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Exploring The Mechanism of Er Zhi Wan For The Treatment of Iga Nephropathy Based On Network Pharmacology
Exploring The Mechanism of Er Zhi Wan For The Treatment of Iga Nephropathy Based On Network Pharmacology
HSOA Journal of
Alternative, Complementary & Integrative Medicine
Research Article
Exploring the Mechanism of Conclusion: Er-zhi wan acts on gene targets such as AKT1, IL6 and
TNF mainly through effective components such as quercetin and
luteolin, and plays a role in treating IgAN through signal pathways
Er-zhi wan for the Treatment such as IL-17 and TNF. It has the characteristics of synergistic effect
of multi-components, multi-pathways, multi-targets and multi-path-
of IgA Nephropathy Based on ways.
Xue-Xia Li1,2*, Li-Na Lai1, Jun-Tao Zhang1, Xiao-Ying Ding1, Li- IgA Nephropathy (IgAN) refers to a type of disease in which im-
Fang Yang1 and Wan-Jun Lu1 mune complexes, mainly immunoglobulin A, deposit in the glomer-
ular mesangium, leading to hematuria, with or without proteinuria.
Department of Nephropathy, Zhuhai Hospital of Integrated Chinese and
1
It is the most common primary glomerular disease worldwide [1]. Its
Western Medicine, Zhuhai, Guangdong, China
pathological mechanism is not clear and there is no specific treatment
State Key Laboratory of Quality Research in Chinese Medicine, Macau
2
for it. Therefore, exploring its pathogenesis and searching for its ef-
University of Science and Technology, Macau, China
fective treatment are important. There is no specific disease name for
IgAN in Traditional Chinese Medicine (TCM). It is often classified as
Abstract a disease category such as bloody gonorrhea, edema, urine turbidity,
Objective: To explore the mechanism of Er-zhi wan for the treatment
etc. The overall pathogenesis of IgAN is based on deficiency and ex-
of IgAN based on network pharmacology. cess, with deficiency mainly characterized by Qi deficiency and Yin
deficiency. The symptoms are mainly external sensations, damp heat,
Methods: The effective components and protein targets of Er zhi and blood stasis. Syndrome differentiation types are mainly liver and
wan were extracted by TCMSP and regulated as gene targets by
kidney deficiency, Yin deficiency and excessive fire. In terms of treat-
Uniprot database. Then, the network of Er zhi wan, effective com-
ponents and gene targets was constructed by Cytoscape 3.7.1. Dis-
ment, the classic formula Erzhi Pill and Zhibai Dihuang Pill are often
ease targets of IgAN were collected using Genecards and DisGeN- used to nourish Yin and reduce fire.
ET, and after the intersection gene targets of drugs and diseases
Erzhi Pill originates from the “Fu Shou Jing Fang”, composing
were obtained, PPI analysis was performed using STRING11.5 da-
tabase, and the PPI network map was constructed to clarify the core
of Ligustrum lucidum and Eclipta grandiflora. It has the effects of
gene targets. Subsequently, GO function analysis and KEGG path- nourishing the liver and kidney, nourishing Yin and blood. Erzhi Pill
way enrichment analysis were performed using Metascape platform. is one of the most commonly used clinical combinations for kidney
diseases. Clinical studies suggest that Erzhi Pill has good therapeu-
Results: A total of 21 effective components were screened out for Er
tic effects on IgAN of liver and kidney Yin deficiency type and Qi
zhi wan, and 193 gene targets were obtained. The number of gene
targets for IgAN disease was 1743, and there were 117 overlapping
Yin deficiency type. It can improve patients’ symptoms, clinical in-
gene targets between them. The core effective components such dicators, and immune function. Due to the characteristics of multiple
as quercetin, luteolin, kaempferol, β-sitosterol and robinin were ob- components, multiple targets, multiple pathways, mutual coordina-
tained. The potential core gene targets were mainly AKT1, IL6, TNF, tion, and systematic regulation of TCM, using traditional methods to
CASP3, VEGFA, etc. Potential targets are mainly concentrated in study TCM is difficult to reflect systematicity. It is difficult to scien-
biological processes such as response to oxidative stress, response tifically explain the pharmacological material basis of TCM formulas.
