Professional Documents
Culture Documents
University
Nanded
School of Technology
Sub Centre, Latur
CGPA system
Presently the School conducts M.Sc. Bioinformatics (CGPA) Post-Graduate Courses as per
CGPA = CUMULATIVE GRADE POINT AVERAGE
A Cumulative Grade Point Average (CGPA) is the mean Grade Point Average (GPA) from all
academic terms within a given academic year, whereas the GPA may only refer to one term.
Courses
Sr. No Name of the Program Duration Intake
I M. Sc. [Bioinformatics]- CGPA 2 Years 30 (Seat)
Semester I
CODE NO NAME OF PAPER INTERNAL EXAM / INTERNA TO
DEPARTMENT LEVEL L EXAM TA
CREDIT CREDITS L
CR
EDI
TS
14 14 28
Semester IV
CODE NO NAME OF PAPER INTERNAL EXAM / INTERNAL TOTAL
DEPARTMENT EXAM CREDITS
LEVEL CREDIT CREDITS
14 14 28
Text Books:
Bioinformatics- Theory and Practice, N.J. Chikhale and V.S. Gomase, Himalaya Publication
House, India; 1 edition, 2007, ISBN-13: 978-81-8318-831-9
BLAST, Ian Korf, Mark Yandell, Joseph Bedell, 2003, O'Reilly
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl
Leon, 2003, O'Reilly
Bioinformatics for Geneticists, Michael Barnes, Ian C Gray (Editors), 2003, John Wiley & Sons
Bioinformatics for Dummies, Jean-Michel Claverie, Cedric Notredame, 2003, John Wiley &
Sons
Mathematics of Genome Analysis, Jerome K. Percus, 2002, Cambridge Univ Press
Bioinformatics Computing, Bryan P. Bergeron, 2002, Prentice Hall
Proteomics- Theory and Practice, V.S. Gomase and N.J. Chikhale, Himalaya Publication House,
India,1-edition, 2009, IBSN: 978-81-8488-313-8
Introduction to Bioinformatics, Teresa Attwood, David Parry-Smith, 2001, Prentice Hall
Bioinformatics: Sequence and Genome Analysis, David W. Mount, 2001, Cold Spring Harbor
Laboratory Press
Fundamental Concepts of Bioinformatics, Dan E. Krane, Michael L. Raymer, Michaeel L.
Raymer, Elaine Nicpon Marieb, 2002, Benjamin/Cummings
Essentials of Genomics and Bioinformatics, C. W. Sensen (Editor), 2002, John Wiley & Sons
Current Topics in Computational Molecular Biology (Computational Molecular Biology), Tao
Jiang, Ying Xu, Michael Zhang (Editors), 2002, MIT Press
Biostatistics
Sub. Code: BIM-103 (T)
Course Objectives: To enable the students to gain knowledge about Biostatistics.
The Biostatistics Cookbook: The Most User-Friendly Guide for the Bio/Medical Scientist, S.
Michelson and T. Schofield, Springer; 1 edition, ISBN-13: 978-0792338840, (1996).
Intuitive Biostatistics: A Nonmathematical Guide to Statistical Thinking, Harvey Motulsky,
Oxford University Press, USA, ISBN-13: 978-0199730063, (2010).
Biostatistics: The Bare Essentials 3/e (with SPSS), Norman, Geoffrey Norman, David Streiner,
BC Decker Inc; 3 edition, ISBN-13: 978-1550094008, (2008).
Biostatistics, Second Edition: A Guide to Design, Analysis and Discovery. Ronald N. Forthofer,
Eun Sul Lee, Mike Hernandez , Academic Press; 2 edition, ISBN-13: 978-0123694928,
(2006).
Fundamentals of Biostatistics, Bernard Rosner, Duxbury Press; 6 edition, ISBN-13: 978-
0534418205, (2005).
Biostatistics for the Biological and Health Sciences with Statdisk, Marc M. Triolaand and Mario
F. Triola, Addison Wesley, ISBN-13: 978-0321194367, (2005).
Introduction to Biostatistics: Second Edition, Robert R. Sokal and F. James Rohlf, Dover
Publications; 2 edition, ISBN-13: 978-0486469614, (2009).
Basic & Clinical Biostatistics (LANGE Basic Science), Beth Dawson, Robert Trapp, Robert
Trapp , McGraw-Hill Medical; 4 edition, ISBN-13: 978-0071410175, (2004).
Biostatistics, Tarum Rawat, Samuel Devlin, Kõva köide,Kirjastus: Sarup & Son, ISBN-13:
9788176258050 (2008).
Pharmaceutical Statistics: Practical and Clinical Applications, Revised and Expanded (Drugs and
the Pharmaceutical Sciences), Sanford Bolton and Charles Bon , Informa Healthcare; 4
edition, ISBN-13: 978-0824746957, (2003)
Statistical Methods in Biology , Norman T. J. and Bailey M.A., Cambridge University Press; 3
edition, ISBN-13: 978-0521469838, (1995).
Primer of Applied Regression Analysis and Analysis of Variance, 2nd edition, Glantz S.A.,
Slinker B.K., New York: McGraw-Hill, (2001)
Data Base Managements Systems Oracle
Sub. Code: BIM-104 (T)
Course Objectives: To enable the students to gain knowledge about Data Base Managements
Systems Oracle.
Text Books:
Oracle Data Guard 11g Handbook (Osborne ORACLE Press Series), Larry Carpenter, Joseph
Meeks, Charles Kim, Bill Burke, Sonya Carothers, Joydip Kundu, Mike Smith, Nitin
Vengurlekar, McGraw-Hill Osborne Media; 1 edition, ISBN-13: 978-0071621113, (2009)
Oracle General Ledger Guide: Implement a Highly Automated Financial Processing System,
Melanie Cameron, McGraw-Hill Osborne Media; 1 edition, ISBN-13: 978-0071622295,
(2009)
Database System Concepts, Avi Silberschatz, Henry F. Korth, S. Sudarshan, McGraw-Hill, ISBN
0-07-295886-3
Database Management Systems By Raghu Ramakrishnan, Johannes Gehrke, McGraw-Hill ,
ISBN: 0072465638 / 9780072465631
Fundamentals of Database Management Systems by Mark L. Gillenson, John Wiley & Sons,
ISBN-13: 9780471262978, 978-0471262978
Relational Database Management: A Systems Programming Approach, M. Papazoglou and W.
ValderPrentice Hall, ISBN-10: 0137718667
Oracle Database 11g, A Beginner's Guide, Ian Abramson, Michael Abbey, Michael Corey,
McGraw-Hill Osborne Media, ISBN-10: 0071604596
An Introduction to Database Systems, C. J. Date, Addison Wesley Longman, ISBN-10:
0201385902
Linux
Sub. Code: BIM-105 (T)
Course Objectives: To enable the students to gain knowledge about Linux.
Text Books:
Practical Guide to Fedora and Red Hat Enterprise Linux, A (5th Edition) by Mark G. Sobell,
( 2010).
Linux Bible 2010 Edition: Boot Up to Ubuntu, Fedora, KNOPPIX, Debian, openSUSE, and 13
Other Distributions, Christopher Negus, Wiley; Pap/Dvdr/C edition, ISBN-13: 978-
0470485057, (2009)
Practical Guide to Linux Commands, Editors, and Shell Programming, A (2nd Edition), Mark G.
Sobell, Prentice Hall; 2 edition, ISBN-13: 978-0131367364, (2009).
