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  • Escript Com Rede de Correlação

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    Rychaellen Silva de Brito
    4 views2 pages
    The document reads data from a file, performs statistical tests on various variables, and calculates correlations between the variables. It loads libraries for statistical analysis, reads in data, performs univariate analysis on genes, calculates correlations between genes, and generates a correlation network graph.

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    escript com rede de correlação

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    The document reads data from a file, performs statistical tests on various variables, and calculates correlations between the variables. It loads libraries for statistical analysis, reads in data, performs univariate analysis on genes, calculates correlations between genes, and generates a correlation network graph.

    Copyright:

    © All Rights Reserved
    Download as TXT, PDF, TXT or read online from Scribd
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    4 views2 pages

    Escript Com Rede de Correlação

    Uploaded by

    Rychaellen Silva de Brito
    The document reads data from a file, performs statistical tests on various variables, and calculates correlations between the variables. It loads libraries for statistical analysis, reads in data, performs univariate analysis on genes, calculates correlations between genes, and generates a correlation network graph.

    Copyright:

    © All Rights Reserved
    Download as TXT, PDF, TXT or read online from Scribd
    Flag for inappropriate content
    of 2

    setwd("C:/Users/joann/OneDrive/Disciplinas 2021/tcc/INICIO/dados genes/oficial")

    library(ExpDes.pt)
    dados<-read.table("univariada.txt", h=T)
    head(dados)
    names(dados)
    attach(dados)
    dic(GEN, MMF, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, DL, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, DT, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, MP, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, REN, quali = TRUE, mcomp = "duncan", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, EC, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, SS, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, AT, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, Ratio, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)
    dic(GEN, pH, quali = TRUE, mcomp = "sk", nl = FALSE,
    hvar='bartlett', sigT = 0.05, sigF = 0.05)

    ##############################################################

    library(dplyr)
    library(tidyr)
    library(corrr)
    library(igraph)
    library(ggraph)
    library(readxl)
    library(rstatix)
    library("qgraph")
    df <- pivot_longer( dados, c("AFM":"PRO"), names_to = "variavel",
    values_to = "value" )
    df_mean <- df %>% group_by( GEN, variavel ) %>%
    get_summary_stats(value, type = "mean")
    df_mean
    df_w <- pivot_wider(
    df_mean,
    names_from = variavel,
    values_from = mean )

    df <- df_w %>%


    select(AFM,LD,TD,PM,JY,PT,SS,TA, Ratio, pH, FN, PRO)
    tidy_cors <- df %>%
    correlate() %>%
    stretch()
    graph_cors <- tidy_cors %>%
    filter(abs(r) > 0.5) %>%
    graph_from_data_frame(directed = FALSE)

    df
    corMat <- cor(df, use = "pairwise.complete.obs")
    corMat

    Graph_pcor <- qgraph(corMat, graph = "cor",


    layout = "spring",
    sampleSize = nrow(df),
    esize = 8)

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