to hypoxia, response to reactive oxygen species, and signaling path- Thus, the mechanism of Erzhi Pill’s action on kidney disease is still
ways such as cancer, lipid and atherosclerosis, fluid shear stress unclear, which limits its widespread clinical application. Therefore,
and arteriosclerosis, bladder cancer, IL-17 and TNF. this article explores the main effective ingredients, target genes, and
pathways of Erzhi Pill in the treatment of IgAN through data mining,
*Corresponding author: Xue-Xia Li, Department of Nephropathy, Zhuhai Hospi- further clarifying the mechanism of action of Erzhi Pill in the treat-
tal of Integrated Chinese and Western Medicine, Zhuhai, Guangdong, China, Tel: ment of IgAN for the promotion and application of TCM.
+86 15018342882; E-mail: sitalisa@163.com
Methods
Citation: Li X-X, Lai L-N, Zhang J-T, Ding X-Y, Yang L-F, et al. (2023) Exploring
the Mechanism of Er-zhi wan for the Treatment of IgA Nephropathy Based on Mining of effective components and gene targets in erzhi
Network Pharmacology. J Altern Complement Integr Med 9: 420.
pills
Received: November 10, 2023; Accepted: November 20, 2023; Published: No-
vember 27, 2023 In the pharmacology database and analysis platform of tradition-
al Chinese medicine system [2] (TCMSP, http://lsp.nwu.edu.cn/tcm-
Copyright: © 2023 Li X-X, et al. This is an open-access article distributed under sp.php) Input two traditional Chinese medicines from the Erzhi Pill
the terms of the Creative Commons Attribution License, which permits unrestrict-
formula: Ligustrum lucidum and Eclipta grandiflorum. Use oral bio-
ed use, distribution, and reproduction in any medium, provided the original author
and source are credited. availability (OB) ≥ 30 and drug like index (DL) ≥ 0.18 as screening
Citation: Li X-X, Lai L-N, Zhang J-T, Ding X-Y, Yang L-F, et al. (2023) Exploring the Mechanism of Er-zhi wan for the Treatment of IgA Nephropathy Based on Network
Pharmacology. J Altern Complement Integr Med 9: 420.
• Page 2 of 6 •
criteria to screen their effective ingredients. Subsequently, protein tar- grandiflora, namely luteolin and quercetin, as shown in table 1. Ex-
gets of active ingredients were obtained through the TCMSP platform clusion (20S) -24-ene-3 β, 20-diol-3-acetate, butanolin diglucoside.
and inputted into the Uniprot database [3] ( https://www.uniprot.org/) There were no corresponding protein targets for the four active in-
Standardize as gene targets, merge the obtained gene targets and re- gredients, namely syringarenol diglucoside_qt, Lucidresculine D,
move duplicate values to obtain the final gene target. and Olitoriside. A total of 434 protein targets were obtained, and they
were input into the Uniprot database for standardization. After remov-
Construction of erzhi pill TCM effective components gene ing duplicate values, 193 gene targets for the active ingredients of
target network diagram Erzhi Pill were ultimately obtained.
Organize its active ingredients and gene targets, then import them Herbal Med- Active Ingre-
MOL ID Label OB/% DL
into Cytoscape 3.7.1 software to construct a network diagram of icine dient
TCM, active ingredients, and gene targets for Erzhi Wan, visualizing Ligustrum
its pharmacological mechanism and clarifying its core effective ingre- lucidum、
MOL000006 GY1 luteolin 36.16 0.25
dients. Eclipta
grandiflora
Mining of IgAN disease gene targets Ligustrum
lucidum、
MOL000098 GY2 quercetin 46.43 0.28
Applying the GeneCards database [4] (https://www. Genecards. Eclipta
org), DisGeNET database (https://www.disgenet.org/) Obtain disease grandiflora
gene targets for IgAN, and use “IgA Nephropathy”, “IgA Nephritis”, MOL000358 NZZ1
Ligustrum
beta-sitosterol 36.91 0.75
and “IgAN” as search keywords. Merge the disease gene targets ob- lucidum
tained from two disease databases and delete duplicate values to ob- MOL000422 NZZ2
Ligustrum
kaempferol 41.88 0.24
tain the final disease gene targets. lucidum
Ligustrum
Mining of Intersection Gene Targets between Erzhi Pill MOL004576 NZZ3
lucidum
taxifolin 57.84 0.27
Ligustrum lucidumoside
MOL005147 NZZ5 54.41 0.47
Import Erzhiwan and IgAN gene targets into the online platform lucidum D_qt
Importing intersection gene targets into the Metascape database MOL002975 MHL3
Eclipta
butin 69.94 0.21
[5] (http://metascape.org/gp/index.html) Conduct gene target enrich- grandiflora
Eclipta demethylwede-
Effective ingredients and gene targets of Erzhi pill MOL003402 MHL7
grandiflora lolactone
72.13 0.43
Through the TCMSP database, a total of 167 active ingredients MOL003404 MHL8
Eclipta
wedelolactone 49.6 0.48
were found in Erzhi Pill. Using OB ≥ 30% and DL ≥ 0.18 as screening grandiflora
conditions, 21 active ingredients were ultimately obtained, includ- Table 1: Active ingredients of Erzhi Pill.
