Professional Documents
Culture Documents
ORGANIC CHEMISTRY
111CHEM-3
for
Health-Science Students
Topics to be Covered:
Chapter 1: Introduction to Organic Chemistry
Chapter 2: Alkanes & cycloalkanes
Chapter 3: Alkenes & dienes
Chapter 4: Alkynes
Chapter 5: Benzene and Aromatic compounds
Chapter 6: Alcohols, Phenols and Ethers
Chapter 7: Aldehydes & Ketones
Chapter 8: Carboxylic acids & Amines
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Evaluation
• Med-term Exam: 25 %
• Home works and Quizzes: 10 %
• Laboratory: 25 %
• Final Exam: 40 %
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Chapter 1
What is organic chemistry?
• The chemistry of living things.
• Since the chemistry of living things is based on carbon, the chemistry of carbon
compounds has come to be known as organic chemistry:
The study of the structure, properties, composition, reactions, and
preparation of carbon-containing compounds.
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Chapter 1: Introduction
Atomic Orbitals: Are the space around the nucleus that occupied by electrons.
The most common orbitals in organic chemistry are: s-orbitals and p-orbitals
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Chapter 1: Introduction
Covalent bond: The forces of attraction between two atoms which are sharing
electrons to obtain a stable outer shell.
There are two types of covalent bond: sigma bond (σ) & pi-bond (π)
(1) sigma bond (σ) : Involves the overlap of two atomic orbitals head-to-head in one
position such as:
(a) two s-orbitals:
Chapter 1: Introduction
(2) pi-bond (π): Involves the overlap of parallel p-orbitals at both lobes.
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Chapter 1
All single bonds are σ bonds;
All double bonds are made up of one σ bond and one π bond;
All triple bonds are made up of one σ bond and two π bonds.
There are three types of carbon backbones:
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Hybridization
When carbon atoms form bonds with each other, we describe the
resulting bonds using hybrid orbitals, which are formed by mixing
(hybridizing) the carbon’s atomic orbitals.
What is Hybridization?
Is a mathematical model that helps us to rationalize the bonding
in organic molecules.
It means Mixing of atomic orbitals to give hybrid orbitals.
Sp3-hybridization:
Electronic Configuration of Carbon atom:6C (ground state)
When carbon atoms bond to 4 other atoms, the 2s orbital and all three 2p orbitals
in the valence shell combine to produce four sp3 hybrid orbitals
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In order to get as far away from each other as possible, the four sp3 orbitals are
arranged around the central carbon atom, in a tetrahedral shape with bond angles
of 109.5°.
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Q2.
(a) Alcohol, ketone, aldehyde and ether
(b) Amide, ketone, alcohol and carboxylic
(c) Aldehyde, alcohol and ester
(d) Carboxylic acid, ether and aldehyde
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Chemical Formulas
A chemical formula is an expression that states the number and type of atoms
present in a molecule of a substance, and can be represented using:
(1) Molecular formula: which describe the kinds and numbers of each atom in a
molecule.
e.g.: CH4, C3H8, C2H6O
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Practice:
Q.1: Draw acceptable condensed structures and bond-line formulas associated with the
following expanded structural formulas.
Q.2: Draw an acceptable expanded structure and bond-line formula for the molecule:
CH3CH2CH2OH
Q.3: Draw an acceptable expanded structure and bond-line formula for the molecule:
(CH3)3CCH2CH(CH3)CH3 , CH3CH2CH(CH3)2
Isomers:
Are different compounds with
the same molecular formula
but have a different structural
formulas.
Structural isomerism: In this type the atoms of the molecule are linked in a different order.
There are three types of structural isomerism: -
(1) Chain isomerism:
Isomers arise because of the possibility
of branching in carbon chains.
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Example: C3H7OH
(3) Functional group isomerism: the isomers that contain different functional
groups are belong to different families of compounds.
Example: C3H6O
aldehyde
ketone
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Chapter 2
Alkanes
Alkanes are commercially important
as fuels, solvents and oils.
