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Spectrometry
Background
Mass spectrometry (Mass Spec or MS)
uses high energy electrons to break a
molecule into fragments.
H H H H
-
H C C H + e + H
H C C
H H H H
m/z = 29
H H
m/z = 15 H C + C H (not detected by MS)
H H
Background
Molecular ion (parent ion):
The radical cation corresponding to the
mass of the original molecule
H H H
H C H H C C H
H H H
The molecular ion is usually the highest
mass in the spectrum
Some exceptions w/specific isotopes
Some molecular ion peaks are absent.
Background
Mass spectrum of ethanol (MW = 46)
M+
2-bromopropane
M+ ~ M+2
Cl M+
M+2
M+
S
Unusually
large M+2
ICH2CN I+
H H H
H C Br H C H C
or
M+
Fragmentation Patterns
Aromatics may also have a peak at m/z = 77 for
the benzene ring.
77
NO2
M+ = 123
77
Fragmentation Patterns
Alcohols
Fragment easily resulting in very small or
missing parent ion peak
May lose hydroxyl radical or water
M+ - 17 or M+ - 18
Commonly lose an alkyl group attached to
the carbinol carbon forming an oxonium
ion.
1o alcohol usually has prominent peak at
m/z = 31 corresponding to H2C=OH+
Fragmentation Patterns
MS for 1-propanol
CH3CH2CH2OH
H2C OH
M+-18 M+
72
Fragmentation Patterns
Ethers
-cleavage forming oxonium ion
MS of diethylether (CH3CH2OCH2CH3)
H O CHCH3
Fragmentation Patterns
Aldehydes (RCHO)
Fragmentation may form acylium ion
RC O
Common fragments:
M+ - 1 for RC O
H H O
C C C H
M+ = 134
H H
133 105
91
Loss of R’ forming RC O
Fragmentation Patterns O
CH3CCH2CH2CH3
MS for 2-pentanone
CH3C O
CH3CH2CH2C O
M+
Loss of R’
peak at M+ - R’
Frgamentation Patterns
77 105
O
C O CH3
77
M+ = 136
105
Step 1: n = 106/13 = 8 (R = 2)
Step 2: m = 8 + 2 = 10
Formula: C8H10
Rule of Thirteen
If a heteroatom is present,
Subtract the mass of each heteroatom
from the MW
Calculate the formula for the
corresponding hydrocarbon
Add the heteroatoms to the formula
Rule of Thirteen
Example: A compound with a molecular ion
peak at m/z = 102 has a strong peak at
1739 cm-1 in its IR spectrum. Determine
its molecular formula.
GC-Mass Spec: Experiment 23
Mass Spec can be combined with gas
chromatography to analyze mixtures of
compounds.
GC separates the components of the
mixture.
Each component is analyzed by the
Mass Spectrometer.
GC-Mass Spec: Experiment 23
Assignment:
Observe the GC-mass spec experiment
Record experimental conditions