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Disease-Symptom Knowledge Database
This table below is a knowledge database of disease-symptom associations generated by an automated method base
information in textual discharge summaries of patients at New York Presbyterian Hospital admitted during 2004. T
column shows the disease, the second the number of discharge summaries containing a positive and current mentio
disease, and the associated symptom. Associations for the 150 most frequent diseases based on these notes were co
the symptoms are shown ranked based on the strength of association. The method used the MedLEE natural langu
system to obtain UMLS codes for diseases and symptoms from the notes; then statistical methods based on frequen
occurrences were used to obtain the associations. A more detailed description of the automated method can be foun
Chused A, Elhadad N, Friedman C, Markatou M. Automated knowledge acquisition from clinical reports. AMIA A
Proc. 2008. p. 783-7. PMCID: PMC2656103.
Please contact friedman@dbmi.columbia.edu for any questions regarding the knowledge database.
Disease Count of Disease
UMLS:C0020538_hypertensive disease
UMLS:C0011847_diabetes
UMLS:C0011570_depression mental^UMLS:C0011581_depressive disorder
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8/25/24, 12:50 AM Disease
UMLS:C0010054_coronary arteriosclerosis^UMLS:C0010068_coronary heart disease
UMLS:C0032285_pneumonia
UMLS:C0018802_failure heart congestive
UMLS:C0038454_accident cerebrovascular
UMLS:C0004096_asthma
UMLS:C0027051_myocardial infarction
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8/25/24, 12:50 AM Disease
UMLS:C0020443_hypercholesterolemia
UMLS:C0021311_infection
UMLS:C0042029_infection urinary tract
UMLS:C0002871_anemia
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8/25/24, 12:50 AM Disease
UMLS:C0024117_chronic obstructive airway disease
UMLS:C0497327_dementia
UMLS:C1565489_insufficiency renal
UMLS:C0009676_confusion
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8/25/24, 12:50 AM Disease
UMLS:C0029408_degenerative polyarthritis
UMLS:C0020676_hypothyroidism
UMLS:C0700613_anxiety state
UMLS:C0006826_malignant neoplasms^UMLS:C1306459_primary malignant neoplasm
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8/25/24, 12:50 AM Disease
UMLS:C0001175_acquired immuno-deficiency syndrome^UMLS:C0019682_HIV^UMLS:C0019693_hiv infections
UMLS:C0007642_cellulitis
UMLS:C0017168_gastroesophageal reflux disease
UMLS:C0036690_septicemia^UMLS:C0243026_systemic infection^UMLS:C1090821_sepsis (invertebrate)
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8/25/24, 12:50 AM Disease
UMLS:C0149871_deep vein thrombosis
UMLS:C0011175_dehydration
UMLS:C0027651_neoplasm
UMLS:C0034065_embolism pulmonary
UMLS:C0014544_epilepsy
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8/25/24, 12:50 AM Disease
UMLS:C0878544_cardiomyopathy
UMLS:C0022661_chronic kidney failure
UMLS:C0007097_carcinoma
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8/25/24, 12:50 AM Disease
UMLS:C0019196_hepatitis C
UMLS:C0085096_peripheral vascular disease
UMLS:C0033975_psychotic disorder
UMLS:C0020473_hyperlipidemia
UMLS:C0005586_bipolar disorder
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8/25/24, 12:50 AM Disease
UMLS:C0028754_obesity
UMLS:C0022116_ischemia
UMLS:C1623038_cirrhosis
UMLS:C0015230_exanthema
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8/25/24, 12:50 AM Disease
UMLS:C0005001_benign prostatic hypertrophy
UMLS:C0022660_kidney failure acute
UMLS:C0026266_mitral valve insufficiency
UMLS:C0003864_arthritis
UMLS:C0006277_bronchitis
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8/25/24, 12:50 AM Disease
UMLS:C0018989_hemiparesis
UMLS:C0029456_osteoporosis
UMLS:C0007787_transient ischemic attack
UMLS:C0001418_adenocarcinoma
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8/25/24, 12:50 AM Disease
UMLS:C1456784_paranoia
UMLS:C0030305_pancreatitis
UMLS:C0021167_incontinence
UMLS:C0013405_paroxysmal dyspnea
UMLS:C0019270_hernia