Structure of Alkanes:
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Chapter 2
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Chapter 2
The First 20 Straight-Chain Alkanes
(b) If more than one different chains are of equal length, choose the one with the
greater number of branches as the parent.
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Step 3: Substituents :
Identify the substituent groups attached to the parent chain.
CH3- : methyl
Example: CH3-CH2- : ethyl
Br : bromo
Cl : chloro
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Examples:
(1) Alkyl group: is an alkane with a hydrogen removed from one bond (an alkane
minus H atom).
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Note:
• Iso- is part of the alkyl group name
and is used for alphabetizing.
• sec- and tert- are not included in the
alphabetical order.
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Examples:
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Common names of alkanes make use of prefixes, such as iso-, and neo-.
The prefix iso- is commonly given to 2-methyl alkanes. In other words, if there is methyl group
located on the second carbon of a carbon chain, we can use the prefix iso-.
The prefix neo- refers to a substituent whose second-to-last carbon of the chain is
trisubstituted (has three methyl groups attached to it).
The prefix will be placed in front of the alkane name that indicates the total number of
carbons.
Examples:
Isobutane which is the same as 2-methylpropane
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Chapter 2
Isopentane which is the same as 2-methylbutane
Practice:
Q.1: What is the common name of the following compound?
Q.2: 3-ethyl-2,3-dimethylpentane, has how many carbon atoms in its longest continuous
carbon chain?
(a) 2 (b) 3 (c) 4 (d) 5
Q.4: How many carbon atoms are present per molecule in the compound?
5-Ethyl-4-isopropyl-2,3,6-trimethylnonane
(1) Identify the number of carbons in the ring and prefixing the alkane name with
cyclo.
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(3) If the substituent has a greater number of carbons, then use the alkyl chain as the
parent and the cycloalkane as a cycloalkyl- substituent
(4) When dealing with cycloalkanes with more than two substituents, start numbering with
a substituted carbon so that the substituted carbons have the lowest numbers (minimum
sum).
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Examples:
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Chapter 2
(1) Alkanes containing up to 4 carbon atoms are gases (used as heating fuels),
pentane to heptadecane (C5 – C17) are liquids (used to make Gasoline, Diesel
and Jet fuels). The higher alkanes from C18 and higher are waxy solids (used as
fuel oil, Lubricating oil and as Paraffin wax).
(2) Alkanes are nonpolar, so they have weak intermolecular forces, low melting
points, and low boiling points.
Melting points and Boiling points of alkanes increase as the number of
carbons increases (generally, increase with molecular weight), due to
increased surface area.
Branched chain alkanes have lower boiling points than the straight chain
(generally, branching decrease boiling point).
(3) Solubility: Alkanes and cycloalkanes are insoluble in water.
Chapter 2
Isomerism in Alkanes:
Constitutional (Structural): Example 1: Butane and 2-methylpropane (C4H10) are:
constitutional isomers (chain isomers);
different compounds and have different physical and chemical
properties.
Their boiling points, for example, differ by approximately 11°C.
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Chapter 2
Chapter 2
(3) Substitution reactions: occur when an atom (or group) from an added reagent
substitutes for one in the reactant.
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Chapter 2
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Chapter 2
QUESTIONS
Q1. Alkanes whose carbon atoms are joined in rings are called ………………..
Q6. What is the IUPAC name for each of the following cycloalkanes?
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Chapter 3
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Alkenes
Chapter 3
Alkenes contain C, H atoms and single and double bonds (unsaturated hydrocarbons).
Step 1: Number the longest carbon chain that contains the double bond in the direction that
gives the carbon atoms of the double bond the lowest numbers.
Step 2: Indicate the location of the double bond by the number of its first carbon.
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Chapter 3
Step 3: In branched or substituted alkenes the double bond takes priority over other
substituents in an alkene.
Examples:
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Cycloalkenes
Chapter 3
Are cyclic unsaturated hydrocarbons that have one or more carbon—carbon double
bonds.
