Mitochondrial Diseases: Overview and Impact
Mitochondrial Diseases: Overview and Impact
1.0 INTRODUCTION
Mitochondria are vital organelles that control cell survival and death. They are essential for energy
metabolism and stress management, as well as serving as a central hub for many biological processes
(stenton and prokisch, 2020). Mitochondrial diseases are metabolic disorders that are genetically
determined and are characterized by abnormalities in oxidative phosphorylation (OXPHOS), and are
caused by mutations in genes present in both nuclear DNA (nDNA) and mitochondrial DNA (mtDNA).
These mutations can alter the structural proteins in mitochondria or proteins involved in mitochondrial
function. The OXPHOS system of mitochondria is located in the inner membrane and acts as a final step
in converting nutrients into ATP, the cell's energy currency. It consists of four multi-subunit complexes,
two mobile electron carriers, coenzyme Q10, and cytochrome c. complex i and ii receive electrons from
NADH and FADH2, respectively, and transfer them to coenzyme Q10, which then transports them to
complex iii. From here, electrons are transferred to cytochrome c and to complex iv, where they combine
with molecular oxygen to produce water. Complexes i, iii, and iv also create a proton gradient by moving
protons across the inner membrane, which is then used by complex v to produce ATP. These five
complexes are made up of a total of 92 different proteins. Complex i consists of 44 subunits (7 encoded
by mtDNA and 37 by nDNA), complex ii has 4 subunits, complex iii has 11 subunits (1 mtDNA and 10
nDNA), complex iv has 14 subunits (3 mtDNA and 11 nDNA), and complex v has 19 subunits (2 mtDNA
and 17 nDNA). Mutations in mtDNA or nuclear-encoded mitochondrial genes that disrupt the function of
oxphos can result in a variety of life threatening illnesses. Due to the offloading of electrons at complexes
i and iii, mitochondria are a major source of reactive oxygen species (ros), such as superoxide. The
increased production of ros in mitochondrial diseases can damage proteins, lipids, and DNA, potentially
Organelles called mitochondria composed of an outer and an inner membrane and are used by
cells for a number of purposes. coded proteins transported into mitochondria by a complex
protein transport system (Schmidt et al., 2010) Mitochondria are signaling hubs that integrate the
catabolic and anabolic metabolism and regulate cell growth, differentiation, vitality, and death
(Liu et al.,2020) Mitochondria cannot be synthesized de novo; therefore, they are subjected to
constant quality control and regeneration through budding of mitochondrial-derived ve sicles and
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mitophagy (Quirós et al., 2015) Another important mechanism maintaining stable state of
rRNAs and 22 tRNAs for their translation (. D’Souza and Minczuk, 2018) Four out of five
complexes of the ETC and OXPHOS (I, III, IV & V) are composed of subunits, encoded both by
the nuclear and mtDNA, while only one (II) is encoded solely by nuclear genome (Filograna et
al., 2021).
The mitochondrial genome has a higher mutation rate (about 100–1000 fold), than the nuclear
genome (Wallace and chalkia, 2013). The pathological mutations of mitochondria are survived
through mitochondrial fusion (Shtolz and Mishmar, 2013). This causes mtDNA
become heteroplasmic. There are ~ 1000 mtDNA molecules in a cell, and in case
of mutations, wild-type mtDNA can compensate for the presence of mutant mtDNA up to
Mitochondrial diseases can be group based on mutations affecting the mitochondrial metabolic
pathways into primary and secondary. The former type is due to mutations in the genes, mtDNA
or nDNA, responsible for OXPHOS, or the genes encoding for proteins that interfere with the
OXPHOS pathway (Muraresku et al., 2018). On the other hand, secondary mitochondrial
disorders may involve genetic, non-OXPHOS genes, and environmental factors (Niyazov et al.,
2016). The prevalence of primary mitochondrial diseases was estimated as 1 in every 5000
newborns (Pérez-Albert et al., 2018). In childhood, mitochondrial disorders are not defined by
specific symptoms; instead, a group of genetic, clinical, and biochemical manifestations are used
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Figured 1: Homoplasmic and Heteroplasmic Mitochondrial DNA(Muraresku et al.,2018).