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8/25/24, 12:50 AM Disease
UMLS:C0376358_malignant neoplasm of prostate^UMLS:C0600139_carcinoma prostate
UMLS:C0034063_edema pulmonary
UMLS:C0024228_lymphatic diseases
UMLS:C0003507_stenosis aortic valve
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8/25/24, 12:50 AM Disease
UMLS:C0006142_malignant neoplasm of breast^UMLS:C0678222_carcinoma breast
UMLS:C0036341_schizophrenia
UMLS:C0012813_diverticulitis
UMLS:C0546817_overload fluid
UMLS:C0030920_ulcer peptic
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8/25/24, 12:50 AM Disease
UMLS:C0029443_osteomyelitis
UMLS:C0017152_gastritis
UMLS:C0004610_bacteremia
UMLS:C0035078_failure kidney
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8/25/24, 12:50 AM Disease
UMLS:C0002895_sickle cell anemia
UMLS:C0018801_failure heart
UMLS:C0041912_upper respiratory infection
UMLS:C0019158_hepatitis
UMLS:C0020542_hypertension pulmonary
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8/25/24, 12:50 AM Disease
UMLS:C0011168_deglutition disorder
UMLS:C0018099_gout
UMLS:C0040034_thrombocytopaenia
UMLS:C0020615_hypoglycemia
UMLS:C0032290_pneumonia aspiration
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8/25/24, 12:50 AM Disease
UMLS:C0009319_colitis
UMLS:C1510475_diverticulosis
UMLS:C0038663_suicide attempt
UMLS:C0032305_Pneumocystis carinii pneumonia
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8/25/24, 12:50 AM Disease
UMLS:C0019163_hepatitis B
UMLS:C0030567_parkinson disease
UMLS:C0024299_lymphoma
UMLS:C0020456_hyperglycemia
UMLS:C0085584_encephalopathy
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8/25/24, 12:50 AM Disease
UMLS:C0040961_tricuspid valve insufficiency
UMLS:C0002395_Alzheimer's disease
UMLS:C0006840_candidiasis^UMLS:C0006849_oral candidiasis
UMLS:C0442874_neuropathy
UMLS:C0022658_kidney disease
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8/25/24, 12:50 AM Disease
UMLS:C0023267_fibroid tumor
UMLS:C0017601_glaucoma
UMLS:C0027627_neoplasm metastasis
UMLS:C0007102_malignant tumor of colon^UMLS:C0699790_carcinoma colon
UMLS:C0011880_ketoacidosis diabetic
UMLS:C0014549_tonic-clonic epilepsy^UMLS:C0494475_tonic-clonic seizures
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8/25/24, 12:50 AM Disease
UMLS:C0006826_malignant neoplasms
UMLS:C1145670_respiratory failure
UMLS:C0025202_melanoma
UMLS:C0017160_gastroenteritis
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8/25/24, 12:50 AM Disease
UMLS:C0242379_malignant neoplasm of lung^UMLS:C0684249_carcinoma of lung
UMLS:C0024713_manic disorder
UMLS:C0031212_personality disorder
UMLS:C0019204_primary carcinoma of the liver cells
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8/25/24, 12:50 AM Disease
UMLS:C0034067_emphysema pulmonary
UMLS:C0019112_hemorrhoids
UMLS:C0006266_spasm bronchial
UMLS:C0003537_aphasia
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8/25/24, 12:50 AM Disease
UMLS:C0028756_obesity morbid
UMLS:C0034186_pyelonephritis
UMLS:C0014118_endocarditis
UMLS:C0031039_effusion pericardial^UMLS:C1253937_pericardial effusion body substance
UMLS:C0001973_chronic alcoholic intoxication
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8/25/24, 12:50 AM Disease
UMLS:C0032326_pneumothorax
UMLS:C0011206_delirium
UMLS:C0027947_neutropenia
UMLS:C0020433_hyperbilirubinemia
UMLS:C0021400_influenza
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8/25/24, 12:50 AM Disease
UMLS:C0439857_dependence
UMLS:C0087086_thrombus
UMLS:C0008325_cholecystitis
UMLS:C0019291_hernia hiatal
UMLS:C0149931_migraine disorders
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8/25/24, 12:50 AM Disease
UMLS:C0030312_pancytopenia
UMLS:C0008350_cholelithiasis^UMLS:C0242216_biliary calculus
UMLS:C0039239_tachycardia sinus
UMLS:C1258215_ileus
UMLS:C0001511_adhesion
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8/25/24, 12:50 AM Disease
UMLS:C0011253_delusion
UMLS:C0233472_affect labile
UMLS:C0011127_decubitus ulcer
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