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Schizophrenia in A Genomic Era A Review From The.1
Schizophrenia in A Genomic Era A Review From The.1
Schizophrenia is a common multigenic and debilitating discoveries of genetic loci associated with susceptibility to
neurological disorder characterized by chronic psychotic schizophrenia. Psychiatr Genet 30: 1–9 Copyright © 2019
symptoms and psychosocial impairment. Complex Wolters Kluwer Health, Inc. All rights reserved.
interactions of genetics and environmental factors Psychiatric Genetics 2020, 30:1–9
have been implicated in etiology of schizophrenia.
Keywords: schizophrenia, neurogenetics, neuropathology, neuroimmune,
There is no central pathophysiology mechanism, genomics, GWAS
diagnostic neuropathology, or biological markers have
a
been defined for schizophrenia. However, a number of Department of Biochemistry, University of Otago, Dunedin, New Zealand
and bWellington Regional Genetics Laboratory, Genetic Health Service New
different hypotheses including neurodevelopmental and Zealand, Wellington Regional Hospital, Wellington, New Zealand
neurochemical hypotheses have been proposed to explain
Correspondence to Mansour Zamanpoor, Wellington Regional Genetics
the neuropathology of schizophrenia. This review provides Laboratory, Wellington Regional Hospital, Wellington 6021, New Zealand
an overview of pathogenesis, genetic and environmental Tel: +6449185352; fax: +6443855822;
e-mail: mansour.zamanpoor@ccdhb.org.nz
etiologies to diagnosis and treatment insights in clinical
management of schizophrenia in light of the recent Received 7 March 2019 Accepted 27 September 2019
Copyright © 2020 Wolters Kluwer Health, Inc. Unauthorized reproduction of this article is prohibited.
2 Psychiatric Genetics 2020, Vol 30 No 1
activity in schizophrenia (Javitt et al., 2008; Brennand et Genetic factors that contribute to
al., 2011). schizophrenia
The heritability of schizophrenia was estimated to be
Induced pluripotent stem cells (iPSCs) have been
79%–81% by using meta-analysis of twin studies (Sullivan
used as disease-relevant cell types from early brain
et al., 2003; Lichtenstein et al., 2009; Hilker et al., 2018).
development to investigate the molecular and cellular
The high heritability also applies in a broader neuropsy-
underpinnings of schizophrenia (Brennand et al., 2011;
chiatric and schizophrenia spectrum disorders (Hilker
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Schizophrenia in a genomic era by Zamanpoor 3
Table 1 Overview of associated gene loci with schizophrenia including their method of discovery and function
Gene loci Function Discovery method Reference
DISC1 Neural development, proliferation, differentiation and brain Linkage studies Kamiya et al. (2005); Millar et al. (2005)
maturation, cAMP signaling
NRG1 Neuron development and differentiation. Gliogenesis, NMDAR Linkage studies Stefansson et al. (2002); Munafò et al.
pathway (2006)
AKT1 Neuronal connectivity and modulation Confirmed by GWAS Tan et al. (2008)
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ERBB4 Receptor tyrosine kinase NRG1, NMDAR pathway Linkage studies Benzel et al. (2007); Chang et al. (2018)
DTNBP1/CMYA5 Regulation of cAMP signal pathway and the BLOC-1 processes Confirmed by GWAS Weickert et al. (2004); Chen et al. (2011)
GABRB2 GABA signaling Linkage studies Liu et al. (2005); Chang et al. (2018)
GRIN2B Glutamate signaling, NMDAR pathway Linkage studies Hong et al. (2001); Ohtsuki et al. (2001);
Chang et al. (2018)
HTR2A Serotonin signaling Confirmed by GWAS Abdolmaleky et al. (2004)
IL1B Immune system Association studies Shirts et al. (2006)
NOTCH4 Neuron development Confirmed by GWAS Wei and Hemmings (2000)
NRXN1 Synapses Linkage studies Tam et al. (2009)
PDE4B Synapses Linkage studies Millar et al. (2005)
RELN Synapses Linkage studies Abdolmaleky et al. (2005)
RGS-4 Regulator of G-protein signaling Linkage studies Mirnics et al. (2001)
VMAT2 Vesicular monoamine transporter Linkage studies Richards et al. (2006)
For schizophrenia-associated loci discovered by GWAS see (Schizophrenia Working Group of the Psychiatric Genomics, 2014) and (Li et al., 2017).