Linux Administration: A Beginner's Guide, Fifth Edition , Wale Soyinka, McGraw-Hill Osborne
Media; 5 edition, ISBN-13: 978-0071545884, (2008).
Linux Pocket Guide, Daniel J. Barrett, O'Reilly Media; 1st edition, ISBN-13: 978-0596006280,
(2004).
Linux in a Nutshell, Ellen Siever, Stephen Figgins, Robert Love, Arnold Robbins, O'Reilly
Media; 6 edition, ISBN-13: 978-0596154486, (2009).
Understanding the Linux Kernel, Third Edition, Daniel P. Bovet and Marco Cesati, O'Reilly
Media; 3 edition, ISBN-13: 978-0596005658, (2005).
Linux For Dummies, 9th Edition, Richard Blum, For Dummies; 9 edition, ISBN-13: 978-
0470467015, (2009).
Practical UNIX/Linux, Eugene Khmelevsky, Amazon Digital Services, ASIN: B001SERN5W.
Running Linux, Matthias Kalle Dalheimer and Matt Welsh, (2005).
Beginning Linux Programming by Neil Matthew and Richard Stones, (2007).
Bioinformatics Practical
Sub. Code: BIM-102 (P)
Course Objectives: To enable the students to gain knowledge about Bioinformatics.
Total Credits: 2
List of experiments
Database Searching
Nucleotide Databases -NCBI, DDBJ, EMBL, PDB, BRENDA, TrEMBL, KEGG, Microarray –
MIAME. GEO
Diseases -OMIM Database
Protein databases- PIR, UniProt
Search Engines- SRS, Entrez
BLAST, PHI-PSI- BLAST, FASTA
Sequence alignments
Local Alignments
Global Alignments
Dynamic Programming, Dot Plot
Smith-Waterman, Needleman- Wunch Algorithms,
Day Hoff Matrix, Blossum, PAM Matrices,
GAP Penalties
Multiple Sequence alignments- ClustalW, DALI
Text Books:
Bioinformatics- Theory and Practice, N.J. Chikhale and V.S. Gomase, Himalaya Publication
House, India; 1 edition, 2007, ISBN-13: 978-81-8318-831-9
Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology,
Dan Gusfield, 1997, Cambridge University Press
BLAST, Ian Korf, Mark Yandell, Joseph Bedell, 2003, O'Reilly
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl
Leon, 2003, O'Reilly
Bioinformatics for Geneticists, Michael Barnes, Ian C Gray (Editors), 2003, John Wiley & Sons
Bioinformatics for Dummies, Jean-Michel Claverie, Cedric Notredame, 2003, John Wiley &
Sons
Mathematics of Genome Analysis, Jerome K. Percus, 2002, Cambridge Univ Press
Bioinformatics Computing, Bryan P. Bergeron, 2002, Prentice Hall
Proteomics- Theory and Practice, V.S. Gomase and N.J. Chikhale, Himalaya Publication House,
India,1-edition, 2009, IBSN: 978-81-8488-313-8
Introduction to Bioinformatics, Teresa Attwood, David Parry-Smith, 2001, Prentice Hall
Bioinformatics: Sequence and Genome Analysis, David W. Mount, 2001, Cold Spring Harbor
Laboratory Press
Fundamental Concepts of Bioinformatics, Dan E. Krane, Michael L. Raymer, Michaeel L.
Raymer, Elaine Nicpon Marieb, 2002, Benjamin/Cummings
Essentials of Genomics and Bioinformatics, C. W. Sensen (Editor), 2002, John Wiley & Sons
Current Topics in Computational Molecular Biology (Computational Molecular Biology), Tao
Jiang, Ying Xu, Michael Zhang (Editors), 2002, MIT Press
Structural Bioinformatics, Philip E. Bourne, Helge Weissig (Editors), 2003, John Wiley & Sons
Protein Structure Prediction: Bioinfomatic Approach, I.F. Tsigelny, 2002, International
University Line
Introduction to Protein Architecture: The Structural Biology of Proteins, Arthur M. Lesk, 2001,
Oxford University Press
Protein Structure Prediction: Methods and Protocols, David M. Webster (Editor), 2000, Humana
Press
Introduction to Protein Structure, Carl-Ivar Branden, John Tooze, 1999, Garland Publishing
Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding,
Alan Fersht, 1999, Freeman
Biostatistics Practical
Sub. Code: BIM-103 (P)
Course Objectives: To enable the students to gain knowledge about Biostatistics, or the use of
numerical techniques to extract information from data and facts.
Total Credits: 2
List of experiments
Biostatistical Design of Medical Studies.
Descriptive Statistics.
Descriptive Methods for Categorical Data.
Descriptive Methods for Continuous Data.
Probability and Probability Models.
Random Variables and Distributions
Estimation of Parameters.
Introduction to Statistical Tests of Significance.
Comparison of Population Proportions.
Comparison of Population Means.
Correlation and Regression.
Logistic Regression.
Methods for Count Data.
Analysis of Survival Data and Data from Matched Studies.
Study Designs
Likelihood Ratios, Bayesian Methods and Multiple Hypotheses
Textbook:
The Biostatistics Cookbook: The Most User-Friendly Guide for the Bio/Medical Scientist, S.
Michelson and T. Schofield, Springer; 1 edition, ISBN-13: 978-0792338840, (1996).
Intuitive Biostatistics: A Nonmathematical Guide to Statistical Thinking, Harvey Motulsky,
Oxford University Press, USA, ISBN-13: 978-0199730063, (2010).
Biostatistics: The Bare Essentials 3/e (with SPSS), Norman, Geoffrey Norman, David Streiner,
BC Decker Inc; 3 edition, ISBN-13: 978-1550094008, (2008).
Biostatistics, Second Edition: A Guide to Design, Analysis and Discovery. Ronald N. Forthofer,
Eun Sul Lee, Mike Hernandez , Academic Press; 2 edition, ISBN-13: 978-0123694928,
(2006).
Fundamentals of Biostatistics, Bernard Rosner, Duxbury Press; 6 edition, ISBN-13: 978-
0534418205, (2005).
Biostatistics for the Biological and Health Sciences with Statdisk, Marc M. Triolaand and Mario
F. Triola, Addison Wesley, ISBN-13: 978-0321194367, (2005).
Introduction to Biostatistics: Second Edition, Robert R. Sokal and F. James Rohlf, Dover
Publications; 2 edition, ISBN-13: 978-0486469614, (2009).
Basic & Clinical Biostatistics (LANGE Basic Science), Beth Dawson, Robert Trapp, Robert
Trapp , McGraw-Hill Medical; 4 edition, ISBN-13: 978-0071410175, (2004).
Biostatistics, Tarum Rawat, Samuel Devlin, Kõva köide,Kirjastus: Sarup & Son, ISBN-13:
9788176258050 (2008).
Pharmaceutical Statistics: Practical and Clinical Applications, Revised and Expanded (Drugs and
the Pharmaceutical Sciences), Sanford Bolton and Charles Bon , Informa Healthcare; 4
edition, ISBN-13: 978-0824746957, (2003)
Statistical Methods in Biology , Norman T. J. and Bailey M.A., Cambridge University Press; 3
edition, ISBN-13: 978-0521469838, (1995).
