[ipetrov@buddy CardScan3_double_MIN_MAX_upper]$ pwd

/net/kalman.imaging.robarts.ca/kalman/kalman/ipetrov/RetroGate_kalman_ipetrov/dy
namic_phantom/CardScan3_double_MIN_MAX_upper

[ipetrov@buddy CardScan3_double_MIN_MAX_upper]$ vCTconebeam1.03_ia64 -i ./CardSc

anThree_projs_upper_double_MIN_MAX_%04d.dat -w 1024 -h 384 -b 16 -f 0 -o _raw_MI
N_MAX.vff -g ../RAW_Files_and_ANGLE_Files/CardScan3_745projs_1024x384_upper.ang
-a 512 -s 192 -r 3011.340 -C -j 1 -x 0 -y 0 -z 0 -c 1024 -d 1024 -e 745 -S 10 -I
-1000 -m 1.0 -n

vCTconebeam1.03_ia64 -i ./CardScanThreeLogged_projs_upper_double_MIN_MAX_%04d.da
t -w 1024 -h 384 -b 16 -f 0 -o _raw_MIN_MAX.vff -g ../RAW_Files_and_ANGLE_Files/
CardScan3_745projs_1024x384_upper.ang -a 512 -s 192 -r 3011.340 -C -j 1 -x 0 -y
0 -z 0 -c 1024 -d 1024 -e 745 -S 1 -I 0 -v

***************************************************8
CHOSEN 646 PROJECTIONS FROM TOTAL OF 1480 PROJECTIONS
OF ALL THE 5 SCANS

vCTconebeam1.03_ia64 -i ./CardScan_ChosenProj_upper_%04d.dat -w 1024 -h 384 -b 1

6 -f 0 -o _raw_MIN_MAX.vff -g ../RAW_Files_and_ANGLE_Files/CardScan3_745projs_10
24x384_upper.ang -a 512 -s 192 -r 3011.340 -C -j 1 -x 0 -y 0 -z 0 -c 1024 -d 102
4 -e 745 -S 1 -I 0 -v

CHOSEN 298 PROJECTIONS FROM SCAN1 _O N L Y_

-rwxrwxrwx 1 davidgrpadmin users 786448 2010-03-02 16:42 CardScan1_ChosenPro
j_upper_0296.raw*
[ipetrov@buddy CardScan1_RAW_750_Files]$ vCTconebeam1.03_ia64 -i ./CardScan1_
ChosenProj_upper_%04d.raw -w 1024 -h 384 -b 16 -f 0 -o _raw_MIN_MAX.vff -g ./Ang
les_CardScan1_RAW_750_Files.ang -a 512 -s 192 -r 3011.340 -C -j 1 -x 0 -y 0 -z 0
-c 1024 -d 1024 -e 745 -S 1 -I 0 -v

******************************************************

creat
bright.dat
dark.dat
with cpp program in /ivailo/tmp/generateBrightAndDark.cpp
divide each number in each projection by 2
for scan3:
 angle file
bright.dat
dark.dat
*.raw (with no number > 32k b/c everything was divided by 2)
[ipetrov@buddy CardScan3_RAW_297_Files]$ vCTconebeam1.03_ia64 -i ./CardSca
n_ChosenProj_upper_%04d.raw -w 1024 -h 384 -b 16 -f 0 -o _raw_Bright_Dark_Divide
by2.vff -g ./Angles_CardScan3_RAW_295_Files.ang -a 512 -s 192 -r 3011.340 -B ./b
right.dat -D ./dark.dat -R30 -j 1 -x 0 -y 0 -z 0 -c 1024 -d 1024 -e 745 -S 53138
0.493072 -I -1081.0309565 -v

vCTconebeam version vCT 1.03 (LINUX)

Not Using already logged images!
Reading file ./convertedAngleFile.ang
Based on the first two angles -- Angle1: 0.004000 Angle2: 0.024000
The angle increment is: 0.020000
And the 'angle equality threshold' is: 0.005000
Reading file ./bright.dat
Reading file ./dark.dat
title =
y_kdimu = 1024
z_kdimu = 384
y_kdim = 1043
z_kdim = 384
nang = 294
axisu = 512.000000
axis = 521.000000
central_sliceu = 192.000000
rfan = 3011.340088
angle_increment = 1.226935
filter_size = 2048
x origin of reconstruction matrix = 0
y origin of reconstruction matrix = 0
z origin of reconstruction matrix = 0
x size of reconstruction matrix = 1024
y size of reconstruction matrix = 1024
z size of reconstruction matrix = 384
Rescale slope being used = 531380.500000
Rescale intercept being used = -1081.031006
Absolute angle values selected
Full 360 degree reconstruction selected
Filtering in frequency space
***Reading file ./CardScan_ChosenProj_upper_0000.raw