Naming cycloalkenes:
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Chapter 3
Is similar to naming alkenes, except that you number the ring so that the
double bond is between C1 and C2.
Examples:
4-ethyl-1-methylcyclohexene
The names of the following alkenyl groups are used in IUPAC nomenclature of
cycloalkenes and cycloalkanes:
Examples:
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Chapter 3
Geometrical isomerism in Di-substituted alkenes
Examples:
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Chapter 3
(c) CH3CH2CH=CHCH3 : (d) cis-trans isomers of 3-Hexene:
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Chapter 3
Reactions of Alkenes
(A) Electrophilic addition reactions:
(1) Hydrohalogenation of Alkenes:
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Chapter 3
Bromine (Br2) and chlorine (Cl2) add rapidly to alkenes to yield 1,2-dihalides (vicinal dihalides).
Chapter 3
(B) Hydrogenation of Alkenes:
Addition of hydrogen to alkenes in the presence of a metal catalyst (platinum, palladium, or
nickel).
Example:
Unsaturated oils with C - C double bonds are healthier than saturated fats with no double bonds.
Why does the food industry hydrogenate oils? The reasons relate to texture and shelf life.
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Glycol formation (Bayer's test): Alkenes can easily be oxidized by alkaline solution
of potassium permanganate (KMnO4) to give glycols:
Chapter 3
Types and Stability of Carbocation
A carbocation: is molecule in which a carbon atom bears three bonds and a positive charge.
Types of carbocations:
(1) Alkylic carbocations: in which an alkylic carbon bears the positive charge.
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Chapter 3
(2) Allylic carbocations: in which an allylic carbon bears the positive charge.
(Allylic: means next to a carbon-carbon double bond).
(3) Benzylic carbocations: in which a carbon attached to a benzene ring bears the
positive charge.
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Chapter 3
Stability of carbocations:
The stability of carbocations increases as the number of alkyl groups on the
positively-charged carbon atom increases.
The order of carbocation stability is :
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Chapter 3
Problem 1:
Problem 2:
Solution: a = d > b = c
Chapter 3
The rule for predicting the predominant product:
Markovnikov's rule:
(In addition of HX to alkenes, H bonds to the carbon with more hydrogens and the
X bonds to the carbon with fewer hydrogens)
Example 1:
Example 2:
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Chapter 3
In case if both carbon atoms of the double bond have the same number of hydrogens
or alkyl groups a mixture of addition products results:
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Chapter 3
Dienes: Are alkenes containing two double bonds, the suffix is diene.
Dienes are classified into three classes:
(1) Conjugated Dienes: In which
the double bonds and single
bonds are alternative (double –
single – double – single ….)
(2) Non-conjugated Dienes
(Isolated Dienes): In which the
double bonds are separated
from each other.
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Chapter 3
Practice:
Q1. Draw the structure for each compound.
a. 2-methyl-2-pentene b. 2,3-dimethyl-1-butene
c. 1-Methylcyclohexene d. 5-Methyl-1-hexene
Q2. Complete the following reactions
Q4. What is the IUPAC name for each of the following compounds?
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Chapter 4
Alkynes
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Chapter 4
Alkynes:
Are hydrocarbons with one or more CC bond.
The triple bond in alkynes have one and two bonds between two C atoms.
Ethyne (acetylene) is a reactive alkyne: HCCH.
When acetylene is burned in the presence of oxygen the temperature is about
3200 K.
Acetylene
gas welding
& cutting.
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Chapter 4
Nomenclature of Alkynes
Alkynes are named in the same way as alkenes with the suffix -yne replacing the -ene for
alkenes.
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Chapter 4
Classification of Alkynes:
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Chapter 4
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Chapter 4
1
pZ pZ
sp sp sp
Hs C
py py
C sp Hs
2
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Chapter 4
Reactions of Alkynes
(1) Electrophilic Addition:
(a) Addition of HX to Alkynes:
Alkynes react with HCl or HBr to form geminal
dihalides (both halogen atoms are added to the
same carbon). Both additions are following
Markovnikov’s rule.