Primer of Applied Regression Analysis and Analysis of Variance, 2nd edition, Glantz S.A.,
Slinker B.K., New York: McGraw-Hill, (2001)
Data Base Managements Systems Oracle Practical
Sub. Code: BIM-104 (P)
Course Objectives: To enable the students to gain knowledge about Data Base Managements
Systems Oracle.
Total Credits: 2
List of experiments
Oracle Database Administration
Installing Oracle Database Software
Creating and Controlling Oracle Databases
Administering Users
Managing Schema Objects and Data
Implementing Oracle Security Features
Monitoring Performance
Performing Database Backup and Recovery
Basic PL/SQL Concepts.
Laying the Groundwork: PL/SQL Fundamentals.
Controlling Program Flow.
Handling Exceptions.
Standards and Structures.
Creating Naming Standards.
Creating Coding Standards.
PL/SQL Data Manipulations.
Basic Datatypes.
Advanced Datatypes.
Transaction Control.
Dynamic SQL and PL/SQL.
Text Books:
Oracle Data Guard 11g Handbook (Osborne ORACLE Press Series), Larry Carpenter, Joseph
Meeks, Charles Kim, Bill Burke, Sonya Carothers, Joydip Kundu, Mike Smith, Nitin
Vengurlekar, McGraw-Hill Osborne Media; 1 edition, ISBN-13: 978-0071621113, (2009)
Oracle General Ledger Guide: Implement a Highly Automated Financial Processing System,
Melanie Cameron, McGraw-Hill Osborne Media; 1 edition, ISBN-13: 978-0071622295,
(2009)
Database System Concepts, Avi Silberschatz, Henry F. Korth, S. Sudarshan, McGraw-Hill, ISBN
0-07-295886-3
Database Management Systems By Raghu Ramakrishnan, Johannes Gehrke, McGraw-Hill ,
ISBN: 0072465638 / 9780072465631
Fundamentals of Database Management Systems by Mark L. Gillenson, John Wiley & Sons,
ISBN-13: 9780471262978, 978-0471262978
Relational Database Management: A Systems Programming Approach, M. Papazoglou and W.
ValderPrentice Hall, ISBN-10: 0137718667
Oracle Database 11g, A Beginner's Guide, Ian Abramson, Michael Abbey, Michael Corey,
McGraw-Hill Osborne Media, ISBN-10: 0071604596
An Introduction to Database Systems, C. J. Date, Addison Wesley Longman, ISBN-10:
0201385902
Linux Practical
Sub. Code: BIM-105 (P)
Course Objectives: To enable the students to gain knowledge about Linux.
Total Credits: 2
List of experiments
Working with Linux.
Toolchains, Portability.
Software Configuration Management.
Network Programming.
Databases.
Kernel Development.
Kernel Interfaces.
Linux Kernel Modules.
The shell – command line, file name, encapsulation, standards output/ input, shell variables,
pipes
Linux File Structure
Shell configuration
Client Applications and Server managements
Basic of system administration
Boot management tools,
Managing users,
Software managements,
File system administration,
Devices and Printers
Kernel Administration,
Configuration of Network connection
NFS, NIS, Applets Table,
Samba, Administrating TCP / IP Networks,
Network Security, Firewalls, authentications
Text Books:
Practical Guide to Fedora and Red Hat Enterprise Linux, A (5th Edition) by Mark G. Sobell,
( 2010).
Linux Bible 2010 Edition: Boot Up to Ubuntu, Fedora, KNOPPIX, Debian, openSUSE, and 13
Other Distributions, Christopher Negus, Wiley; Pap/Dvdr/C edition, ISBN-13: 978-
0470485057, (2009)
Practical Guide to Linux Commands, Editors, and Shell Programming, A (2nd Edition), Mark G.
Sobell, Prentice Hall; 2 edition, ISBN-13: 978-0131367364, (2009).
Linux Administration: A Beginner's Guide, Fifth Edition , Wale Soyinka, McGraw-Hill Osborne
Media; 5 edition, ISBN-13: 978-0071545884, (2008).
Linux Pocket Guide, Daniel J. Barrett, O'Reilly Media; 1st edition, ISBN-13: 978-0596006280,
(2004).
Linux in a Nutshell, Ellen Siever, Stephen Figgins, Robert Love, Arnold Robbins, O'Reilly
Media; 6 edition, ISBN-13: 978-0596154486, (2009).
Understanding the Linux Kernel, Third Edition, Daniel P. Bovet and Marco Cesati, O'Reilly
Media; 3 edition, ISBN-13: 978-0596005658, (2005).
Linux For Dummies, 9th Edition, Richard Blum, For Dummies; 9 edition, ISBN-13: 978-
0470467015, (2009).
Practical UNIX/Linux, Eugene Khmelevsky, Amazon Digital Services, ASIN: B001SERN5W.
Running Linux, Matthias Kalle Dalheimer and Matt Welsh, (2005).
Beginning Linux Programming by Neil Matthew and Richard Stones, (2007).
Swami Ramanand Teerth
Marathwada University
Nanded
School of Technology
Sub Centre, Latur
Course Objectives: To enable the students to gain knowledge about Computational Biology.
Text Books:
Bioinformatics- Theory and Practice, N.J. Chikhale and V.S. Gomase, Himalaya Publication
House, India; 1 edition, 2007, ISBN-13: 978-81-8318-831-9
Proteomics- Theory and Practice, V.S. Gomase and N.J. Chikhale, Himalaya Publication House,
India,1-edition, 2009, IBSN: 978-81-8488-313-8
BLAST, Ian Korf, Mark Yandell, Joseph Bedell, 2003, O'Reilly
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl
Leon, 2003, O'Reilly
Bioinformatics for Geneticists, Michael Barnes, Ian C Gray (Editors), 2003, John Wiley & Sons
Bioinformatics for Dummies, Jean-Michel Claverie, Cedric Notredame, 2003, John Wiley &
Sons
Mathematics of Genome Analysis, Jerome K. Percus, 2002, Cambridge Univ Press
Bioinformatics Computing, Bryan P. Bergeron, 2002, Prentice Hall
Introduction to Bioinformatics, Teresa Attwood, David Parry-Smith, 2001, Prentice Hall
Bioinformatics: Sequence and Genome Analysis, David W. Mount, 2001, Cold Spring Harbor
Laboratory Press
Fundamental Concepts of Bioinformatics, Dan E. Krane, Michael L. Raymer, Michaeel L.
Raymer, Elaine Nicpon Marieb, 2002, Benjamin/Cummings
Essentials of Genomics and Bioinformatics, C. W. Sensen (Editor), 2002, John Wiley & Sons
Current Topics in Computational Molecular Biology (Computational Molecular Biology), Tao
Jiang, Ying Xu, Michael Zhang (Editors), 2002, MIT Press
Immunoinformatics
Sub. Code: BIM-203 (T)
Text Books:
Immunobiotechnology, Virendra Gomase and Sunilkumar Dwivedi, VDM Verlag Dr. Müller,
Germany, ISBN: 978-3-639-25017-6, (2010).
Immunoinformatics: Shoba Ranganathan, Vladimir Brusic, Christian Schonbach, ISBN:
0387729674, Springer, (2007).
Immunoinformatics: Darren R Flower, ISBN: 1588296997, Humana Press, (2007).
Immunology: Richard A. Goldsby, Thomas J. Kindth, Barbara A, Osborne, Janis Kuby, W. H.
Freeman & Company, 5th Edition (2003).