ing 2 common active ingredients in Ligustrum lucidum and Eclipta
J Altern Complement Integr Med ISSN: 2470-7562, Open Access Journal Volume 9 • Issue 9 • 100420
DOI: 10.24966/ACIM-7562/100420
Citation: Li X-X, Lai L-N, Zhang J-T, Ding X-Y, Yang L-F, et al. (2023) Exploring the Mechanism of Er-zhi wan for the Treatment of IgA Nephropathy Based on Network
Pharmacology. J Altern Complement Integr Med 9: 420.
• Page 3 of 6 •
Mining and PPI network construction of intersection gene Figure 3: PPI diagram of intersection gene targets.
targets between erzhiwan and IgAN
The gene targets (193) and IgAN disease gene targets (1743) ob- Gene Targets Degree Betweenness Centrality Closeness Centrality
tained through screening were inputted into the WeChat online map- AKT1 83 0.11337182 0.78873239
ping platform to obtain the Venn map (Figure 2). At the same time, IL6 75 0.04658224 0.74172185
intersection gene targets were screened through Excel, resulting in a TNF 74 0.03691461 0.72727273
total of 117 gene targets for the treatment of IgAN with Erzhi Pill. CASP3 73 0.03632742 0.72727273
Import the obtained intersection gene targets into the STRING11.5 VEGFA 72 0.02328299 0.71794872
database for PPI analysis between targets and visualize them to obtain Table 3: Core gene targets and related data in intersection gene targets.
a PPI network diagram, as shown in figure 3. The larger the circle and
darker the color in the diagram, the greater the influence of the target. GO functional enrichment analysis and KEGG pathway
Using node connectivity (degree) as the screening criteria, select the enrichment analysis
top 5 targets with the highest degree to identify their core gene targets,
Through the Metascape database, GO functional enrichment anal-
namely AKT1, IL6, TNF, CASP3, and VEGFA. Please refer to table ysis and KEGG pathway enrichment analysis were conducted on
3 for details. the intersection gene targets. The top 20 with smaller P values were
J Altern Complement Integr Med ISSN: 2470-7562, Open Access Journal Volume 9 • Issue 9 • 100420
DOI: 10.24966/ACIM-7562/100420
Citation: Li X-X, Lai L-N, Zhang J-T, Ding X-Y, Yang L-F, et al. (2023) Exploring the Mechanism of Er-zhi wan for the Treatment of IgA Nephropathy Based on Network
Pharmacology. J Altern Complement Integr Med 9: 420.
• Page 4 of 6 •
selected based on the size of the P value, and visualized through the to prevent and treat infection, control blood pressure, administer suf-
online mapping platform of Microbioinformatics, as shown in fig- ficient levels of renin angiotensin aldosterone system(RAAS) block-
ures 4 and 5. The potential therapeutic targets of Erzhi Pill for IgAN ers, control protein and salt intake, avoid fatigue and use nephrotoxic
include biological processes such as response to oxidative stress, drugs, quit smoking, control metabolic syndrome, and regularly fol-
response to hypoxia, and response to reactive oxygen species; The low up. There is a lack of specific treatment methods. TCM has good
action pathways mainly focus on cancer pathway, lipid and athero- therapeutic effects on IgAN. In the field of kidney disease, Erzhi Pill
sclerosis signaling pathway, fluid shear stress and atherosclerosis can be used for chronic nephritis, hematuria, lupus nephritis, purpura
pathway, bladder cancer pathway, IL-17 signaling pathway, TNF sig- nephritis, chronic kidney failure and other diseases [7], with anti-in-
naling pathway, etc. flammatory, antioxidant, immune regulatory and other pharmacologi-
cal effects. Basic research [8] also suggests that Erzhi Pill extract can
regulate the expression of podocyte membrane protein CD2AP and
podpcin in rats with diabetes nephropathy, protect podocytes and then
repair renal function.