Example:
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Chapter 4
(2) Reduction of Alkynes: (hydrogenation)
Alkynes react with hydrogen gas in the presence of a metal catalyst
(Pt: Platinum or Pd: Palladium or Ni: Nickel).
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Chapter 4
(4) Alkylation of acetylide anions:
The acetylide anion can react with an alkyl halide to yield a new alkyne product.
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Chapter 5
Aromatic compounds:
The term aromatic is used to describe benzene like molecules (in structure and chemical
behavior).
Many aromatic
compounds are
common in nature
and in medicine:
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Chapter 5
To be classified as aromatic, a compound must have:
(1) Cyclic structure.
(2) Planar structure.
(3) Completely conjugated compound (no atoms in the ring can be sp3 hybridized instead
all atoms must be sp2 hybridized).
(4) Fulfill Hückel’s rule
Hückel’s Rule
If the compound has 4n + 2 electrons, it is aromatic.
If the compound has 4n electrons, it is antiaromatic.
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Chapter 5
Q. Which of these is aromatic?
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Chapter 5
Q. Indicate which of the following are aromatic and antiaromatic?
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Chapter 5
Nomenclature of Benzene Derivatives
1. Mono-substituted benzene: name the substituent and add the word benzene.
No number is needed .
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Chapter 5
2. The substituent and the benzene ring taken together may form a commonly
accepted parent name (11 compounds).
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Chapter 5
3. A hydrocarbon with a saturated chain and a benzene ring is named by choosing the
larger structural unit as the parent
4. Di-substituted Benzenes: there are three different ways that two groups can be
attached to a benzene ring, so a prefix—ortho, meta, or para—can be used to designate
the relative position of the two substituents.
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Chapter 5
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Chapter 5
7. For polysubstituents (three or more) on a benzene ring:
1. Number to give the lowest possible numbers around the ring (minimum sum).
2. Alphabetize the substituent names.
3. The substituent that comprises the common name if any, is located at C1
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Chapter 5
8. Phenyl and Benzyl groups:
Phenyl group: used when the benzene ring is
named as substituent (C6H5-), (often abbreviated
Ph).
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Chapter 5
Practice
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Chapter 5
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Chapter 5
Electrophilic Aromatic Substitution Reactions
Is the characteristic reaction of benzene and
its derivatives.
In these reactions, hydrogen on the benzene
ring is replaced by an electrophile.
Cl+
Br+
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Chapter 5
ሺ2ሻ Nitration of Benzene:
Benzene reacts with a mixture of concentrated nitric acid and concentrated sulfuric acid.
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Chapter 5
ሺ3ሻ Sulfonation of Benzene:
Benzene reacts with fuming sulfuric acid at room temperature to produce
benzenesulfonic acid.
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Chapter 5
ሺ4ሻ Friedel–Crafts Alkylation:
Reaction of benzene with an alkyl halide in the presence of a Lewis acid to produce
alkylbenzenes (Ar-R).
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Chapter 5
Effects of the Substituents on the benzene ring
A substituent already present on a benzene ring can affect the reactivity of the ring toward
electrophilic substitution and the orientation that the incoming group takes when it replaces
a hydrogen atom on the ring.
Substituents are classified into three classes:
(1) Electron-Donating Groups: speed-up the reaction (make the
ring more reactive than benzene) and direct new groups to
ortho-, para-positions.
Chapter 5
Examples:
(1) Methyl group is electron-donating group, activating group and ortho–para director.
Toluene reacts faster than benzene in all electrophilic substitutions:
(2) Nitro group is an electron withdrawing group, very strong deactivating and a meta
director. Nitrobenzene undergoes nitration at a rate only 10-4 times that of benzene.
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Examples: Chapter 5
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Chapter 5
Examples for other Aromatic Compounds
Aromatic Heterocycles:
Aromatic Polycyclic
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101
Chapter 6
Alcohols, Phenols
&
Ethers
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Chapter 6
103
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Common names are often used for simple alcohols. To assign a common name:
Name all the carbon atoms of the molecule as a single alkyl group.