Roitt’s Essential Immunology: Ivan M. Roitt, Peter J. Delves Blackwell Science Ltd., 10th
Edition (2001)
An Introduction to Immunology: C.V. Rao; Narosa Publishing House,1st Edition (2004)
Instant Notes in Immunology; P.M. Lydyard, A. Whelan, M.W. Fanger BIOS Scientific
Publishers Ltd, 1st Edition (2003)
Textbook of Microbiology: R. Ananthnarayan, C. K. J. Panicker, Orient Longman , 6th Edition
(2003)
Immunology: Introductory Textbook; Nandini Shetty, New Age International pvt. Ltd. 1st
Edition (2003)
Chemoinformatics
Sub. Code: BIM-204 (T)
Course Objectives: To enable the students to gain knowledge about Computers in Chemical
Research.
Text Books:
Encyclopedia of Drug Design (11 Volumes), Virendra Gomase and Shruti Gomase, ISBN:978-9-
380-02632-9, IK International Publishing House Pvt. Ltd
Computer Applications in Pharmaceutical Research and Development, Wang, Binghe, ISBN-10:
0-471-73779-8, John Wiley and Sons India Pvt. Ltd.
Quantitative molecular pharmacology and informatics in drug discovery, Michael Lutz and Jerry
Kenatin, ISBN-10: 0471988618, John Wiley and Sons India Pvt. Ltd.
RNA Interference Technology- From Basic Science to Drug Development, Krishnarao Appasani,
ISBN: 13:9780521836777, Cambridge University Press India Private Limited
microRNAs: From Basic Science to Disease Biology, Krishnarao Appasani, ISBN-13:
9780521865982, Cambridge University Press India Private Limited
Microarray Bioinformatics, Dov Stekel, ISBN:13:9780521525879, Cambridge University Press
India Private Limited
Medical Informatics & Telemedicine: Recent Advances, J Mukhopadhyay,
ISBN:9780230630185, Macmillan India Limited
Nanotechnology in Biology and Medicine Methods, Devices, and Applications, Tuan Vo-Dinh,
ISBN: 0849329494, I.K. International Publishing House Pvt. Ltd
Molecular pharmacology a short course, Jerry Kenatin, ISBN-10: 086542540X, John Wiley and
Sons India Pvt. Ltd.
Pharmaceutical Drug Analysis, Ashutosh Kar, ISBN:9788122415827, New Age International (P)
Ltd., Publishers
Stereochemistry of Organic Compounds, Ernest L. Eliel, Samuel H. Wilen, ISBN: 978-0-471-
01670-0, John Wiley and Sons India Pvt. Ltd.
Organic Chemistry, T. W. Graham Solomons, Craig B. Fryhle, ISBN: 978-0-471-68496-1, John
Wiley and Sons India Pvt. Ltd.
Stereochemistry, David G. Morris, ISBN: 978-0-471-22477-8, John Wiley and Sons India Pvt.
Ltd.
Machine Intelligence in Bioinformatics
Sub. Code: BIM-205 (T)
Course Objectives: To enable the students to gain knowledge about Machine Intelligence.
Unit -IV: Monte Carlo and Bayesian approaches in data mining (9L)
Data mining models and data streams
Bayesian techniques and current biological research
Statistical alignment MCMC workbench
Models of computational analysis
Markov Chain Monte Carlo
Bayesian phylogenetics
RNA substitution model and early mammalian evolution
Advantages of Bayesian applications
Total Credits: 2
List of experiments
Information retrieval and analysis of database i.e. IMGT/HLA IPD, SYEPEITHI
Information retrieval and analysis of database i.e. MHCBN, JenPep
Immunoinformatics Methods
MHC Prediction
Predicting Peptide-MCH Binding
MCH binders prediction
TAP binders prediction
MHC similarities, and predicting virulence factors
B-cell epitopes prediction
T-Cell epitopes prediction
Class I and II MHC prediction methods
HLA-peptide binding
Text Books:
Immunobiotechnology, Virendra Gomase and Sunilkumar Dwivedi, VDM Verlag Dr. Müller,
Germany, ISBN: 978-3-639-25017-6, (2010).
Immunoinformatics: Shoba Ranganathan, Vladimir Brusic, Christian Schonbach, ISBN:
0387729674, Springer, (2007).
Immunoinformatics: Darren R Flower, ISBN: 1588296997, Humana Press, (2007).
Immunology: Richard A. Goldsby, Thomas J. Kindth, Barbara A, Osborne, Janis Kuby, W. H.
Freeman & Company, 5th Edition (2003).
Roitt’s Essential Immunology: Ivan M. Roitt, Peter J. Delves Blackwell Science Ltd., 10th
Edition (2001)
An Introduction to Immunology: C.V. Rao; Narosa Publishing House,1st Edition (2004)
Instant Notes in Immunology; P.M. Lydyard, A. Whelan, M.W. Fanger BIOS Scientific
Publishers Ltd, 1st Edition (2003)
Textbook of Microbiology: R. Ananthnarayan, C. K. J. Panicker, Orient Longman , 6th Edition
(2003)
Immunology: Introductory Textbook; Nandini Shetty, New Age International pvt. Ltd. 1st
Edition (2003)
Chemoinformatics Practical
Sub. Code: BIM -204 (P)
Course Objectives: To enable the students to gain knowledge about Chemoinformatics is an
emerging sub discipline of bioinformatics.
Total Credits: 2
List of experiments
Text Books:
Computer Applications in Pharmaceutical Research and Development, Wang, Binghe, ISBN-10: 0-471-
73779-8, John Wiley and Sons India Pvt. Ltd.
Quantitative molecular pharmacology and informatics in drug discovery, Michael Lutz and Jerry Kenatin,
ISBN-10: 0471988618, John Wiley and Sons India Pvt. Ltd.
RNA Interference Technology- From Basic Science to Drug Development, Krishnarao Appasani, ISBN:
13:9780521836777, Cambridge University Press India Private Limited
microRNAs: From Basic Science to Disease Biology, Krishnarao Appasani, ISBN-13: 9780521865982,
Cambridge University Press India Private Limited
Microarray Bioinformatics, Dov Stekel, ISBN:13:9780521525879, Cambridge University Press India
Private Limited
Medical Informatics & Telemedicine: Recent Advances, J Mukhopadhyay, ISBN:9780230630185,
Macmillan India Limited
Nanotechnology in Biology and Medicine Methods, Devices, and Applications, Tuan Vo-Dinh, ISBN:
0849329494, I.K. International Publishing House Pvt. Ltd
Molecular pharmacology a short course, Jerry Kenatin, ISBN-10: 086542540X, John Wiley and Sons
India Pvt. Ltd.
Pharmaceutical Drug Analysis, Ashutosh Kar, ISBN:9788122415827, New Age International (P) Ltd.,
Publishers
Stereochemistry of Organic Compounds, Ernest L. Eliel, Samuel H. Wilen, ISBN: 978-0-471-01670-0,
John Wiley and Sons India Pvt. Ltd.
Organic Chemistry, T. W. Graham Solomons, Craig B. Fryhle, ISBN: 978-0-471-68496-1, John Wiley and
Sons India Pvt. Ltd.
Machine Intelligence in Bioinformatics Practical
Sub. Code: BIM-205 (P)
Course Objectives: To enable the students to gain knowledge about Machine Intelligence
techniques, algorithms in bioinformatics.