PPI analysis shows that the core targets of Erzhi Pill in treating
IgAN are mainly AKT1, IL6, TNF, CASP3, VEGFA, etc. Research
Figure 5: Enrichment Analysis of KEGG Pathway of Intersection Gene
Target. has shown that the absence of AKT1 can exacerbate azotemia and
kidney damage such as tubular injury, renal fibrosis, and glomerulo-
sclerosis by increasing renal tubular cell apoptosis and inflammatory
Discussion response during renal ischemia-reperfusion. IL-6 and TNF, as inflam-
matory cytokines, can participate in the occurrence and development
IgAN is the most common primary glomerulopathy in the world. of IgAN by promoting mesangial cell proliferation, abnormal pro-
The incidence rate of IgAN among adults in the world is at least duction of mesangial matrix, and inducing inflammatory responses
2.5/100000 per year, and it is more common among Asian people. In in podocytes and renal tubular cells [15]. VEGFA, as a key media-
China, IgAN accounts for 30-40% of primary glomerulopathy, and tor of angiogenesis, is mainly expressed and secreted in podocytes
20-40% of IgAN patients progress to end-stage renal disease (ESRD) and renal tubular epithelial cells. Its abnormal expression can lead to
within 10-20 years after diagnosis [6]. Numerous studies have point- many kidney diseases related to glomerular injury [16,17]. CASP3 is
ed out that IgAN is caused by multiple factors such as genes, immu- an important mediator of inflammatory cell apoptosis, and its lack of
nity, and environment, but the specific pathogenesis is still unclear. At expression can lead to the deposition of immune complexes contain-
present, the most basic treatment mode for IgAN in clinical practice is ing IgA and complement 3 in the cell matrix and mesangial regions,
J Altern Complement Integr Med ISSN: 2470-7562, Open Access Journal Volume 9 • Issue 9 • 100420
DOI: 10.24966/ACIM-7562/100420
Citation: Li X-X, Lai L-N, Zhang J-T, Ding X-Y, Yang L-F, et al. (2023) Exploring the Mechanism of Er-zhi wan for the Treatment of IgA Nephropathy Based on Network
Pharmacology. J Altern Complement Integr Med 9: 420.
• Page 5 of 6 •
J Altern Complement Integr Med ISSN: 2470-7562, Open Access Journal Volume 9 • Issue 9 • 100420
DOI: 10.24966/ACIM-7562/100420
Citation: Li X-X, Lai L-N, Zhang J-T, Ding X-Y, Yang L-F, et al. (2023) Exploring the Mechanism of Er-zhi wan for the Treatment of IgA Nephropathy Based on Network
Pharmacology. J Altern Complement Integr Med 9: 420.
• Page 6 of 6 •
19. Biswas PS (2018) IL-17 in Renal Immunity and Autoimmunity. J Immunol 21. Matsumoto K, Kanmatsuse K (2003) Interleukin-17 stimulates the release
201: 3153-3159. of pro-inflammatory cytokines by blood monocytes in patients with IgA
nephropathy. Scand J Urol Nephrol 37: 164-171.
20. Lin JR, Wen J, Zhang H, Wang L, Gou FF, et al. (2018) Interleukin-17
promotes the production of underglycosylated IgA1 in DAKIKI cells. Ren 22. Lousa I, Reis F, Santos-Silva A, Belo L (2022) The Signaling Pathway
Fail 40: 60-67. of TNF Receptors: Linking Animal Models of Renal Disease to Human
CKD. Int J Mol Sci 23: 3284.
J Altern Complement Integr Med ISSN: 2470-7562, Open Access Journal Volume 9 • Issue 9 • 100420
DOI: 10.24966/ACIM-7562/100420
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