controls (Marshall et al., 2017; Sriretnakumar et al., 2019). et al., 2011). A two-stage analysis of 51 695 individuals
Most CNVs involved in schizophrenia are unique and of European ancestry identified five novel schizophre-
rare in the population but confer significant risk for schiz- nia loci and two previously implicated loci (PCGEM1,
ophrenia (Gulsuner and McClellan, 2015; Marshall et al., TRIM26, CSMD1, MMP16, CNNM2-NT5C2, STT3A, and
2017; Kushima et al., 2018; Sriretnakumar et al., 2019). CCDC68-TCF4) at a genome-wide level of significance
Rare structural variants play a role in schizophrenia by (Ripke et al., 2011). Interestingly four of these loci con-
disrupting multiple genes such as NRXN1, APBA2, NRG1, tain MIR137 (microRNA 137) predicted targets that sug-
and CNTNAP2 that are involved in neurodevelopmental gest an implication of MIR137-mediated dysregulation
pathways (e.g. neuregulin and neurexin) related to syn- in schizophrenia etiology (Ripke et al., 2011). MIR137
aptic development and functions (Walsh et al., 2008; Tam plays a role in neuronal development by regulating neu-
et al., 2009). Several large-scale whole-genome schiz- ronal maturation and function (Ripke et al., 2011).
ophrenia association studies reported the detection of PGC conducted another GWAS with a substantially
CNVs that uncovered some schizophrenia susceptibility larger sample set, combining the Swedish national sam-
loci and also highlighted some aspects of schizophrenia ple set of 5001 cases and 6243 controls with the PGC1
pathophysiology (Tam et al., 2009; Marshall et al., 2017). GWAS dataset (PGC1 + SWE) (Ripke et al., 2013). The
GWAS interrogate the genome purely empirically and scan number of significant schizophrenia loci at genome-
millions of single nucleotide polymorphisms (SNPs) for wide significance was increased to 22 by this multi-stage
associations with schizophrenia using a case-control study meta-analyzed GWAS (Ripke et al., 2013). This GWAS
design (Henriksen et al., 2017). The Molecular Genetics meta-analysis highlighted the importance of larger stud-
of Schizophrenia (MGS) research group, namely Genetic ies for discovery of common genetic variants associated
Association Information Network, used two sample sets, with schizophrenia (Ripke et al., 2013).
one of European ancestry (1440 cases and 1469 controls) Another large multi-stage GWAS of schizophrenia was
and the other with African ancestry (1280 cases and 1000 conducted by PGC. A total of 36 989 cases and 113 075
controls) (Manolio et al., 2007). However few markers controls, including the primary PGC GWAS dataset
reached genome-wide significance for association with and the MGS samples, were included in the analysis
schizophrenia in the schizophrenia GWAS (Ripke et al., (PGC2) (Schizophrenia Working Group of the Psychiatric
2011). The combination of SNP data from several large Genomics Consortium, 2014). 128 SNPs covering 108
studies confirmed associations of schizophrenia with sev- defined loci including 83 novel loci were discovered
eral markers in the MHC region of chromosome 6, and at a genome-wide level of significance (Schizophrenia
in NRGN and TCF4 (Stefansson et al., 2009). MYO18B Working Group of the Psychiatric Genomics Consortium,
and ZNF804A were associated with schizophrenia by 2014). Recently, Li et al. (2017) performed a GWAS
GWAS (Purcell et al., 2009). Research groups of the schiz- including 7699 cases and 18 327 controls of Chinese
ophrenia Psychiatric GWAS Consortium (PGC) collabo- ancestry that identified four novel schizophrenia risk loci
rated to create a large schizophrenia sample set (Ripke (Li et al., 2017). A transancestral GWAS meta-analysis of
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4 Psychiatric Genetics 2020, Vol 30 No 1
Chinese individuals from the Li et al. (2017) study with ten brain tissues of patients with schizophrenia to inves-
PGC2 samples identified 30 new risk loci for schizophre- tigate the genes related to schizophrenia. Cerebellum
nia (Supplementary Table, Supplemental digital content tissue has been reported to be the most closely linked tis-
1, http://links.lww.com/PG/A231). This large molecular sue in brain and sought to play a role in the pathogenesis
genetic study of schizophrenia highlighted the power of schizophrenia. Bettella et al. (2018) reported significant
of GWAS with large sample sizes to find additional risk enrichment of schizophrenia associations among eQTLs
loci and indicated the existence of shared genetic risk in four non-CNS tissues including adipose tissue, epider-
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across populations (Schizophrenia Working Group of the mal tissue, lymphoblastoid cells, and blood.