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A Single cell can have wild type copies of mtDNA (homoplasmy) or a mixture of mutant and
wild-type mtDNA (heteroplasmy)). The proportion of mutant mtDNA copies determines the
penetrance and severity of phenotypic expression, and exceeding a certain limit (threshold)
Neurologic manifestations are among the most severe consequences of mitochondrial diseases
that can result in several conditi ons, such as Leigh syndrome, Epilepsia partialis continua,
occipital stroke-like episodes, axon al sensorimotor neuropathy, myoclonus, and ataxia (Riquin
et al., 2020). In addition, neuropsychological disorders were also recorded, such as impaired
consciousness, hallucinations, reasoning, conf usional sta te, depression, autism and
unsteadiness. In the case of the ophthalmic system, different regions of the eye could be affected,
which are expressed in the form of progressive ptosis and external ophthalmoplegia, visual loss
(retro-chiasmal), pigmentary retinopathy and bilateral optic atrophy ( Lock et al., 2021). In
infants and adolescents, these neuro-ophthalmologic symptoms may be progressive and lead to
serious eye complications with decreased vision efficacy, Hearing loss at both ears (i.e. bilateral)
encephalomyopathy, lactic acidosis and stroke like episodes or MELAS (Chinnery et al., 2000)
In children with bilateral hearing loss, mitochondrial dysfunctions could be the leading cause, or
other neurological disorders can also be involved (Vandana et al., 2016). The heart is another
important organ that can be deteriorate by primary mitochondrial disorder. Lack of functions in
the myocardium cells is characterized by deformed muscle structure and functions (Meyer et al.,
Individuals with mitochondrial cardiomyopathy often display heart hypertrophy and left
ventricular non compaction are some syndrome found in children primary metabolic disorder.
Individuals with MELAS are most likely to develop arrhythmia, including Wolff-Parkinson-
White and ventricul are pre-excitation (Ng and Turnbull, 2016). The disease severity ranges from
asymptomatic to life-threatening tachyarrhythmia and heart failure and could eventually lead to
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The gastrointestinal tract is also affected by primaryary mitochondrial disorders, in which
numerous manifestations will cause permanent and untreatable disability due to the difficulty of
early diagnosis (Rose et al., 2 017 ). These manifestations include gastroesophageal sphincter
The kidneys are among the organs that are likely to fail due to mitochondrial disorders due to the
high energy consumption in this organ. Even Kidney diseases resulting from mitochondrial
disorders can be categorized into primary and secondary. In the first category, several diseases
have been reported, such as acute or chronic kidney failure, nephrotic syndrome, renal tubular
category includes either organ other than the kidneys, for example, the heart and pan creas, or
other diseases such as rhabdomyolysis (Yokoyama et al., 2016). A previous study has reported a
significant relation between mitochondrial dysfunctions, chronic kidney diseases and sarcopenia
Children with mitochondrial diseases have frequently suffered from several physicals,
neuropsychological disorders, behavior and speech disorders, high morbidity, and recurrent
episodes of anxiety and depression (van de Loo et al., 2020). Due to the impaired mitochondrial
functions, affected children are usually unable to participate in daily activities, which could
aggravate psychiatric disorders ( Riquin et al., 2020). Caregivers and parents might also suffer
from stress that can exacerbate hospitalization and the need for clinical intervention ( Sofou,
2013).
Mitochondrial and nuclear mutations have lead to about 40 clinical forms of mitochondrial
More than 30 of these MD have a mutation in nuclear DNA and more than 10 syndromes and
diseases induced by mutations in mtDNA (Chinnery et al., 1993) MD usually affects children,
but the age of MD onset, as well as patient’s lifetime, varies a lot. The most typical clinical
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manifestations of MD are neurological (epilepsy, ataxia, cognitive deficits), sensory (blindness,
hearing loss), and muscular (myopathy) symptoms. However, the clinical picture can vary
greatly and show up as kidney dysfunction, diabetes, liver disease, infertility, arrhythmias, etc.
Certain MD symptoms tend to co-occur, making it possible to group them into syndromes like
Lactic Acidosis, and Stroke-like events). Certain combinations of symptoms and indicators are
brought on by gene mutations, and vice versa, the same mutations might result in other
syndromes. Disturbances in the respiratory chain complex I are the primary cause of MD,
Certain symptoms of multiple disorders (MD) can cooccur, allowing for the creation of syndrom
es such mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) or mat
Mutations in distinct genes can result in a variety of symptom constellations, and conversely, the
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Figured 2: Overview of the MD in the clinical and pharmacological contexts. (Kirby et
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1.5 OPTION FOR STANDARD TREATMENT OF MITOCHONDRIAL DISORDER.
The treatment of MD remains anecdotal due to a weak body of evidence and scant data from
randomized trials. Furthermore, the majority of recommended remedies are regarded as medical
meals. (Avula et al., 2014). Interventions are mostly focused on vitamin-based and cofactor-
based mitochondrial therapies intended to promote critical enzymatic reactions, reduce oxidative
stress, and scavenge toxic acyl coenzyme A (acyl CoA) molecules, which accumulate in
mitochondrial disease (Parikh et al., 2009). Using cocktails of vitamins and co-factors is more
justified when factors in question are decreased either due to deficiency or defect in their
transport (Khan et al., 2015).Additionally, patients struggling with MD are recommended to diet
and lifestyle changes (Bough et al., 2006). However, only few patients respond to this treatment
since all the methods relying on metabolic gene therapy are poorly effective because of their
non-selectiveness.
SECTION TWO
One appealing and simple therapeutic option for monogenic recessive disorders is gene therapy.
