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To measure distance/angle/torsion angle: o type "set picking distance", then pick two atoms
o o
type "set picking angle", then pick three atoms type "set picking torsion", then pick four atoms
To trace the chain: 1. select * 2. trace 3. trace off [turn off trace]
To select nucleic acids/proteins only: select [nucleic|protein] To select residues and label, change colors, and highlight them: 0. select mmm,nnn,ooo,ppp,..., then go to the menu and select "Options Labels" 1. color yellow/green/blue/orange/... 2. wireframe/backbone/ribbons 60/80/200/400/...
select within(4.5, nnn) Example) select within(8.5, 500) select within(4.5, mmm-nnn) Example) select within(30.0, 500-600)
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To label a specific atom using the E. coli, T. thermophilus, or H. marismortui numbers (this requires you to select positions manually by going through the PDB file and manually interconvert to type in the numbers)" 0. select atomno=xxx, then 1. label "nnn"