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Aoac2005 04
Aoac2005 04
4, 2013
T
he Assurance GDS® Escherichia coli O157:H7 culture method (1). For foods regulated by the U.S. Food and
(Assurance GDS) is an automated nucleic acid Drug Administration (FDA), the reference method used for
amplification assay that incorporates multiple levels of comparison was the FDA Bacteriological Analytical Manual
specificity to ensure highly accurate results. The method utilizes (BAM) method (2). All samples for both Assurance GDS and
proprietary probes and specific primers directed against a highly reference methods were enriched and then plated to selective/
conserved DNA sequence of E. coli O157:H7. Assurance GDS differential agars as described for the appropriate reference
also utilizes a proprietary device and reagents that concentrate method.
populations of target microorganisms and eliminate potential Foods were inoculated with E. coli O157:H7 to achieve
competitive microflora. The method is designed to be highly two levels, a low probability of detection (POD) level where
selective, and does not detect microorganisms that are potential fractional recovery was anticipated (PODC in the range of
cross-reactors in antibody-based assays, including E. coli O157 0.25–0.75) and a high level where predominantly positive
that are not H7 or nonmotile (NM), and other microorganisms results were expected (PODC of nearly 1.00). For each food,
that express an O157 antigen but are not E. coli O157:H7. The 20 replicate samples representing the low and five representing
Assurance GDS method was adopted AOAC Official Method the high contamination levels were analyzed by Assurance GDS
Final Action in 2007. and reference culture methods. Five uninoculated samples were
The proposed modification to the Assurance GDS is the also analyzed by each method.
addition of a larger sample size for testing 375 g sample sizes.
The 25 g sample size has conventionally been used for testing. Preparation of Inocula and Materials
The samples for this study were co-inoculated with E. coli calculated as the ratio of number positive (x) to the total number
O157:H7 and Salmonella. Both strains used as sources of tested (N). The dPOD values, which are the differences between
inocula were grown in Brain Heart Infusion broth for 18–24 h the two POD values, and the 95% confidence intervals on dPOD
at 35–37°C. For raw beef trim, raw ground beef, and raw values were also determined. If the confidence interval range
leaf lettuce, foods received inocula of stationary phase cells on dPOD does not contain a zero, then the two POD values are
estimated to achieve two seed levels: 0.2–2 CFU/25 g (low) statistically different.
and 5–50 CFU/25 g (high) when measured by most probable
number (MPN) at the time of sample analysis. AOAC Official Method 2005.04
After artificial contamination, all foods were held at 2–8°C Escherichia coli O157:H7 in Selected Foods
for at least 48 h to allow populations to stabilize. For raw beef Assurance GDS E. coli O157:H7
trim, raw ground beef, and lettuce, after seeding, the inoculated First Action 2005
foods were aliquoted into samples containing 25 g of food Final Action 2007
and additional inoculated food reserved for MPN analysis. Revised First Action 2012
These 25 g samples were randomly distributed among the
(g) Gel cooling block. adhesive film. Using a micropipettor, add 1 mL of incubated
(h) PickPen tips in box. sample to each sample well containing concentration reagent.
(i) Sealing film with adhesive backing. Avoid transferring food particles. A new pipet tip must be
(j) Dedicated pipets.—Eight-channel pipettor, capable of used for each sample. Cover each strip of sample wells with a
dispensing 30 µL; repeater pipettor; and micropipettors capable new adhesive film strip prior to adding samples to a new row.
of accurately dispensing 10 and 35 µL. Immediately return samples to incubator.
(k) Repeat pipettor tips.—0.5 and 10 mL. (e) Place sealed sample wells held in the sample wells
(l) Micropipettor tips.—Filter-barrier, volumes 20–200 and base atop the vortex mixer, B(d), and vortex at approximately
200–1000 µL. 900 rpm for 5–15 min. If necessary, adjust vortex speed to avoid
(m) Incubator.—Maintaining 42 ± 1°C. liquid contact with adhesive film. After vortexing is completed,
(n) Masticator.—Seward 400 (Seward Ltd, 12 Park Lane, remove sample wells base from vortex mixer.
Worthington, UK; www.seward.co.uk), or equivalent. (f) Carefully remove and discard an adhesive film strip from
one row of samples. Remove corresponding film strip from strip
C. Media and Reagents
of sample wells containing wash solution, (b)(1) or (b)(2).
D. Sample Enrichment Note: Wear new gloves prior to handling reagents.
(a) Prior to initial use, cool the gel cooling block, B(g), in
(a) Aseptically weigh 25 g sample into 225 mL prewarmed the freezer (–25 to –15°C) for 6 h. When not in use, the gel
(42 ± 1°C) mEHEC, C(a). Homogenize samples well with cooling block should be stored at –25 to –15°C. Between each
masticator, B(n). Incubate samples for 6.5–18 h at 42 ± 1°C. For use, return the gel cooling block to the freezer until it has turned
sprout irrigation water, incubate for 8–18 h. completely purple, indicating it is ready for use. This may take
(b) Aseptically weigh 375 g sample into 1500 mL prewarmed up to 2 h.
(42 ± 1°C) mEHEC. Homogenize samples well with masticator. (b) Remove amplification tubes, C(d), from foil pouch and
Incubate samples for 8–18 h at 42 ± 1°C. place the amplification tubes in the gel cooling block. Reseal
pouch.
E. Sample Preparation Protocol
(c) Open caps of amplification tubes in gel cooling block.