In the clinic today, severe genetic disorders are treated by reintroducing the wild-type form of a
mutant gene or other therapeutic genes with the proper delivery strategy. Even while it's still
difficult to transfer and express an ectopic gene throughout the entire body, modern technology
can target particular cells or tissues to provide a therapeutic impact. Through the development of
novel recombinant DNA technology, the concept of gene therapy was initially envisaged in the
1980s. However, genome sequencing and biotechnology advancement have made gene therapy a
real medical revolution, offering the possibility to cure many otherwise deadly genetic diseases
(Mendell et al., 2021)The first official gene therapy product of the western world was Glybera,
which is to treat lipoprotein lipase deficiency (Melchiorri et al., 2013). Many successful clinical
trials, mainly using viral vectors, have followed, resulting in the more recent commercialization
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of Luxturna to treat inherited retinal dystrophy (Russell et al., 2017) and Zolgensma to treat
pediatric patients with spinal muscular atrophy While the majority of preclinical and clinical
research focuses on specific organs or tissues, like the nervous system or the eye, treating many
MDs would need widespread systemic gene expression, which makes creating an efficient
treatment plan difficult due to the difficulties in getting proteins or genetic material into the
mitochondria. For a variety of hereditary illnesses, distinct gene delivery strategies using viral or
non-viral methods have been developed. Here, we first cover the pertinent technical details in
brief before concentrating on the main treatment approaches for MDs. A variety of viral and non-
viral gene delivery strategies have been developed for different genetic illnesses.
Here, we first address the pertinent technical elements and then move on to discuss the main treatment str
2.1 Gene Therapy for Mitochondrial Diseases Caused by Mutations in Nuclear Genes
Gene therapy is the easiest "precision medicine" approach for many doctors, although there are a
number of factors that must be considered for its successful use. Most MDs
are multisystem syndromes, meaning they affect multiple organs; therefore, a significant
improvement in the patient's condition should, at least in theory, require widespread, if not
ubiquitous, gene expression of the vector carrying the therapeutic transgene. However, it has
been shown that single-organ gene therapy can successfully improve the phenotype of MDs in at
encephalomyopathy). Among other things, the high risk of an immune response against the
delivery vector or therapeutic cargo requires practical consideration of how to achieve such a
broad expression pattern. First, high vector doses are required to achieve long-term and
widespread systemic effects, which involve issues of toxicity and immunogenicity. Large sets of
vectors must be produced in high throughput, which greatly increases production costs and
ultimately processing costs. Second, a virus particle with the correct tropism must
be selected based on the target tissue. In most cases, systemic transport to multiple tissues is
required. Third, because mitochondrial diseases usually affect the central nervous
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system, the virus particle must be able to cross the BBB. Here, we review the preclinical and
clinical applications of gene therapy to restore the function of mutated genes that cause MD.
available for ANT1. ANT1 encodes the adenine nucleotide translocator, an integral inner
mitochondrial membrane (IMM) protein operating as electrogenic pumps that export ATP in
exchange for cytosolic ADP (Kaukonen et al., 2000). Mutations in ANT1 lead to MM associated
with ragged red muscle fibers and PEO triggered by the paralysis of the extraocular eye muscles
(Kaukonen et al., 2000). One of the earliest preclinical gene therapy studies for mitochondrial
myopathy (MM) was performed with an ssAAV2 vector carrying murine Ant1 cDNA
administered intramuscularly (1 × 109 i.u.) to an Ant1 knockout (KO) mouse model. Ant1
KO mice showed severe exercise intolerance and metabolic acidosis. Histological and
ultrastructural analysis showed the presence of torn red muscle fibers with
stable expression in muscle precursor cells and differentiated muscle fibers. The transgenic
ANT1 protein was targeted to the IMM and formed a functional ADP/ATP carrier, resulting in a
5–30% increase in ANT1 protein, a 25–45% increase in ATP production, and a reversion of the
toxic sulfide accumulation. ETHE1 is a nuclear gene encoding sulfur dioxygenase (SDO),
which is involved in a mitochondrial pathway that converts sulfide to harmless sulfate. Recessive
characterized by the accumulation of hydrogen sulfide (H2S) and ethylmalonic acid (EMA)( Di
Meo et al., 2015). At higher concentrations, H2S acts as a toxic compound that inhibits several
enzymes, such as cytochrome c oxidase (COX) ( Di Meo et al., 2011). and short-chain acyl-CoA
dehydrogenase (Tiranti et al., 2009). leading to the progressive accumulation of necrotic and
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hemorrhagic brain lesions (Yang et al., 2004). chronic hemorrhagic diarrhea, vascular petechiae
purpura and orthostatic acrocyanosis. The Ethe1 KO mouse shows growth retardation from
postnatal day 15 and reduced motor activity and premature death at the fifth to sixth postnatal
patients, with clearly low COX activity in muscle, brain and jejunum, but normal activity in the
liver. By expressing the ETHE1 gene lacking circulating H2S clearance in a filtering organ such
as the liver, H2S levels can be lowered, thus acting as a detoxification therapy. A single systemic
injection of 4 × 1013 viral genome (vg)/kg ssAAV2/8 vector expressing human hETHE1 cDNA
under the liver-specific thyroxine-binding globulin (TBG) promoter into three-week-old early
symptomatic Ethe1 KO mice resulted in clear recovery. of the phenotype and a strong
extension of mouse lifespan. This remarkable clinical result was associated with the partial or
complete correction of the disease’s main metabolic and biochemical indexes, including the
EMA and thiosulfate levels in plasma and the COX activity in tissues (Di Meo et al., 2012).