hCywCX1AWnYQp/IlQrHD3i3D0OdRyi7TvSFl4Cf3VC4/OAVpDDa8KKGKV0Ymy+78= on 09/13/2023
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Schizophrenia in a genomic era by Zamanpoor 5
such as dopamine-induced activation of autoimmune 2004). The MHC region is the most associated region
T cells in the brain tissue and/or immune system (de la in GWAS of schizophrenia. This considerably strong
Fontaine et al., 2006). Several studies suggest the role of genetic evidence supports the immune hypothesis that
cytokines as a mediator of metabolic/brain changes asso- variation within immune genes contributes to schizo-
ciated with clinical symptoms of schizophrenia (Kronfol phrenia (Pouget et al., 2016). HLA class II, containing the
and Remick, 2000; Monji et al., 2009; Altamura et al., 2014; HLA-DR4 (DRB1*04) allele of the HLA-DRB1 gene, is
Gallego et al., 2018; Misiak et al., 2018). Elevated levels of the most frequently reported genetic allele in association
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proinflammatory markers and cytokines have been found with schizophrenia (Wright et al., 2001). Associated HLA
hCywCX1AWnYQp/IlQrHD3i3D0OdRyi7TvSFl4Cf3VC4/OAVpDDa8KKGKV0Ymy+78= on 09/13/2023
in the peripheral blood, cerebrospinal fluid and prefron- class II antigens or alleles include HLA-DRB1*0101 and
tal cortex neurons of schizophrenic patients (Altamura et HLA-DRB1*04 (*0401, *0403, *0405, and *0406) that
al., 2014; Malavia et al., 2017). Cytokines play a critical control antibody-mediated immune responses (Wright et
role in infectious and inflammatory processes by medi- al., 2001). HLA-DRB1, including the HLA-DR4 serotype,
ating between immune abnormalities and neurodevel- is associated inversely with schizophrenia (Watanabe et
opment (Altamura et al., 2014). Cytokines interact with al., 2009).
monoaminergic system such as dopamine, serotonin, and
glutamate, and the autonomic nervous system (Kim et al., Environmental factors that contribute to
2007; Altamura et al., 2014). Schizophrenia is associated schizophrenia
with an imbalance in inflammatory cytokines suggesting a Environmental risk factors play an important role in
possible target for pharmacological treatments (Altamura the development of schizophrenia (Caspi and Moffitt,
et al., 2014). The positive effect of non-steroidal anti-in- 2006). Schizophrenia has been associated with several
flammatory drugs to reduce psychotic symptom severity infectious agents and this has been supported by dif-
supports the possibility of inflammatory mechanisms ferent immunologic, epidemiologic, microbiologic, and
underlying schizophrenia pathogenesis (Malavia et al., neuropsychiatric studies (Yolken et al., 2000; Fatemi,
2017). This immune-based anti-inflammatory therapeu- 2005). Many infections have been associated with
tic approach opens interesting perspectives for immune schizophrenia, including influenza, rubella, herpes
therapy in schizophrenia (Müller et al., 2016). simplex virus (HSV), cytomegalovirus, poliovirus, and
toxoplasma gondii (Brown and Susser, 2002; Ross et al.,
Increased serum level of cytokines such as IL-6 in schizo-
2006; Brown and Derkits, 2010). Infections have been
phrenia suggests the implication of the adaptive immune
implicated as disrupters of fetal neurodevelopment
response and supports brain immune activation in schiz-
leading to brain and behavioral abnormalities (Brown
ophrenic patients (Altamura et al., 2014; Schwieler et al.,
and Derkits, 2010). Maternal HSV-2 IgG antibody lev-
2015). IL-6 plays a critical role by stimulation of B lym-
els are associated with a significantly increased risk of
phocyte proliferation through hyperactivation of humoral
schizophrenia in offspring (Buka et al., 2001; Brown
immunity that stimulates the conversion of the amino
and Derkits, 2010). Another study showed significant
acid tryptophan into kynurenic acid that acts as an antago-
elevation in risk of schizophrenic among offspring of
nist of glutamatergic NMDARs (Altamura et al., 2014; Hu
mothers who were seropositive for HSV-2 antibody
et al., 2015). Abnormal kynurenic acid levels are involved
(Buka et al., 2001; Brown and Derkits, 2010).