Transfer 30 µL of sample from the resuspension plate wells into
Note: Wear new gloves prior to handling reagents.
each amplification tube using the eight-channel pipettor and
(a) Mix concentration reagent, C(b), in a vortex mixer.
Transfer 20 µL to each of the required number of Assurance filter-barrier tip, B(j). Firmly press down on each amplification
GDS sample wells (one well/sample), B(e), using a repeater tube cap to close. Visually inspect each tube to ensure the cap
pipettor, B(j), and 0.5 mL pipet tip, B(k). Cover sample wells is securely sealed.
with adhesive film strips, B(i). (d) Invert the gel cooling block holding amplification
(b) Transfer 1.0 mL of wash solution, C(e), to additional tubes and shake with snapping motion to thoroughly mix tube
sample wells (one well/sample), using a repeat pipettor and contents.
10 mL pipet tip. Cover sample wells with adhesive film strips. (e) Place amplification tubes into Assurance Rotor-Gene,
(c) Transfer 45 µL of resuspension buffer, C(c), to the sample B(a), in sequential order, beginning with position No. 1. Start
wells in the resuspension plate, B(f), using a repeat pipettor and Rotor-Gene cycle, B(b). Refer to Assurance GDS user manual
0.5 mL pipet tip. Cover resuspension plate with adhesive film for detailed instructions on operating the Rotor-Gene.
strips. Note: The Assurance GDS Rotor-Gene must be started within
(d) From one strip of sample wells, (a), carefully remove 15 min after addition of the samples to the Amplification Tubes.
Feldsine et al.: Journal of AOAC International Vol. 96, No. 4, 2013 779
Table 2. Comparison of Assurance GDS E. coli O157:H7 to reference: Assurance GDS presumptive versus confirmed—POD
0.21 20 11 0.55 0.34, 0.74 11 0.55 0.34, 0.74 0.00 –0.28, +0.28
1.6 5 4 0.80 0.38, 0.96 4 0.80 0.38, 0.96 0.00 –0.45, +0.45
a
MPN = Most probable number is based on the POD of reference method test portions across laboratories using the AOAC MPN calculator, with 95%
confidence interval (CI).
b
N = Number of test portions.
c
x = Number of positive test portions.
d
PODCP = Candidate method presumptive positive outcomes divided by the total number of samples.
e
PODCC = Candidate method confirmed positive outcomes divided by the total number of samples.
f
dPODCP = Difference between the candidate method presumptive result and candidate method confirmed result POD values.
g
95% CI = If the confidence interval of a dPOD does not contain zero, then the difference is statistically significant at the 5% level.
h
Indicates the range of lowest to highest values, with a dash (–), between the two values.
780 Feldsine et al.: Journal of AOAC International Vol. 96, No. 4, 2013
Table 3. Comparison of Assurance GDS E. coli O157:H7 to reference: method comparison results—POD
0.21 20 11 0.55 0.34, 0.74 2 0.10 0.03, 0.30 0.45 +0.16, +0.65
indicated that, for all foods and surfaces analyzed, there was no Conclusions
statistical difference between the Assurance GDS presumptive
and the Assurance GDS confirmed (Table 2). For the low level It is recommended that the minor modification to AOAC
of ground beef, one sample was GDS negative, but confirmed Official Method 2005.04 be adopted revised First Action. The
positive. modification is the increased sample size testing of composite-
sized (375 g) raw beef trim, raw ground beef, and leaf lettuce.
The recovery of the Assurance GDS and reference methods
were compared. There were 48 samples that were positive by
References
Assurance GDS (assay positive and subsequently confirmed)
and 34 that were positive by reference culture. There were 42 (1) U.S. Department of Agriculture/Food Safety Inspection
samples that were negative by Assurance GDS and 56 that were Services, Microbiological Laboratory Guidelines. http://www.
negative by reference culture (Table 3). POD statistical analyses fsis.usda.gov/PDF/MLG_5_05.pdf (access date 1/5/12)
of the unmatched samples indicated that for all foods analyzed, (2) U.S. Food and Drug Administration, Bacteriological
Analytical Manual. http://www.fda.gov/Food/ScienceResearch/
there was no statistical difference between the Assurance GDS
LaboratoryMethods/BacteriologicalAnalyticalManualBAM/
presumptive and the Assurance GDS confirmed. Furthermore, ucm070080.htm (access date 1/5/12)
Assurance GDS results were not statistically different from the (3) Association of Analytical Communities (2012) Methods
reference culture method for the detection of E. coli O157:H7, Committee Guidelines for Validation of Microbiological
except for the low level of leaf lettuce. For the low inoculation Methods for Food and Environmental Surface, Appendix X-A,
Analysis of Contaminated Matrix, AOAC INTERNATIONAL,
level of leaf lettuce, Assurance GDS had statistically significant
Gaithersburg, MD
higher recovery than the reference method. The reference (4) Association of Analytical Communities (2012) Methods
method for leaf lettuce uses a rinse-off step of the lettuce leaves, Committee Guidelines for Validation of Microbiological
followed by incubation of the rinse material. By comparison, the Methods for Food and Environmental Surface, Appendix
Assurance GDS preparation methodology specifies mastication X-C, Calculation of POD and dPOD Values from Qualitative
Method Single Laboratory Data, AOAC INTERNATIONAL,
of the lettuce leaves and incubation of the entire sample. The Gaithersburg, MD
incubation of a rinsate compared to the entire sample may (5) Feldsine, P.T., Green, S.T., Lienau, A.H., Stephens, J., Jucker,
account for the lower recovery for the reference method. M.T., & Kerr, D.E. (2005) J. AOAC Int. 88, 1334–1348