Iiving-donor orthotopic liver transplantation also resulted in an effective option to treat EE since
the transplanted organ substituted the deficient ETHE1 enzyme and cleared the circulating toxic
H2S ( Olivieri et al., 2021). These results demonstrated the efficacy and safety of AAV2/8-
mediated liver gene therapy for EE and related conditions caused by the accumulation of toxic
of mtDNA and enzyme activity of the mitochondrial respiratory chain in damaged tissues.
The depletion of mtDNA in humans has been associated with mutations in nine nuclear genes,
six of which (TYMP, TK2; DGUOK; SUCLA2, SUCLG1, and RRM2B) are involved in the
homeostasis of the mitochondrial nucleotide pool ( addition, mtDNA depletion can be caused by
encoding a mitochondrial T4-phage-like helicase (twinkle) (Ronchi et al., 2011). and MPV17,
2006 ).Several gene therapy approaches have been explored to restore the physiological activity
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TYMP
recessive mutations in the nuclear gene TYMP, which encodes the cytosolic enzyme thymidine
phosphorylase (TP). The lack of TP activity leads to the systemic accumulation of TP substrates,
the nucleosides deoxythymidine (dT) and deoxyuridine (dU), which are precursors of the
deoxyribonucleoside triphosphates (dNTPs) used for DNA synthesis (Di Meo et al., 2005). One
of the first strategies developed for restoring TP and reverting dT and dU overload to normal
levels was the lentiviral-mediated hematopoietic ex vivo gene therapy (Torres-Torronteras et al.,
2011).
Immunoselective hematopoietic lineage-negative (Lin) cells from DKO mice were transduced
with a lentiviral vector containing the TYMP cDNA (p305-TP), containing the human
phosphoglycerate kinase (hPGK) promoter and containing the EGFP coding sequence as a
marker. gene Transduced cells were infused into partially myeloablated syngeneic dKO mice.
One month after transplantation, gene expression levels in the peripheral blood (PB) of TP-
transplanted mice ranged from 2.0 to 10.5%, and the average copy number per transduced cell
ranged from 0.5 to 1.5 In the peripheral blood of transplanted mice, TP activity was observed
follow-up revealed a reduced survival rate of treated mice due to the transplantation procedure,
which included total body irradiation of recipient animals before progenitor cell infusion.
TK2
deoxythymidine monophosphate (dTMP), which are then phosphorylated to dCTP and dTTP,
which are essential for mtDNA replication and maintenance. Recessive mutations in the human
MPV17
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MPV17 is a nuclear gene encoding for a mitochondrial inner membrane protein involved in
onset severe hypoglycemic crises followed by liver cirrhosis and failure leading to premature
death (Wong et al., 2007).Patients who survive liver failure develop progressive peripheral
Although the molecular and biochemical features in the liver of Mpv17 KO mice closely
resemble human alterations, this model does not develop hepatic dysfunction and
were fed a high-fat ketogenic diet (CD), they rapidly developed liver cirrhosis and liver failure.
2014. , Bottani and coworkers launched an ssAAV2/8-based preclinical gene therapy protocol
for MPV17-MDS. typical viral vector. hMPV17 cDNA under the control of the liver-specific
vg/kg to 2-month-old Mpv17 KO and control mice. Analysis of a blood sample before AAV
two markers of hepatocyte leakage. Those signs fully normalized three weeks after AAV
injection. Moreover, this treatment effectively prevented KD-induced liver degeneration and
Leigh Syndrome
Leigh syndrome (LS) is a neurometabolic MD that affects 1 in 36,000 newborns and causes
lactic acidosis and symmetric lesions in the CNS, leading to intellectual disability and muscle
weakness, with a peak of mortality before three years of age. Mutations in more than 75 genes of
nuclear or mtDNA that commonly affect CI and CIV of the mitochondrial respiratory chain can
cause LS (Schubert and Vilarinho, 2020) The following chapters will discuss the gene therapy
NDUFS4
the NDUFS4 gene are a frequent cause of LS (Budde et al., 2003) Common symptoms include
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psychomotor arrest or regression, hypotonia, dystonia, ataxia, ophthalmoplegia, lethargy, apneic
spells, and respiratory failure with elevated lactate levels in the blood and cerebrospinal fluid
The constitutive Ndufs4 KO mouse model appeared healthy at birth, but starting from 40 days of
age, it develops progressive encephalopathy, growth retardation, ataxia, hypotonia, and lethargy,
ultimately leading to death at ~7 weeks. Notably, CI activity was reduced, recapitulating the
During the last decade, various research groups have used this model to devise a gene therapy
approach for ls. Using an ssaav2/9 vector, di meo and colleagues delivered the human wild-type
ndufs4 cdna under the control of the cytomegalovirus (cmv) promoter. At postnatal day 21, the
vector was administered (2 1012 vg/mouse) iv by retroorbital injection. The hndufs4 protein was
found to have high amounts in the skeletal muscle, heart, and liver, but no significant increase in
protein content was detected in the brain. Although hndufs4 was able to fully restore the ci
assembly in ndufs4 ko liver mitochondria and restore the ci spectrophotometric activity in the
viscera, no significant improvement in the clinical phenotype was observed. Similar results were
obtained in newborn mice that were injected systematically through the temporal vein. In
newborn mice injected intracerebroventricularly (icv) with a higher dose (3 1011 vg/mouse),
there was a modest increase in body weight and a significant improvement in motor
coordination, without extending their lifespan. Importantly, an imaging study of injected brains
revealed that the bulk of the transduced cells belong to the glia.