in the pathophysiology of schizophrenia (Schwieler et al.,
2015; Plitman et al., 2017). Neurotransmitter dysfunc- Schizophrenia development has been associated with
tions as a result of cytokine-induced neuroinflammation the birth season, and schizophrenia patients are more
through microglial activation, leads to the inflamma- likely to be born during the winter months (Torrey et al.,
tory process and neurodegeneration in schizophrenia 1997; Davies et al., 2003; Messias et al., 2007). It has been
(Aricioglu et al., 2016). hypothesized that this winter birth effect might be due
to the increased chance of the prenatal viral infections
Analysis of the network of protein-protein interactions or
during winter months (Fatemi et al., 2012). Childhood
interactome analyses demonstrated several immune-re-
viral infections have also been suggested to be associated
lated pathways schizophrenia interactome such as inter-
with schizophrenia by some population-based studies
leukins and natural killer cell signaling, NF-kB signaling,
(Khandaker et al., 2012; Nielsen et al., 2014; Birnbaum
and B cell receptor signaling, that are associated with
and Weinberger, 2017). There is evidence for the possi-
immune function and inflammation (Malavia et al., 2017).
ble effect of prenatal exposure to infections on fetal brain
The NF-kB signaling pathway has been implicated in
development (Ross et al., 2006; Clarke et al., 2009). This
schizophrenia as NF-kB pathway plays a role in immune
can influence brain development through several physi-
response regulation and also in synaptic plasticity and
ological and immunological processes including trigger-
memory (Roman-Blas and Jimenez, 2006; Snow et al.,
ing proinflammatory cytokine responses or by releasing
2014; Malavia et al., 2017).
stress hormones, producing hypoxia, hyperthermia, or
The HLA system is the most studied locus candidate malnutrition (Gilmore and Jarskog, 1997; Verdoux, 2004;
genes for association with schizophrenia (Gorwood et al., Ross et al., 2006).
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6 Psychiatric Genetics 2020, Vol 30 No 1
Many obstetric complications such as premature birth, from acute onset to an extended prodrome (Messias et
low birth weight, preeclampsia, rhesus incompatibility, al., 2007). The negative symptoms might be observed
and prenatal nutritional deficiency have been implicated about 5 years before the manifestation of the initial psy-
as early environmental risk factors for neurodevelop- chotic episode (Häfner et al., 1999). Recent advances in
mental conditions such as schizophrenia (Cannon et al., discovery of schizophrenia-associated loci together with
2002; St Clair et al., 2005; Kyle and Pichard, 2006; Ross the definition of distinct sets of schizophrenic pheno-
et al., 2006). There are inconsistent findings from several types are promising that the associated SNPs can be used
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studies exploring the relationship between schizophre- as potential biomarkers to assist the diagnosis of schizo-
hCywCX1AWnYQp/IlQrHD3i3D0OdRyi7TvSFl4Cf3VC4/OAVpDDa8KKGKV0Ymy+78= on 09/13/2023
nia and obstetric complications including hypertensive phrenia in the genomic era.
disorders of pregnancy and low birth-weight (Clarke and
Kelleher, 2017; Dachew et al., 2018). Meta-analysis of Treatment of schizophrenia
population-based association studies between low birth- There is not much known about the pathophysiology of
weight (<2500 g) and schizophrenia showed no significant schizophrenia and therefore successful treatments are
increase in the risk of developing schizophrenia among limited (Lewis and Levitt, 2002). There is no cure for
those with a low birth-weight compared to those within schizophrenia and the available symptomatic treatment
the healthy birth-weight range (Clarke and Kelleher, is only partially successful (Ross et al., 2006). Dopamine
2017). However, a recent meta-analysis showed that dysfunction is the core psychopathology of schizophrenia
there was 37% higher risk of developing schizophrenia and the development of novel treatment targets requires
in offspring exposed to maternal preeclampsia (relative consideration of the complex interactions between dopa-
risk = 1.37; 95% confidence interval: 1.08–1.72) (Dachew mine and other neurotransmitter systems (Yang and Tsai,
et al., 2018). 2017). The majority of schizophrenia treatment strategies
are aimed at blockade of the dopamine receptors in the
Advancing paternal age has been found as a risk fac- dopamine reward pathway in the central nervous system
tor for schizophrenia (Messias et al., 2007). It has been (Yang and Tsai, 2017).