Name all the carbon atoms of the molecule
as a single alkyl group.
Add the word alcohol, separating the
words with a space.
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Chapter 6
Naming cyclic alcohols
When OH is bonded to a ring, the ring is numbered beginning with the OH.
• Because the functional group is at C1, the 1 is usually omitted from the name.
• The ring is then numbered to give the next substituent the lowest number.
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Chapter 6
Glycols
• Compounds with two hydroxyl groups are called diols.
• Compounds with three hydroxyl groups are called triols
and so forth.
• 1, 2 diols (vicinal diols) are called glycols.
Common names for glycols: use the name of the alkene from which they were
made.
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Isomerism in Alcohols:
• Alcohols with three or more carbon
atoms display positional isomerism.
• The number of the carbon to which the
OH is attached is written before the –ol.
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Chapter 6
Physical Properties of Alcohols:
(1) Boiling points: Hydrogen bonding causes the boiling points of alcohols to be higher
than those compounds of similar molecular weight in other functional groups.
(2) Solubility: Because of hydrogen bonding, low molecular weight alcohols are water
soluble.
Small alcohols are miscible in water, but solubility decreases as the size of the
alkyl group increases.
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Chapter 6
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Chapter 6
Reactions of Alcohols
(1) Dehydration of Alcohols:
Dehydration (elimination of H2O), is a
elimination reaction in which the elements of
OH and H are removed from the and carbon
atoms respectively. It requires strong acids such
as sulfuric acid and forms alkenes.
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Chapter 6
(2) Oxidation of Alcohols:
(a) Primary alcohols: can be oxidized by an excess oxidizing agent like aqueous H2CrO4 or
aqueous solution of acidified potassium dichromate (VI) to give carboxylic acids:
(b) Secondary alcohols: can be oxidized to ketones using either aqueous H2CrO4 or aqueous
solution of acidified potassium dichromate (VI):
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(c) Tertiary alcohols: are resistant to oxidation due to the lack of hydrogen atoms on the
carbon atom to which the hydroxyl group is attached.
Notice:
Chromium is reduced from the +6 oxidation state in H2CrO4 which is orange to the +3
with green color. This test can distinguish 1° and 2° alcohols from 3° alcohols.
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Phenols
Chapter 6
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Chapter 6
115
Chapter 6
Ethers
Are compounds having two alkyl or aryl groups bonded to an oxygen atom, as in the formula:
(R ൌ alkyl, Ar ൌ aromatic)
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Examples: Chapter 6
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Chapter 6
Common names of ethers:
Ethers are named using the names of the two alkyl groups followed by ether.
Isomerism:
Alcohols and ethers are functional group isomers.
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Chapter 6
Q. Draw all the possible isomers (positional & functional) for each of the following
molecular formulas:
(a) C3H8O (b) C4H10O
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Chapter 7
120
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Chapter 7
121
Chapter 7
122
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Chapter 7
123
Common names:
The first four aldehydes have common names:
The simplest ketone is acetone.
Others are named by expressing the two alkyl or aryl groups bonded to the
carbonyl group as separate words followed by the word ketone.
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Chapter 7
Example: Write structural formulas for all ketones with the molecular formula C6H12O and
give each its IUPAC name?
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Chapter 7
Reactions of Aldehydes and Ketones:
(1) Addition of Carbon Nucleophile:
Addition of a carbon nucleophile (Grignard reagent) is the most
important type of carbonyl addition reaction because a new carbon-
carbon bond is formed in the process.
Grignard reagents add to formaldehyde, aldehydes, and ketones to
give primary, secondary, and tertiary alcohols.
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Chapter 7
128
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Chapter 7
(2) Oxidation:
(a) Oxidation of Aldehydes:
Aldehydes are easily oxidized to carboxylic acids using a variety of reagents, including
chromic acid, silver salts, ...