coordination, a gain of body weight, and a highly significant prolongation of the lifespan (82
SURF1
Surf1 is a nuclear gene that encodes for a mitochondrial inner membrane protein that is involved
in the assembly of civ. Surf1 mutations result in a defect in cox assembly and a severe cox
deficit, which is one of the main causes of ls (tiranti et al., 1999), but the constitutive surf1 ko
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murine model exhibits mild cox deficiency and a slight increase in blood lactate, but it fails to
recapitulate human clinical signs while displaying a remarkable increase in longevity and
improved memory (dell et al., One-month-old ko mice were given an intrathecal injection (8
1011 vg/mouse) of an scaav9 vector carrying hsurf1 cdna under the control of the hybrid chicken
—actin/cmv enhancer (cag) promoter. The treatment effectively increased surf1 mrna expression
in many important organs, including the brain and spinal cord, resulting in a partial recovery of
cox activity in all tissues, as well as the abnormal lactate acidosis caused by intense exercise
Friedrich Ataxia
spinocerebellar and sensory ataxia and is associated with hypertrophic cardiomyopathy and
diabetes (pandolfo and friedreich, 2009). Frda is mainly caused by a homozygous n(gaa)
expansion within the first intron of the frataxin gene (fxn), an essential mitochondrial protein
involved in the biosynthesis of iron This triplet expansion leads to heterochromatinization of the
locus, with a consequent decrease in fxn transcription. A frataxin deficiency leads to impaired fe-
and ultimately cell dysfunction and death (campuzano et al., 1996). Several disease models have
been developed in recent years, but most of them failed in recapitulating the biological aspects of
frda. For a detailed description of the characteristics of the main fxn mouse models, please refer
to this paper (ocana et al., 2021). Nevertheless, these models enabled the development of gene
therapy strategies. By retro-orbital injection, the 7-week-old conditional mouse model (mck-cre-
fxnl3/l) was treated with an ssaavrh10-cag-hfxn-ha vector. Whether administered before or after
the onset of the disease, the treatment was effective at preventing or reversing cardiomyopathy
and mitochondrial dysfunction (piguet et al., 2018). In a subsequent study, the same group
developed a pvalb-cre conditional ko model that treats sensory axonopathy and cerebellar ataxia.
ha at a 5 1013 vg/kg dose was administered. All behavioral studies revealed a significant
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7.5 weeks of age to assess the therapeutic value of the intervention at a later post-symptomatic
stage. Within the first few days after treatment, the treatment reversed fine peripheral
coordination and neurological functions (piguet et al., 2018). Despite these promising results, it
is important to bear in mind that the dose of vector administered following the dual injections
was very high and may not be appropriate in a clinical setting. According to a recent report, fxn
cardiac overexpression was safe up to nine times the physiological value, with significant cardiac
toxicity over twenty times. The toxicity seems to be caused by mitochondria respiratory chain
SECTION THREE
37 genes (16569 Base pair in a circular pattern) that encode 13 proteins (seven subunits of
respiratory chain complex I, three subunits of complex IV, two subunits of complex V, and one
subunit of complex III), 22 tRNAs, and two rRNAs make up the human mitochondria double-
strand DNA, or mtDNA. While the amount of mitochondria in each cell might vary, each
mitochondrion contains several copies of mtDNA (two to ten copies). The inheritance of mtDNA
is maternally transmitted, in contrast to the nDNA, which has a biparental transmission pattern
(An et al., 2020). Additionally, there are 1,500 identified genes presented in the nDNA, which
are essential for the mitochondrial structure and function (Li et al., 2020).
The mtDNA "utation rate" Is considered to be higher (more than ten times) than the nDNA. This
could be due to the inadequate shielding of the histone complex and the high sensitivity of
mtDNA to oxidative stress when using less effective mtDNA repair techniques, such as the base
excision repair technique (Alexeyev et al., 2013). In addition, the DNA polymerase (DNA
polymerase ) activity in the mitochondria has a low fidelity rate, which can increase the mutation
during mitochondrial dna replication (song et al., 2005). As shown in fig. ci, the mutation in the
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mitochondria can affect the whole mtDNA in the cell (homoplasmy) or partially (heteroplasmy).