Total Credits: 2
List of experiments
Data mining in genomics
Gene expression data mining
Data mining in proteomics
RNA secondary structure comparison and alignment
Minimum free-energy method for RNA secondary structure prediction
Gene mapping by pattern discovery
Data mining: predicting protein folding pathways
Data mining methods for a systematic of protein subcellular location
Sequence homology
Sequences alignments
Structure alignments
Motif involve in protein targeting
Ab initio method prediction from sequence
Mining chemical compounds
Text Books:
Bioinformatics- Theory and Practice, N.J. Chikhale and V.S. Gomase, Himalaya Publication House, India;
1 edition, 2007, ISBN-13: 978-81-8318-831-9
Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology, Dan
Gusfield, 1997, Cambridge University Press
BLAST, Ian Korf, Mark Yandell, Joseph Bedell, 2003, O'Reilly
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases, Scott Markel, Darryl Leon,
2003, O'Reilly
Bioinformatics for Geneticists, Michael Barnes, Ian C Gray (Editors), 2003, John Wiley & Sons
Bioinformatics for Dummies, Jean-Michel Claverie, Cedric Notredame, 2003, John Wiley & Sons
Mathematics of Genome Analysis, Jerome K. Percus, 2002, Cambridge Univ Press
Bioinformatics Computing, Bryan P. Bergeron, 2002, Prentice Hall
Proteomics- Theory and Practice, V.S. Gomase and N.J. Chikhale, Himalaya Publication House, India,1-
edition, 2009, IBSN: 978-81-8488-313-8
Introduction to Bioinformatics, Teresa Attwood, David Parry-Smith, 2001, Prentice Hall
Bioinformatics: Sequence and Genome Analysis, David W. Mount, 2001, Cold Spring Harbor Laboratory
Press
Fundamental Concepts of Bioinformatics, Dan E. Krane, Michael L. Raymer, Michaeel L. Raymer, Elaine
Nicpon Marieb, 2002, Benjamin/Cummings
Essentials of Genomics and Bioinformatics, C. W. Sensen (Editor), 2002, John Wiley & Sons
Current Topics in Computational Molecular Biology (Computational Molecular Biology), Tao Jiang,
Ying Xu, Michael Zhang (Editors), 2002, MIT Press
Numerical Methods and Optimization Techniques Practical
Sub. Code: BIM -206 (P)
Course Objectives: To enable the students to gain knowledge about Numerical Methods and
Optimization Techniques Practical, algorithms in bioinformatics.
Total Credits: 2
List of experiments
Engineering Optimization Methods and Principles
Optimization and Programming
Optimization Techniques
Numerical Analysis
Application of Optimization Techniques
Numerical Methods & Optimization
Coordinate descent and subgradient method
Optimization and Cutting Plane Methods
Babylonian, Restricted step methods and Non linear equations
Linearly Constrained Optimization Techniques
Text Books:
Gilat Amos (2004) MATLAB: An Introduction with Applications (2nd edition ed.). John Wiley
& Sons. ISBN 0-471-69420-7.
Hildebrand F. B. (1974) Introduction to Numerical Analysis (2nd edition ed.). McGraw-Hill.
ISBN 0-070-28761-9.
Leader Jeffery J. (2004) Numerical Analysis and Scientific Computation. Addison Wesley. ISBN
0-201-73499-0.
Trefethen Lloyd N. (2006) "Numerical analysis", 20 pages. In: Timothy Gowers and June
Barrow-Green (editors), Princeton Companion of Mathematics, Princeton University
Press
Marti K. (2002) Stochastic Optimization Techniques: Numerical Methods And Technical
Applications, ISBN: 3540428895, Springer
Emmanuel Le Tallec Patrick, Numerical Methods In Sensitivity Analysis And Shape
Optimization, {with Cd-rom}, ISBN: 0817643222, (2003), Birkhauser
Swami Ramanand Teerth Marathwada
University
Nanded
School of Technology
Sub Centre, Latur
Text Book:
Computer Applications in Pharmaceutical Research and Development, Wang, Binghe, ISBN-10:
0-471-73779-8, John Wiley & Sons India Pte. Ltd.
Engineering Chemistry, R.V. Gadag and A. Nityananda Shetty, ISBN: 8188237833, I.K.
International Publishing House Pvt. Ltd
Quantum Chemistry and Spectroscopy, Engel, ISBN: 9788131712856, Pearson Education
Quantum Chemistry, Ira N. Levine, ISBN: 8120330641, Prentice-Hall of India
An Introduction to Drug Design, S.N. Pandeya, New Age International (P) Ltd., Publishers
Pharmaceutical Organic Chemistry, Rama Rao Nadendla, ISBN: 9781403924957, Macmillan
India Limited
Virtual Screening in Drug Discovery, Juan Alvarez and Brian Shoichet, ISBN-13: 978-
0824754792, CRC Press
Biological Thermodynamics, Donald T. Haynie, ISBN:9780521704045, Cambridge University
Press India Private Limited
Stereochemistry of Organic Compounds, Ernest L. Eliel, Samuel H. Wilen, ISBN: 978-0-471-
01670-0, John Wiley and Sons India Pvt. Ltd.
Organic Chemistry, T. W. Graham Solomons, Craig B. Fryhle, ISBN: 978-0-471-68496-1, John
Wiley and Sons India Pvt. Ltd.
Chemoinformatics, Gasteiger, Johann / Engel, Thomas (eds.), ISBN-13: 978-3-527-30681-7,
John Wiley & Sons India Pte. Ltd.
Chemoinformatics in Drug Discovery, Tudor I. Oprea, Raimund Mannhold, Hugo Kubinyi, Gerd
Folkers, ISBN: 978-3-527-30753-1, John Wiley & Sons India Pte. Ltd.
Handbook of Chemoinformatics: From Data to Knowledge, Johann Gasteiger, ISBN: 978-3-527-
30680-0, John Wiley & Sons India Pte. Ltd.
An Introduction to Computational Biochemistry, C. Stan Tsai, ISBN: 978-0-471-40120-9, John
Wiley & Sons India Pte. Ltd.
Object oriented Programming (OOPS) JAVA
Sub. Code: BIM-302 (T)
Course Objectives: To enable the students to gain knowledge about Object oriented Programming
(OOPS) JAVA.
Text Books:
Java How to Program (How to Program (Deitel), Harvey & Paul, Deitel & Deitel, Prentice Hall,
ISBN-10: 0131483986
Java In A Nutshell, David Flanagan, O'Reilly Media; ISBN-10: 0596007736
Programming With Java A Primer by Balagurusamy, TMH, ISBN: 0074625425
Java 2: The Complete Reference, Herbert Schildt, McGraw-Hill Osborne Media, ISBN-10:
0070495432
Mastering Java 2, J2se 1.4 by Zukowski, BPB Publication, ISBN: 8176566187
Microbial Genomics
Sub. Code: BIM-303 (T)
Course Objectives: To enable the students to gain knowledge about Microbial Genomics.
Text Books:
Microbial Genomes, Fraser, Claire M, Read, Timothy, Nelson, Karen E., Humana Press, (2004).
Microbial Genome Methods, Kenneth W. Adolph, CRC Press, (1996).
Microbial Functional Genomics, Jizhong Zhou, Wiley-IEEE, (2004).
Microbial Genomics and Drug Discovery, Thomas John Dougherty, Steven J. Projan, CRC Press,
(2003).
Microbial Biodegradation: Genomics and Molecular Biology, Eduardo Diaz, Caister Academic
Press; 1 edition, ISBN:978-1904455172 (2008).