Example: Oxidation of hexanal by
chromic acid to give hexanoic acid.
Chapter 7
Example:
oxidation of cyclohexanone to
hexanedioic acid (adipic acid).
(4) Reduction
Aldehydes are reduced to primary alcohols, and Ketones are reduced to secondary alcohols.
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Chapter 7
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Chapter 7
133
Chapter 8
Carboxylic Acids
&
Amines
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Chapter 8
Carboxylic Acids
Are compounds that contain the carboxyl group. They form important derivatives,
including esters, amides, anhydrides, and acid halides.
General formula:
For an aliphatic carboxylic acid is RCOOH
For an aromatic carboxylic acid is ArCOOH
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Chapter 8
(1) The name is derived from that of the longest carbon chain that contains the
carboxyl group by dropping the final -e from the name of the parent alkane and
adding the suffix -oic followed by the word acid.
(2) The chain is numbered beginning with the carbon of the carboxyl group.
Because the carboxyl carbon is understood to be carbon 1, there is no need to give
it a number.
Examples:
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Chapter 8
(3) A carboxylic acid containing a carboxyl group bonded to a cycloalkane ring is named by
giving the name of the ring and adding the suffix -carboxylic acid. The atoms of the ring are
numbered beginning with the carbon bearing the -COOH group.
(4) Dicarboxylic acids are named by adding the suffix -dioic acid to the name of the
carbon chain that contains both carboxyl groups.
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(5) Many aliphatic carboxylic acids are named according to their source or for some
characteristic property.
138
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Chapter 8
(1) Acidity: Carboxylic acids are weak acids. They react with bases like NaOH and KOH to
form water-soluble salts.
Amines
Chapter 8
Amines are widely distributed in nature in the form of amino acids and proteins,
which are found in all higher animal forms, and in alkaloids, which are found in
most plants. Some of these substances are fundamental building blocks of
animal tissue, and other biologically important substances, including many
vitamins, antibiotics, and other drugs, contain amino groups, -NR2.
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Chapter 8
Amines are further divided into aliphatic and aromatic amines. In an aliphatic
amine, all carbons bonded to nitrogen are derived from alkyl groups; in an
aromatic amine, one or more of the groups bonded to nitrogen are aryl groups.
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Chapter 8
142
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Chapter 8
Nomenclature:
(1) Systematic names (IUPAC) for aliphatic amines: The suffix -e of the parent
alkane is dropped and is replaced with -amine
(2) For heterocyclic aromatic amines, their common names have been retained in
the IUPAC system.
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Chapter 8
(4) Common names for most aliphatic amines are derived by listing the alkyl groups bonded
to nitrogen atom in alphabetical order in one word ending in the suffix -amine; that is,
they are named as alkylamines.
Physical Properties:
Amines are basic compounds.
Amines are polar compounds, and both primary and secondary amines form hydrogen
bonds. An N-H --- N hydrogen bond is weaker than an O-H --- O hydrogen bond. Because
hydrogen bonding is stronger in methanol than in methylamine, methanol has the higher
boiling point.
All classes of amines form hydrogen bonds with water and are more soluble in water than
hydrocarbons of comparable molecular weight. Most low-molecular weight amines are
completely soluble in water. Amines of higher molecular weight are moderately soluble or
are insoluble.
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145
146
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Chapter 8
Reactions of Amines:
(1) Reactions with Acids:
Amines react with strong acids to form water-soluble salts.
Chapter 8
(a) Secondary Aliphatic and Aromatic Amines:
Secondary amines, whether aliphatic
or aromatic, undergo reaction with
nitrous acid to give N-
nitrosamines.
(b) Primary Aromatic Amines:
Primary aromatic amines react with nitrous acid to form arenediazonium salts, and when an
arenediazonium salt is treated with an appropriate reagent, nitrogen is lost and replaced
with another atom or functional group.
Example: Aromatic amines
can be converted to
phenols by first forming
the arenediazonium salt in
aqueous sulfuric acid and
then heating the solution.
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