Both events, therefore, influence the severity of mitochondrial disorders (Moggio et al., 2014). In
addition to the primary mitochondrial function, i.e. ATP, mitochondrial function is a branch of
mitochondrial function. The mitochondria serve other functions in calcium metabolism, innate
metabolism, cell death, stem cell regeneration, autophagy, inflammation, and senescence (smith
et al., 2012). Mutation at the mtDNA or nDNA levels can result in a variety of pathogenesis
effects.
The nuclear genome Is essential for mitochondrial function, with more than 1,000 genes
involved. The mutations of greater than 280 genes have been reported to cause mitochondrial
disorders, where the defect may be inherited as autosomal dominant (8 genes), recessive (262
genes) or X- linked pattern (14 genes) (Stenton and Prokisch, 2020). Historically, the first nDNA
mutation (autosomal recessive) was associated with human mitochondrial disease at the SDHA
gene, which is involved in encoding a structural subunit of complex II, (Bourgeron et al., 1995).
On the other hand, the first X-linked recessive mutations identified in 2007 at the NDUFA1 gene
were p.Gly8Arg and p.Arg37Se (Fernandez-Moreira et al., 2007). The prevalence of nDNA
which can be caused by approximately 90 gene mutations, including the mtDNA and nDNA
genomes (Rahman et al., 2017). An example of this is the mutation in the SURF1 nDNA gene,
(Schon et al., 2021). The most common large-scale mtDNA deletion resulted from the omission
of 4977 bp located between the locus 8470 and 13447, which involved the encoding of 15 genes
from ATPase8 gene to ND5 gene (Yusoff et al., 2019). In contrast, point mutation can involve an
insertion, deletion or substitution, affecting either the respiratory chain coding genes or the RNA
coding genes (mt-rRNA and mt-tRNA). Furthermore, m.3243A > G mutation is one of the most
common mutations in the tRNAs genes, with a heterogeneous effect on the muscles and the
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3.1 Clinical features of mitochondrial diseases
The childhood-onset of mitochondrial diseases have mainly resulted from recessive nDNA or
mutations in mtDNA that exist at high levels of mtDNA heteroplasmy (Taylor and Turnbull,
2005). As mitochondrial diseases have diverse phenotypes and usually cause multi-organs
dysfunction, the clinical features and diagnosis are relatively complicated (Alston et al., 2017).
Moreover, the tenuous link between the observed clinical phenotype and the genotype in
mitochondrial disease patients complicates the accurate diagnosis (Stenton and Prokisch, 2020).
The pediatric-onset of mitochondrial disorders have several clinical features that are regularly
exercise intolerance and dysautonomia, (Kanungo et al., 2018). Nevertheless, the bulk of these
physical abnormalities are not related to mitochondrial disorders, and a confirmation analysis is
required (e.g., a blood test). (analysis of molecular genetic screening tests.) The congenital
disabilities in children with mitochondrial dysfunctions are frequently associated with different
complications, as in the case of renal disease and proximal tubulopathy that occurs due to the
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Figure 3: clinical features of mitochondrial diseases. (Kanungo et al.,2018).
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In addition to previously mentioned clinical features of mitochondrial diseases, hypertrophic
associated with MTO1 or AARS2 mutations (Euro et al., 2015). Moreover, excessive hair
growth (hypertrichosis) and dysmorphic disorder are common clinical manifestations in children
with mitochondrial diseases that are caused by mutations in SURF1 (Baertling et al., 2013) and
FBXL4 (Ballout et al., 2019), respectively. The modifications in SUCLA2, SUCLG1, MT-
RNR1 (m.1555A > G), MT-TL1 (m.3243A > G), RMND1 and RRM2B in children can lead to
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Figure 4: childhood -onset Mitochondrial diseases(Rahman,2020).
various diagnostic tests, such as blood, urine, molecular genetics, and tissue biopsy tests, can be
disease, several common biomarkers can be used, including specific enzymes, anaerobic glucose
metabolism, and substances or metabolic intermediates (e.g., alanine, lactate, creatine kinase,
abnormalities in their early stages, it is necessary to perform metabolic screening tests in urine
and blood samples. Different diagnostic biochemical screening tests may also be used, such as a
complete blood count, urine organic acid analysis, urine amino acid analysis, hormone testing,
hemoglobin a1c, comprehensive chemistry panel, blood lactate and pyruvate, creatine kinase,
ammonia and carnitine, acylcarnitine, and lipoprotein profiles (Muraresku et al., 2018). If
mitochondrial disorder.