Computing for Comparative Microbial Genomics: Bioinformatics for Microbiologists
(Computational Biology), David W. Ussery, Trudy M. Wassenaar, Stefano Borini,
Springer; 1 edition, ISBN:978-1848002548, (2008).
Functional Microbial Genomics, Volume 33 (Methods in Microbiology), Brendan Wren, Nick
Dorrell, Academic Press; 1 edition, ISBN:978-0125215336, (2002).
Microbial Genomics and Drug Discovery, Thomas J. Dougherty, Steven J. Projan, CRC Press; 1
edition, ISBN:978-0824740412, (2003).
Text Books
Medical Pharmacology at a Glance, Michael J. Neal, ISBN: 978-1-4051-3360-9, John Wiley and
Sons India Pvt. Ltd.
Pharmacology: From Drug Development to Gene Therapy, Robert A. Meyers, ISBN: 978-3-527-
32343-2, John Wiley and Sons India Pvt. Ltd.
Essentials of Pharmacotherapeutics, Barar FSK, ISBN: 8121904447, S Chand & Company Ltd
Current Trends in Pharmacology, Arunabha Ray and Kavita Gulati, ISBN:8188237779, I.K.
International Publishing House Pvt. Ltd
The Textbook of Pharmaceutical Medicine, John P. Griffin, New Age International (P) Ltd.,
Publishers
An Introduction to Drug Design, S.N. Pandeya, ISBN : 978-81-224-0943-7, New Age
International (P) Ltd., Publishers
Medical Pharmacology at a Glance, M.J. Neal, New Age International (P) Ltd., Publishers
Katzung and Trevor's Review of Pharmacology, Anthony Trevor, Bertram Katzung, Susan
Masters, ISBN13: 9780071488693, McGraw-Hill
Modern Pharmacology with Clinical Applications, Charles R Craig and Robert E Stitzel, ISBN-
13: 978-0-7817-3762-3, Lippincott Williams & Wilkins
Lippincott's Illustrated Reviews: Pharmacology, ISBN-10: 0-7817-7155-2, Lippincott Williams
& Wilkins
Molecular Modeling
Sub. Code: BIM-305 (T)
Course Objectives: To enable the students to gain knowledge about Molecular Modeling.
Text Book
Molecular Modelling for Beginners, Alan Hinchliffe, ISBN: 978-0-470-51313-2, John Wiley
and Sons India Pvt. Ltd.
Molecular Physics: Theoretical Principles and Experimental Methods, Wolfgang Demtröder,
ISBN: 978-3-527-40566-4, John Wiley and Sons India Pvt. Ltd.
Biophysical Chemistry -Principles and Techniques, Upadhyay, Upadhyay and Nath, ISBN: 978-
81-8318-865-4, Himalaya Publication House
Perspective In Structural Biology , Vijayan, ISBN:978-81-7371-254-8, Orient Blackswan Private
Limited (University Press)
Fundamental of Crystal Chemistry, Tarren, ISBN:978-81-7371-297-5, Orient Blackswan Private
Limited (University Press)
Electrostatic of Atoms and Molecules, Gadre, ISBN:978-81-7371-296-8, Orient Blackswan
Private Limited (University Press)
Organic Chemistry of Natural Products-I, Gurdeep R. Chatwal, ISBN:81-8318-307-7, Himalaya
Publication House
The Art of Molecular Dynamics Simulation, 2nd Edition, D. C. Rapaport,
ISBN:13:9780521825689, Cambridge University Press India Private Limited
Molecular Reaction Dynamics, Raphael D. Levine, ISBN:9780521842761, Cambridge
University Press India Private Limited
Molecular Structure and Spectroscopy, G. Aruldhas, ISBN:9788120332157, Prentice-Hall of
India
Molecular Spectroscopy, Jeanne L. McHale, ISBN: 9788131720592, Pearson Education
Physical Chemistry, Peter Atkins and Julio De Paula, ISBN: 9780195685220, Oxford University
Press
Computer Aided Drug Design
Sub. Code: BIM-301 (P)
Course Objectives: To enable the students to gain knowledge about Computer Aided Drug Design.
Total Credits: 2
List of experiments
Representation of Molecular Structures, Molecular Shape Analysis
Chemical Nomenclature and Structure Representation
Virtual Screening, 3DQSAR Models
Molecular Dynamics and Simulation of Lead
Molecular Diversity in Lead Discovery: In Silico Lead Optimization
Databases and Libraries
Combinational Libraries Based on the Concept of Privileged Substructures
Hit-to-Lead Process: A User's Perspective
Text Book
Computer Applications in Pharmaceutical Research and Development, Wang, Binghe, ISBN-10:
0-471-73779-8, John Wiley & Sons India Pte. Ltd.
Engineering Chemistry, R.V. Gadag and A. Nityananda Shetty, ISBN: 8188237833, I.K.
International Publishing House Pvt. Ltd
Quantum Chemistry and Spectroscopy, Engel, ISBN: 9788131712856, Pearson Education
Quantum Chemistry, Ira N. Levine, ISBN: 8120330641, Prentice-Hall of India
An Introduction to Drug Design, S.N. Pandeya, New Age International (P) Ltd., Publishers
Pharmaceutical Organic Chemistry, Rama Rao Nadendla, ISBN: 9781403924957, Macmillan
India Limited
Virtual Screening in Drug Discovery, Juan Alvarez and Brian Shoichet, ISBN-13: 978-
0824754792, CRC Press
Biological Thermodynamics, Donald T. Haynie, ISBN:9780521704045, Cambridge University
Press India Private Limited
Stereochemistry of Organic Compounds, Ernest L. Eliel, Samuel H. Wilen, ISBN: 978-0-471-
01670-0, John Wiley and Sons India Pvt. Ltd.
Organic Chemistry, T. W. Graham Solomons, Craig B. Fryhle, ISBN: 978-0-471-68496-1, John
Wiley and Sons India Pvt. Ltd.
Chemoinformatics, Gasteiger, Johann / Engel, Thomas (eds.), ISBN-13: 978-3-527-30681-7,
John Wiley & Sons India Pte. Ltd.
Chemoinformatics in Drug Discovery, Tudor I. Oprea, Raimund Mannhold, Hugo Kubinyi, Gerd
Folkers, ISBN: 978-3-527-30753-1, John Wiley & Sons India Pte. Ltd.
Handbook of Chemoinformatics: From Data to Knowledge, Johann Gasteiger, ISBN: 978-3-527-
30680-0, John Wiley & Sons India Pte. Ltd.
An Introduction to Computational Biochemistry, C. Stan Tsai, ISBN: 978-0-471-40120-9, John
Wiley & Sons India Pte. Ltd.
Object oriented Programming (OOPS) JAVA
Sub. Code: BIM-302 (P)
Course Objectives: To enable the students to gain knowledge about Object oriented Programming
(OOPS) JAVA.
