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INNOVATION

NMR
, , ,
. * & **
,
*E. , **. ,

NMR (Nuclear Magnetic Resonance)




-, ,
.

NMR


.
NMR 1946 Felix
Bloch, Edward Purcell 1. ,
, 1H, 13C 15N,

spins
, .
(spin-spin coupling)

62

(dipoledipole coupling).
, ( , , ..).
.


. : = ((wl-w)/w)
x106, ppm (parts per million)
w
.
Nuclear Overhauser Effect (NOE). Overhauser ()2
( ) ,
. , spins.




(5.0-5.51) .
NMR 3
(NOESY)4

( 11)5.

-,
.
spins.

spin 6.
: () spin- (spin-lattice relaxation, 1),



() spin-spin (spin-spin
relaxation, 2),
, NMR (line broadening).

1

NMR.
*


NMR

STD, WaterLOGSY

5-10g

19,21

500g

12

250g

3,20

15



NMR


,
( 1 & 1)5.
2.000 NMR
Protein Data Bank7, NMR , 8.

NMR
,
: , / . ,
,
. ,
(screening) .
NMR

N-1H


13

C H3

* STD WaterLOGSY .
.
30kDa NMR probe 5mm 500-l. , NMR 1-10 . M cryoprobes NMR (.. Shigemi
tubes).

,
,
. NMR

.

- (, , ..) 15 / 13C ( 1). 15 13C NMR

(1). - (1-1) - (113
C/15N) NMR 2, 3, 4


- (,
DNA/RNA)
,

. ,
(~1/r6),

,

( 1-1).
,

( ,
, -,
, ,
..).

// , NMR , / .
,

63

INNOVATION

1. NMR . () NOESY ( )
. () 40 c (cyt c) , NOESY5. () NMR
40 . () (cyt c),
.

, (1 & 2 ).

, '
(. 2)9.
NMR ( 2D 1H-1H, 15-1 / 13C-1H) (
ppm)
.

64

.
,
,
NMR.
()

(-, .
3)

( ),
NMR
,


( 3). ,

,

(
3).
-, ,
Kd<10-5 M -.
,
-



Kd10-8. Kd~10-6-10-8

. NMR, , ,

.


.

(koff) ,
(d).
:
()
NMR ( )

() .
, ( /)
( 3A-).


(1-10 0,5 mL ), .

NMR

SARbyNMR: SARbyNMR 10-11
(structure-activity relationship by
nuclear magnetic resonance)



.
SARbyNMR () 15 1H ,


.
, [151
]-HSQC 15
, .

,
-

2. NMR. ()
1-15 HSQC 22 13 9. () 1-15 NMR. .

, R ,
. ,
-
,
(R

) .

,
. -




- (
), [1-1]NOESY . ,
. ,
, -
,


,
.
: SARbyNMR

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INNOVATION
IC50 15 n11. , 12
1.000 100 300 Da ,
300 ,
NMR

(
cryoprobe) / .
SHAPES: 13 SHAPES

(
300 )
.
(shapes) , -
.

(scaffolds)
14. ( d
mM)

. ,
,


, SHAPES
. (SHAPES

66

hits) . (virtual
screening) (docking simulations)

-
.
: SHAPES 13 ,
.

p38, SHAPES p38.
NMR-SOLVE: H NMR-SOLVE (Structurally
Orientated
Library
Valency
Engineering)15 ,

.
NMRSOLVE
-
( ). NMR-SOLVE
2D/3D
NMR
13C 15 -

.
13C-1
15 1-15 .

NMR-SOLVE
/ .
: NMR-SOLVE

,



. NAD. , s
, NADH1516
.

[1 ,15] [1, 13C]
.
NMR-SOLVE
.

.

NMR -

.

,
.
R

.
NMR
17. ,

NMR
NMR -18.

ABSTRACT
Biomolecular NMR in Discovery and
Design of Bioactive Compounds
Natalia Tsami, Athanassios Papakyriakou,
Athanassios Galanis, Georgios .
Spyroulias & Paul Kordopatis
Department of Pharmacy, University of
Patras, GR-26500
NMR Spectroscopy has been proved a
powerful tool for studying the structure
of molecules in solution and the
determination of their threedimensional structure. It has also been
a valuable technique to monitor
dynamics of molecules in solutions and
interactions between biomac romolecules and various ligands. A
major advantage of biomolecular NMR
spectroscopy in drug discovery and
design is its ability to detect ligand

Kd=Ko/Kon=[] []/[
Kon
Ko

A
A

3. NMR . ()
(), NMR .
Kd: - , Kon: - , []: , NOE: nuclear Overhauser effect, []: .

binding even for compounds with weak


affinities. Methods for detecting
binding fall into two main categories:
those that monitor NMR signals from
the protein, such as chemical-shift
mapping, and those that monitor the
ligand, which exploit the large
differences in the rates of rotational
motions of a small molecule in the free

relative to bound-state. Additionally,


the synergistic action of biomolecular
NMR and Molecular Modeling protocols
have set an integrated platform for
drug design and discovery in academia
and industry. This article highlights the
principal NMR-based strategies for
discovery, screening and design of
bioactive compounds.


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binding to integrin IIb3, J. Med. Chem. 44, 3059-3065
(2001).
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