically fixed carbon
(Gougoulias, Clark, & Shaw, 2014). Simultaneously, mutually
exclusively and competitive microorganisms and plants compete for
soil resources (Van Der Heijden, Bardgett, & Van Straalen, 2008).
SOIL–MICROBE INTERACTIONS
The soil microorganisms are chosen to produce the plant root
exudates, organic volatile carbon, and chemical rhizodeposition,
which flourish in a carbon-rich environment (Shrivastava,
Singhai, & Yadav, 2014; Somers, Vanderleyden, & Srinivasan, 2004).
Plant root exudates differ among plant species, hence the variations
in the rhizospheric microbiome are predicted in different plant species.
More recent findings have provided strong support for species-
specific plant microbiomes (Fiehn et al., 2008). The plant root
exudates can be
 74 Plant and Soil Microbial Interactions: Theory and Practice

formed by the microbial community. Root exudates are characterized

by different types of suckers, amino acids, organic acids, nucleotides,
flavonoids, antibacterial substances, and enzymes (Haas & Défago,
2005). In fig.1 show the dynamic interaction of plant, soil, and
microorganisms.

Fig. 1 Show the interaction of plant, soil, and microorganisms.

(After Richard Jacoby 2017)

SIGNIFICANCE OF THIS INTERACTION

Plants are more than separate beings from an ecological perspective
because they live together with the plant microbiota which affects
plant development and production. The microbial diversity of the
micro-biomass of soil and rhizosphere has been greatly understated,
with just 5% cultivated using existing techniques. (Mendes,
Garbeva, & Raaijmakers, 2013). Plants are required for the survival of
air, water, and nutrients, but plant health is based on biology beyond
survival and productivity. In soil circumstances with symbiotic,
mutualistic, and parasite microorganisms, the majority of terrestrial
plants have adjusted. Although plant pathology focused on the
parasite or harmful connections, it is well known for many years that
plants have a positive link to microbes. The most well-researched
interaction is one with a synergistic link between nitrogen-fixing
rhizobial bacteria and legumes. They produce nodules at the roots of
plants in the family of beans and peas. Their roots collect and make
nitrogen accessible to the plants. In fig.2 shows the significant role
of plants, soil, and microorganisms.
 Biological Interactions of Plants, Soils, and Microbes 75

Fig. 2 Show the significance of plants, soil, and microorganisms.

(After P.V. Bramhachar 2017)

Conclusion
The interactions with plants, soil, and are very complicated and
involve numerous processes and chemicals which enable some
microorganisms, including changes in physics and the presence of
various hosts, to recognize certain species and respond to one other
in a complex environment. Each soil quality indicator in this chapter
responds to shifting equations of plant-microbial interactions which
have been affected by crop management methods as labors, fertilizers,
and organic nutrients, changes in farming systems, etc. Now-a-days
attention has been moved into disclosing the basic mechanisms
affecting the ecology of plants, soils, and microorganisms. Basic
and strategic research should be conducted to increase our existing
understanding of microbial interactions in the plants, soil, and
microbes’ habitats to ensure sustainable plant production and
environmental quality.
References
1. Bardgett, R. D., Freeman, C., & Ostle, N. J. (2008). Microbial contributions
to climate change through carbon cycle feedbacks. The ISME journal, 2(8),
805-814.
2. Björkman, M., Klingen, I., Birch, A. N., Bones, A. M., Bruce, T. J.,
Johansen, T. J., . . . Smart, L. E. (2011). Phytochemicals of Brassicaceae in
plant protection and human health–Influences of climate, environment
 76 Plant and Soil Microbial Interactions: Theory and Practice

and agronomic practice. Phytochemistry, 72(7), 538-556.