Total Credits: 2
List of experiments
Installing BioJava, Symbols,
Basic Sequence Manipulation (DNA to RNA, Reverse Complement, motif as regular
expression),
Translation (DNA to Protein, Codon to amino acid, Six frame translation),
Proteomics (Calculate the mass and pI of a peptide),
Sequence I/O (File Formats conversions),
Locations and Features (PointLocation, RangeLocation, Feature modifications),
BLAST and FASTA (Blast and FastA Parser, extract information from parsed results), Counts
and Distributions,
Weight Matrices and Dynamic Programming,
User Interfaces
Text Books:
Java How to Program (How to Program (Deitel), Harvey & Paul, Deitel & Deitel, Prentice Hall,
ISBN-10: 0131483986
Java In A Nutshell, David Flanagan, O'Reilly Media; ISBN-10: 0596007736
Programming With Java A Primer by Balagurusamy, TMH, ISBN: 0074625425
Java 2: The Complete Reference, Herbert Schildt, McGraw-Hill Osborne Media, ISBN-10:
0070495432
Mastering Java 2, J2se 1.4 by Zukowski, BPB Publication, ISBN: 8176566187
Bioinformatics- Theory and Practice, N.J. Chikhale and V.S. Gomase, Himalaya Publication
House, India; 1 edition, 2007, ISBN-13: 978-81-8318-831-9
Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology,
Dan Gusfield, 1997, Cambridge University Press
Mathematics of Genome Analysis, Jerome K. Percus, 2002, Cambridge Univ Press
Bioinformatics Computing, Bryan P. Bergeron, 2002, Prentice Hall
Proteomics- Theory and Practice, V.S. Gomase and N.J. Chikhale, Himalaya Publication House,
India,1-edition, 2009, IBSN: 978-81-8488-313-8
Bioinformatics: Sequence and Genome Analysis, David W. Mount, 2001, Cold Spring Harbor
Laboratory Press
Essentials of Genomics and Bioinformatics, C. W. Sensen (Editor), 2002, John Wiley & Sons
Current Topics in Computational Molecular Biology (Computational Molecular Biology), Tao
Jiang, Ying Xu, Michael Zhang (Editors), 2002, MIT Press
Microbial Genomics
Sub. Code: BIM-303 (P)
Course Objectives: To enable the students to gain knowledge about Microbial Genomics .
Total Credits: 2
List of experiments
Microbial Bioinformatics
Microbial metabolism
Genomics-Based Analysis of the Bacterial Cell Cycle
Plant pathogens
Comparative Microbial Metabolism
Microbial Genomic Analysis of Membrane Transport
Analysis of the Bacterial Cell
Plant -Microbial interaction
Text Books:
Microbial Genomes, Fraser, Claire M, Read, Timothy, Nelson, Karen E., Humana Press, (2004).
Microbial Genome Methods, Kenneth W. Adolph, CRC Press, (1996).
Microbial Functional Genomics, Jizhong Zhou, Wiley-IEEE, (2004).
Microbial Genomics and Drug Discovery, Thomas John Dougherty, Steven J. Projan, CRC Press,
(2003).
Microbial Biodegradation: Genomics and Molecular Biology, Eduardo Diaz, Caister Academic
Press; 1 edition, ISBN:978-1904455172 (2008).
Computing for Comparative Microbial Genomics: Bioinformatics for Microbiologists
(Computational Biology), David W. Ussery, Trudy M. Wassenaar, Stefano Borini,
Springer; 1 edition, ISBN:978-1848002548, (2008).
Functional Microbial Genomics, Volume 33 (Methods in Microbiology), Brendan Wren, Nick
Dorrell, Academic Press; 1 edition, ISBN:978-0125215336, (2002).
Microbial Genomics and Drug Discovery, Thomas J. Dougherty, Steven J. Projan, CRC Press; 1
edition, ISBN:978-0824740412, (2003).
Perl for Bioinformatics
Sub. Code: BIM-304 (P)
Course Objectives: To enable the students to gain knowledge about Perl for Bioinformatics.
Total Credits: 2
List of experiments
Installing Perl on Your Computer
Text Editors, Individual Approaches to Programming
Sequences and Strings, Representing Sequence Data
A Program to Store a DNA Sequence
Concatenating DNA Fragments
Transcription: DNA to RNA
Using the Perl Documentation
Calculating the Reverse Complement in Perl
Proteins, Files, and Arrays
Reading Proteins in Files
Motifs and Loops, Finding Motifs
Counting Nucleotides
Exploding Strings into Arrays
Command-Line Arguments and Arrays
Mutations and Randomization
Program Using Randomization
Program to Simulate DNA Mutation, Generating Random DNA
Data Structures and Algorithms for Biology
Translating DNA into Proteins
Reading DNA from Files in FASTA Format
Restriction Maps and Restriction Enzymes
GenBank Files
Parsing PDB Files
Obtaining BLAST
String Matching and Homology, Web Programming
Algorithms and Sequence Alignment
Microarrays and XML
Graphics Programming
Text Books:
Perl Programming for Bioinformatics & Biologists, Lab Manual D. Curtis Jamison, John Wiley
& Sons, INC., 2004.
Perl Programming for Bioinformatics, Harshawardhan P Bal, Tata McGraw Hill, 2003.
James Tisdall, Mastering Perl for Bioinformatics, O’Reilly, 2003.
Perl Programming for Bioinformatics & Biologists, D. Curtis Jamison, John Wiley & Sons,
INC., 2004.
Bioinformatics Biocomputing and Perl, Michael Moorhouse, Paul Barry, Wiley, 2004.
Swami Ramanand Teerth Marathwada
University
Nanded
School of Technology
Sub Centre, Latur
Text Books:
Plant Biotechnology: Green Revolution, Virendra Gomase and Anant Sherkhane, VDM Verlag
Dr. Müller, Germany, ISBN:978-3-639-03208-6, (2010).
Encyclopedia of Agricultural Sciences (5 Vol. Set), Virendra Gomase, Shruti Gomase, Serial
Publication, India, ISBN:978-8-183-87339-0, (2010).
Toxicogenomics, Virendra Gomase and Shruti Gomase, VDM Verlag Dr. Müller, Germany,
ISBN:978-3639249958, (2010).
Plant Genomics: Methods and Protocols (Methods in Molecular Biology), Daryl J. Somers, Peter
Langridge, J.P. Gustafson, Humana Press; 1 edition, ISBN-13: 978-1588299970, (2009).
Principles and Practices of Plant Genomics, Volume 3: Advanced Genomics, Chittaranjan Kole,
Albert G. Abbott, Science Publishers; 1 edition, ISBN-13: 978-1578086832, (2010).
Plant Stress Biology: From Genomics to Systems Biology, Heribert Hirt, Wiley-VCH, ISBN-13:
978-3527322909, (2009).
Genetics and Genomics of Soybean (Plant Genetics and Genomics: Crops and Models), Gary
Stacey, B. Goldberg, Springer; 1 edition, ISBN-13: 978-0387722986, (2008).
Plant Pathogenic Bacteria: Genomics and Molecular Biology, Robert W. Jackson, Caister
Academic Press; illustrated edition edition, ISBN-13: 978-1904455370, (2009).
Metabolomics and Metabolic Engineering
Sub. Code: BIM-402 (T)
Course Objectives: To enable the students to gain knowledge about metabolomics and the
metabolic engineering in post genomic era.
Text Book
Oncogenomics: Molecular Approaches to Cancer, Charles Brenner and David Duggan, ISBN:
978-0-471-22592-8, John Wiley & Sons India Pte. Ltd.
Biomarkers, Virendra Gomase and Shruti Gomase, VDM Verlag Dr. Müller, Germany,
ISBN:978-3639170306, (2010).
Transcriptomics: Expression Pattern Analysis, Virendra Gomase and Somnath Tagore, VDM
Verlag Dr. Müller, Germany, ISBN:978-3639214864, (2009).