suggested that epigenetic processes such as age-re-
lated imprinting errors and DNA methylation changes The positive symptoms can be managed by using the
in several brain-expressed imprinted genes contribute typical antipsychotic drugs (first generation) such as
to the effect of advanced paternal age on schizophre- chlorpromazine, haloperidol, and perphenazine (Jarskog
nia (Perrin et al., 2007; Petersen et al., 2011; Smith et al., et al., 2007). The typical antipsychotic drugs have shown
2013). Accumulated de-novo mutations in paternal sperm little impact on negative symptoms or cognitive impair-
have been also suggested to contribute to neurodevelop- ment in schizophrenia patients (Jarskog et al., 2007).
mental disorders in offspring (Janecka et al., 2017). The Atypical antipsychotic drugs (second-generation drugs)
link between advanced paternal age and schizophrenia such as clozapine or olanzapine have serotonin-dopa-
remains significant after controlling for possible con- mine antagonism that improve the psychotic symptoms
founders, including socioeconomic status, paternal psy- of schizophrenia by partially blocking dopamine recep-
chiatric morbidity, and maternal age (Janecka et al., 2017). tors (particularly D2 receptor) to prevent over-activity of
dopamine in the striatum (Blasi et al., 2011). Clozapine is
Diagnosis of schizophrenia primarily used in schizophrenia that is unresponsive to
Schizophrenia is defined as a heterogeneous clinical syn- at least two different antipsychotic drugs (Jarskog et al.,
drome and shares a common presentation with several 2007). Cognitive behavioral treatment is a recommended
other psychosocial disorders making diagnosis of schizo- therapy to help schizophrenia patients to lower the stress
phrenia difficult (Wong and Van Tol, 2003). To address its of psychotic symptoms by linking their distressed feelings
heterogeneity, schizophrenia is currently diagnosed as a and patterns of thinking (Jones et al., 2004). Advances in
disorder with subtypes. However, subtypes are based on pharmacogenomics and genetic findings in schizophrenia
several common clinical features that make the diagnosis have generated optimism about developing more effec-
imprecise (Keller et al., 2011). tive and specific treatments for schizophrenia (Yang and
Tsai, 2017).
Diagnosis of schizophrenia is based on the Diagnostic
and Statistical Manual of Mental Disorders. The patients Conclusion and perspectives
must have two or more of the defined symptoms for 1 Schizophrenia is a heterogeneous clinical syndrome with
month (American-Psychiatric-Association, 2013). These a high heritability. Genetic studies including gene map-
symptoms include delusions, hallucinations, disorgan- ping, linkage analysis, and GWAS have confirmed many
ized speech, grossly disorganized behavior or catatonic chromosomal regions may contain schizophrenia suscep-
behavior, or negative symptoms (such as affective flat- tibility loci. Many genes play a role each with small to
tening, alogia, avolition) (Keller et al., 2011; American- moderate effect sizes in schizophrenia. Findings of the
Psychiatric-Association, 2013). Onsets of schizophrenia recent GWAS studies confirmed the association of vari-
have been reported to be different between individuals ants within the MHC region with schizophrenia as the
Copyright © 2020 Wolters Kluwer Health, Inc. Unauthorized reproduction of this article is prohibited.
Schizophrenia in a genomic era by Zamanpoor 7
most significantly associated locus with schizophrenia. Brown AS, Susser ES (2002). In utero infection and adult schizophrenia. Ment
Retard Dev Disabil Res Rev 8:51–57.
This considerably strong genetic evidence for the impli- Buka SL, Tsuang MT, Torrey EF, Klebanoff MA, Bernstein D, Yolken R H (2001).
cating the MHC locus in schizophrenia pathophysiology Maternal infections and subsequent psychosis among offspring. Arch Gen
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I would like to thank Professor Tony Merriman and echol-o-methyltransferase (COMT) gene are associated with schizophrenia in
Irish high-density families. Mol Psychiatry 9:962–967.
Professor Ian Morison for their helpful discussion and Clarke M, Kelleher E (2017). SU57. Obstetric complications and schizophre-
advice. nia—systematic review and meta-analysis update. Schizophrenia Bulletin 43
(Suppl 1): S182.
Clarke MC, Tanskanen A, Huttunen M, Whittaker JC, Cannon M (2009). Evidence
Conflicts of interest for an interaction between familial liability and prenatal exposure to infection in
There are no conflicts of interest. the causation of schizophrenia. Am J Psychiatry 166:1025–1030.
Dachew BA, Mamun A, Maravilla JC, Alati R (2018). Association between hyper-
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