One of the most valuable biomarkers in the diagnosis of mitochondrial disease is the metabolic
fingerprints of OXPHOS deficiency (Finsterer and Zarrouk, 2018). For instance, it has been
demonstrated that the fibroblast growth factor 21 (FGF21) level is a potential biomarker for
(GDF15) has been detected in blood samples collected from mitochondrial dysfunction patients
organic acids in urine may be used as a diagnostic tool to detect several mitochondrial disorders
SUCLA2 and SUCLG1) (Landsverk et al., 2014), and 3-methylglutaconic aciduria (caused by
Molecular genetic testing is a vital diagnostic tool that helps identify the molecular etiology of
identify de novo dominant mutations in the affected individuals and improve the interpretation
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accuracy of variant pathogenicity. The most effective method for identifying primary
mitochondrial disorders may be the next-generation sequencing (ngs) of mtDNA and its
abundance in diseased tissues. Biotin and thiamine responsive basal ganglia disease (slc19a3)
and riboflavin transport deficits (slc52a2 or slc52a3) have been found to have phenotypic overlap
In addition to biochemical screening analysis and molecular genetic testing, tissue analysis is
that have mtDNA mutations or mitochondrial dysfunctions (Dimmock and Lawlor, 2017). The
mitochondrial enzymes and functions can be evaluated through a skin biopsy (Newell et al.,
2019). This tissue screening might include the measurement of integrated mitochondrial
OXPHOS and the analysis of enzymatic activity of the electron transport chain (ETC) complex
(Germain et al., 2019). Biopsy from skeletal muscles can be performed to understand the degree
blood genetic analysis (Ahmed et al., 2018). Further clinical diagnostic testing may be conducted
on high energy demanding tissues, i.e. kidneys or muscle, such as ETC complexes I-IV enzyme
The significant differences between the mtDNA and the nDNA are that there are several copies
of mtDNA that lack histone. Epigenetic variation is a change that may occur in the genetic
expression, which is not heritable (Sharma et al., 2019). Several mtDNA variabilities are also
The primary epigenetic regulation of the mitochondria can occur In the mtDNA methylation,
2019). DNA methylation is the process in which a methyl group from S-adenosyl-methionine
binds to the DNA nucleotide, mainly adenine (A) and cytosine (C), by the support of DNA
The communication between mitochondria and the nucleus plays a critical role in cellular
homeostasis. The nucleus controls the mitochondrion’s gene expression and post-translation
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process; however, the nuclear gene expression and protein activity are mediated by the
mitochondria through signal transport from mitochondria to cytosol. This crosstalk is controlled
by several signals, such as microRNA (miRNA), a subclass of ncRNA (Cavalcante et al., 2020).
The transcription of miRNA, which is non-coding RNA, occurs in the nucleus as primary
miRNA to be transformed to precursor miRNA by Drosha and then to its mature form by Dicer
at the cytoplasm. The primary function of miRNA is to inhibit the translation of mRNA via
destabilizing its binding to the 3′ untranslated region of mRNA (Chipman and Pasquinelli, 2019).
miRNA can play a vital role in mitochondrial function. For instance, several miRNAs such as
miR-138, miR-1291, miR-150, and miR-199a-3p can cause a change in the regulation of the
expression of some glycolytic enzymes’ glucose transporters. This explains the role of miRNA in
Additionally, the production of reactive oxygen species (ROS) from the mitochondria could
trigger the expression of hypoxia-inducible factor 1 (HIF-1) (Weinberg et al., 2015). The ncRNA
has a vital role in regulating gene expression and controlling the mitochondria. For example,
miRNA from the nucleus might control the mitochondrial gene expression, which depends on the
There is no cure or an FDA (i.e. Due to the different genes and phenotypes involved with the
diseases. In the last decade, however, only few symptomatic therapies have been validated as
palliative therapies by clinical trials. A mitochondrial cocktail, i.e., a microbial cocktail. A blend
of vitamins, cofactors, minerals, and antioxidants can reduce pain, delay disease progression, and
electron transport chain and treating mitochondrial dysfunction’s consequences (Parikh et al.,
20019).
24
Poor diet and extreme malnutrition lead to secondary mitochondrial dysfunctions, while
overeating increases ROS formation and generates toxic metabolites (Wortmann et al., 2009).
Therefore, specific dietary restrictions have been shown to ameliorate mitochondrial health in
patients with mitochondrial disorders; thus, evaluating individuals’ nutritional necessity and
deficiencies are significantly needed. A High-carbohydrate diet has been reported to increase
oxidative stress, which can be metabolically challenging for those with impaired oxidative
phosphorylation (El-Hattab et al., 2012). On the other hand, the ketogenic diet (high-fat diet) has
been beneficial for patients with pyruvate dehydrogenase deficiency but not helpful in the case of
pyruvate carboxylase deficiency and treating fatty acid oxidation disorders (Bough et al., 2006).