Toxicogenomics, Virendra Gomase and Shruti Gomase, VDM Verlag Dr. Müller, Germany,
ISBN:978-3639249958, (2010).
Molecular Genetics Of Cancer, C.B. Powar, ISBN-81-7866-680-4, Himalaya Publication House
Structure and Function in Cell Signalling, John Nelson, ISBN: 978-0-470-02551-2, John Wiley
& Sons India Pte. Ltd.
Cell Signalling, C.B. Powar, ISBN-81-8318-365-4, Himalaya Publication House
Cell Signalling, John Hancock, ISBN : 0199264678, I.K. International Publishing House Pvt. Ltd
The Biochemistry of Cell Signaling, Ernst J.M. Helmreich, ISBN:9780195673845, Oxford
University Press
Molecular And Cellular Physiology Of Neurons, Fain Gordon L., ISBN :81-203-2734-9,
Prentice-Hall of India
Cancer Bioinformatics: From Therapy Design to Treatment, Sylvia Nagl, ISBN: 978-0-470-
86304-6, John Wiley & Sons India Pte. Ltd.
Lung Cancer, Sujal Desai, ISBN: 9780521872027, Cambridge University Press India Private
Limited
IPR and Industrial Psychology
Sub. Code: BIM-404 (T)
Course Objectives: To enable the students to gain knowledge about IPR and Industrial Psychology.
Text Book
High Performance Leadership, Dr. G. Vijayaragavan, ISBN-978-81-8318-901-9, Himalaya
Publication House
Intellectual Property Law for Engineers and Scientists, Howard B. Rockman, ISBN: 978-0-471-
44998-0, John Wiley & Sons India Pte. Ltd.
Organisational Psychology, Steve M. Jex, ISBN:9812532307, John Wiley & Sons India Pte. Ltd.
Industrial and Organizational Psychology: Linking Theory with Practice, Cary L. Cooper, ISBN:
978-0-631-20992-8, John Wiley & Sons India Pte. Ltd.
Business Ethics, C.S.V. Murthy, ISBN-81-8318-148-1, Himalaya Publication House
Business Law For Management, P. Saravanavel & S. Sumathi, ISBN-81-8318-069-8, Himalaya
Publication House
Managing Intellectual Property, Vinod V. Sople, ISBN :81-203-3061-7, Prentice-Hall of India
Psychology, Baron Robert A., ISBN :978-81-203-2335-3, Prentice-Hall of India
Organizational Behavior 1: Essential Theories Of Motivation And Leadership, Miner John B.,
ISBN :81-203-2951-1, Prentice-Hall of India
Project
Sub. Code: BIM-405 (T)
Course Objectives: Project carried out for the partial fulfillment of the M.Sc.Bioinformatics.
Total Credits: 8
Area for the projects
Sequence Analysis
Evolution and Phylogeny
Genomic
Proteomics
Metabolomics: NMR base genetic diversity
Immunogenomics: recent discoveries
Machine intelligence
Phosphoproteomics
Immunoinformatics and its role in microbes and vaccines
Cellunomics: the interaction analysis of cells
Phylogenomics: evolution and genomics intersection
microRNA: human disease and development
Interactomics: Chemical interaction analysis
Pathogenomics
RNomics: functional RNA analysis
Immunoproteomics
Phospho-onco-proteomics
Nutrigenomics
Fluxomics
Glycomics
Lipidomics
Vaccinomics
Transgenomics
Oncogenomics
Pharmacogenomics
Proteomics: Technologies for Protein Analysis
Microarray: An Approach for Current Drug Targets
Epigenomics
Transcriptomics
Toxicogenomics
Kinomics
Physiomics
Cytomics
Metabolomics
Metabolic Pathways
Networks and Systems Biology
Structural Bio-informatics
Neuro-informatics Bio-Ontologies
Biomedical Text Mining
Biological Data Modeling and Integration
LIMS, SIMS and Other Tools to Support Experimental Biology
Applications of Bio-informatics to Biomedicine
Agriculture and Drug Discovery
Information Technology
Computer application in Bioinformatics, Pharmacoinformatics
Databases and Software tools for analysis
Life Sciences Application
Drug Design and Discovery
Computational Neurosciences
Medical Informatics
New Trends in Computer Technology
Plant Genomics
Sub. Code: BIM-401 (P)
Course Objectives: To enable the students to gain knowledge about Plant Genomics
Total Credits: 2
List of Experiments:
Plant Genome organization and evolution
Plant Functional genomics
Plant Transgenomics approach
Plant Metabolomics
Plant Comparative genomics
Molecular modeling & Docking
Plant Micro array data analysis
Plant Primer design
Phylogenetic analysis
Molecular Evolution
Metabolic pathways analysis
Secondary metabolites and new drug approach
Text Books:
Plant Biotechnology: Green Revolution, Virendra Gomase and Anant Sherkhane, VDM Verlag
Dr. Müller, Germany, ISBN:978-3-639-03208-6, (2010).
Encyclopedia of Agricultural Sciences (5 Vol. Set), Virendra Gomase, Shruti Gomase, Serial
Publication, India, ISBN:978-8-183-87339-0, (2010).
Toxicogenomics, Virendra Gomase and Shruti Gomase, VDM Verlag Dr. Müller, Germany,
ISBN:978-3639249958, (2010).
Plant Genomics: Methods and Protocols (Methods in Molecular Biology), Daryl J. Somers, Peter
Langridge, J.P. Gustafson, Humana Press; 1 edition, ISBN-13: 978-1588299970, (2009).
Principles and Practices of Plant Genomics, Volume 3: Advanced Genomics, Chittaranjan Kole,
Albert G. Abbott, Science Publishers; 1 edition, ISBN-13: 978-1578086832, (2010).
Plant Stress Biology: From Genomics to Systems Biology, Heribert Hirt, Wiley-VCH, ISBN-13:
978-3527322909, (2009).
Genetics and Genomics of Soybean (Plant Genetics and Genomics: Crops and Models), Gary
Stacey, B. Goldberg, Springer; 1 edition, ISBN-13: 978-0387722986, (2008).
Plant Pathogenic Bacteria: Genomics and Molecular Biology, Robert W. Jackson, Caister
Academic Press; illustrated edition edition, ISBN-13: 978-1904455370, (2009).
Metabolomics and Metabolic Engineering
Sub. Code: BIM-402 (P)
Course Objectives: To enable the students to gain knowledge about Metabolomics and
Metabolic Engineering
Total Credits: 2
List of Experiments:
Metabolic engineering
Comprehensive models cellular reactions
Metabolic flux analysis and its applications
Metabolome and its study
Applications of metabolomics
Molecular Evolution
Metabolic pathways analysis
Secondary metabolites and new drug approach
System Biology approach
Network Engineering
Metabolic pathway and disease interaction
Supervised and unsupervised approach
Machine learning techniques
Cluster analysis for pathways
Textbooks:
Metabolomics, Virendra Gomase and Shruti Gomase, VDM Verlag Dr. Müller, Germany,
ISBN:978-3-639-24991-0, (2010).
Metabolomics- The Frontier of Systems Biology, M. Tomita, T. Nishioka, Springer Publications,
(2003).
Metabolic Engineering- Principles and Methodologies, Gregory N. Stephanopoulos, Academic
press, First Edition, (1998).
An Introduction to Metabolic and Cellular Engineering, S. Cortassa, World scientific public
company Ltd., (2002).
Metabolomics: Methods And Protocols, Wolfram Weckwerth, Humana Press, (2007).