3. Bonkowski, M., Villenave, C., & Griffiths, B. (2009). Rhizosphere fauna:
the functional and structural diversity of intimate interactions of soil
fauna with plant roots. Plant and Soil, 321(1), 213-233.
4. Bouma, J. (2002). Land quality indicators of sustainable land management
across scales. Agriculture, Ecosystems & Environment, 88(2), 129-136.
5. Fiehn, O., Wohlgemuth, G., Scholz, M., Kind, T., Lee, D. Y., Lu, Y., . .
. Nikolau, B. (2008). Quality control for plant metabolomics: reporting MSI‐
compliant studies. The Plant Journal, 53(4), 691-704.
6. Gougoulias, C., Clark, J. M., & Shaw, L. J. (2014). The role of soil
microbes in the global carbon cycle: tracking the below‐ground microbial
processing of plant‐derived carbon for manipulating carbon dynamics in
agricultural systems. Journal of the Science of Food and Agriculture, 94(12),
2362-2371.
7. Haas, D., & Défago, G. (2005). Biological control of soil-borne pathogens
by fluorescent pseudomonads. Nature reviews microbiology, 3(4), 307-319.
8. Hardoim, P. R., Van Overbeek, L. S., Berg, G., Pirttilä, A. M., Compant, S.,
Campisano, A., . . . Sessitsch, A. (2015). The hidden world within plants:
ecological and evolutionary considerations for defining functioning of
microbial endophytes. Microbiology and Molecular Biology Reviews, 79(3),
293-320.
9. Holland, J. M., & Reynolds, C. J. (2003). The impact of soil cultivation
on arthropod (Coleoptera and Araneae) emergence on arable land.
Pedobiologia, 47(2), 181-191.
10. Jacoby, R., Peukert, M., Succurro, A., Koprivova, A., & Kopriva, S. (2017).
The role of soil microorganisms in plant mineral nutrition—current
knowledge and future directions. Frontiers in plant science, 8, 1617.
11. Larson, W., & Pierce, F. (1991). Conservation and enhancement of soil quality.
Paper presented at the Evaluation for sustainable land management in
the developing world: proceedings of the International Workshop on
Evaluation for Sustainable Land Management in the Developing World,
Chiang Rai, Thailand, 15-21 September 1991.
12. Marschner, P., & Rengel, Z. (2012). Nutrient availability in soils
Marschner’s mineral nutrition of higher plants (pp. 315-330): Elsevier.
13. Meena, K. K., Sorty, A. M., Bitla, U. M., Choudhary, K., Gupta, P., Pareek,
A., . . . Gupta, V. K. (2017). Abiotic stress responses and microbe-mediated
mitigation in plants: the omics strategies. Frontiers in plant science, 8, 172.
14. Mendes, R., Garbeva, P., & Raaijmakers, J. M. (2013). The rhizosphere
microbiome: significance of plant beneficial, plant pathogenic, and
human pathogenic microorganisms. FEMS microbiology reviews, 37(5),
634-663.
15. Morton, J. F. (1981). Atlas of medicinal plants of Middle America: Bahamas to
Yucatan: Charles C. Thomas.
16. Müller, D. B., Vogel, C., Bai, Y., & Vorholt, J. A. (2016). The plant
microbiota: systems-level insights and perspectives. Annual review of
genetics, 50, 211-234.
 Biological Interactions of Plants, Soils, and Microbes 77

17. Ratnadass, A., Blanchart, É., & Lecomte, P. (2013). Ecological interactions
within the biodiversity of cultivated systems Cultivating biodiversity to
transform agriculture (pp. 141-179): Springer.
18. Shoresh, M., Harman, G. E., & Mastouri, F. (2010). Induced systemic
resistance and plant responses to fungal biocontrol agents. Annual review
of phytopathology, 48, 21-43.
19. Shrivastava, D., Singhai, A., & Yadav, R. (2014). Effect of lime and rice
husk ash on engineering properties of black cotton soil. Int. J. Eng. Res. &
Sci. & Technology, 3(2), 292-296.
20. Six, J., Bossuyt, H., Degryze, S., & Denef, K. (2004). A history of research
on the link between (micro) aggregates, soil biota, and soil organic matter
dynamics. Soil and tillage research, 79(1), 7-31.
21. Somers, E., Vanderleyden, J., & Srinivasan, M. (2004). Rhizosphere
bacterial signalling: a love parade beneath our feet. Critical reviews in
microbiology, 30(4), 205-240.
22. Strange, R. N., & Scott, P. R. (2005). Plant disease: a threat to global food
security. Annu. Rev. Phytopathol., 43, 83-116.
23. Van Der Heijden, M. G., Bardgett, R. D., & Van Straalen, N. M. (2008).
The unseen majority: soil microbes as drivers of plant diversity and
productivity in terrestrial ecosystems. Ecology letters, 11(3), 296-310.
24. Yaish, M. W., Al-Lawati, A., Jana, G. A., Vishwas Patankar, H., & Glick,
B. R. (2016). Impact of soil salinity on the structure of the bacterial
endophytic community identified from the roots of caliph medic
(Medicago truncatula). PLoS One, 11(7), e0159007.
25. Zhang, Y., Lubberstedt, T., & Xu, M. (2013). The genetic and molecular
basis of plant resistance to pathogens. Journal of Genetics and Genomics,
40(1), 23-35.

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