Mitochondrial diseases affecting the respiratory system can be treated with substances that
enhance electron transport and substrate supply while bypassing its components. Several
phenotypes of mitochondrial disorders resulting from the biosynthetic defects of Coenzyme Q10
(CoQ10) were treated with CoQ10 supplementation and found to decrease the elevated levels of
lactate in post-exercise and increase oxygen consumption (Di Giovanni et al., 2001). Other food
supplements, including vitamins and amino acids, may be used as redox agents and intracellular
buffering for ATP. Other symptoms relevant to mitochondrial diseases, including stroke-like
episodes, myopathy, diabetes, and lactic acidosis associated with nitric oxide (NO) depletion,
could be treated with NO natural precursors, for example, arginine and citrulline, to restore the
Physical therapy and aerobic fitness have been shown to improve mitochondrial health and
due to low maximal oxygen uptake, but a gradual endurance exercise could help overcome such
In addition, physical therapy promotes mitochondrial biogenesis, which is induced by the high
expression of the master transcription regulator pgc-1. Accumulating evidence was demonstrated
that exercise elevates mitochondrial ROS, which triggers the organelle biogenesis pathway by
the high expression of the master transcription regulator PGC-1α leading to increased
mitochondrial quantity and quality (Kang and Li Ji, 2012). In addition, physical training can
25
improve OXPHOS, respiratory capacity and electron flow, reducing ROS production ( Memme
et al., 2021).
Ccoq analogs such as idebenone, mitoquinone, and short-chain coq10 with improved
electron transport chain and were tested clinically for their therapeutic value. These natural and
synthetic quinones demonstrated potential antioxidant activities against toxic metabolites from
the defected mitochondria and accumulated ROS (Suárez et al., 2021). For example, a study by
(Klopstock et al., 2011) showed remarkable success in treating the visual acuity of a large group
of patients using idebenone. Many applications in clinical trials, such as Leber’s Hereditary
Optic Neuropathy (LHON; NLM, 2013), Parkinson’s disease (NLM, 2018), and MELAS
syndrome (NLM, 2016), have assured the safety of idebenone and its efficacy, even at higher
doses. It has passed phase III evaluation (Suárez et al., 2021). Other coq analogues with a diverse
side chain had unique biological functions and enhanced pharmacological properties, such as
bioavailability, mitochondrial accumulation, and antioxidant activity. Coq analogues with shorter
isoprenoid side chains have a higher antioxidant value, according to reduce ros-induced toxicity
and accumulation of ros from the defected mitochondria, antioxidants such as lipoic acid and n-
Other than the controversial Mitochondrial Replacement Therapy (MRT) utilized to prevent the
therapy can be considered the ultimate treatment strategy to which mitochondrial diseases
patients hold their hopes out. Despite being the prominent approach for gene editing, the
behind in mitochondrial diseases due to the encountered difficulties in delivering the Cas9
nuclease and a guide RNA (gRNA) along with a homologous repair template coincidentally to
mitochondria for editing to take place (Gammage et al., 2018a). Alternatively, restriction
endonucleases have been used as a novel tool for gene editing, owing to their ability to form
26
linear fragments of mtDNA after selective cleavage of mutant mtdna while leaving the wild type
intact. Elimination of the mtDNA fragments pursues rapidly by the exonucleolytic activity of
enzymatic machinery, including the mitochondrial polymerase gamma (POLG) (Nissanka et al.,
2018), the mitochondrial replicative DNA helicase Twinkle (TWNK), and the mitochondrial
population of the wild type mtDNA. However, the use of grnas is a problem that prevents the
production of such restriction endonucleases. This inability has steered the work toward
developing programmable nucleases that can induce specific elimination of the mutant mtDNA.
These nucleases include the mitochondrial-targeted- zinc finger nucleases (mtZFN) delivered by
(Bacman et al., 2018), both corrected the mtDNA heteroplasmy through inducing a specific
nucleases cannot cause particular nucleotide changes in mtDNA nor be applied to homoplasmic
mtDNA mutations due to the potential harmful destruction of all mtDNA copies (Stewart and
Chinnery, 2015).
A safer gene therapy reliant on base editing was recently developed by Mok et al. (Mok et al.,
2020). The interbacterial cytidine deaminase toxin DddA was effectively modified to divide into
two non-toxic parts that could be activated when they came into contact with mtDNA. These
base editors are made up of a single guide RNA (sgRNA) to aid in the single-nucleotide
conversion process via the deamination reaction and a catalytically inactive Cas9 protein
conjugated to a bacterial deaminase. With great target specificity, DddA-base editors can
catalyze the programmable transformation of C•G-to-T•A, allowing for precise editing of human
mtDNA without causing double-strand cleavage. When combined, these intriguing instruments
translation into clinics is still pending, owing to the lack of efficient delivery of nucleic acids to
27
SECTION FOUR
4.0 Conclusion
Mitochondrial diseases affecting newborns and the elderly can be distinguished by their clinical,
biochemical, and genetic complexities. Recent advances in medicine have improved our
prevention, as well as the mechanisms responsible for the development of the complex clinical
phenotypes associated with such disorders. Several essential mitochondrial genes have been
identified, and they could be used to enhance mitochondrial function. Although no specific
medication has been developed to target the mitochondrion, palliative therapy is often
recommended. More effective cures can be found by using more specific medical techniques that
target individual genetic variations. In treating mitochondrial disease, new therapeutic strategies
and the increasing number of clinical trials could have a promising future.
28
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