SRM UNIVERSITY, DEPARTMENT OF BIOTECHNOLOGY SCHOOL OF BIOENGINEERING ST BT308 BIOINFORMATICS- 1 CYCLE TEST MAX MARK=50 MARKS TIME = 2 PERIODS

PART-A 5 X 4 =20 Marks

SRM UNIVERSITY, DEPARTMENT OF BIOTECHNOLOGY SCHOOL OF BIOENGINEERING ST BT308 BIOINFORMATICS- 1 CYCLE TEST MAX MARK=50 MARKS TIME = 2 PERIODS PART-A 5 X 4 =20 Marks

1. Write a note on ISO standard that describes rules and structures for representing, encoding, transmitting, and decoding data in telecommunications and computer networking. 2. Write the steps to download the README file from the blast/db/ directory of NCBI using FTP. 3. Which of the following regular expressions would be matched by sequence NWILKYG? Explain.
i. ii. iii. iv. N-M-x-[ILV]-x{2}-G [DN]-W-x-[ILV]-[RKH]-x-G [MN]-W-x{2}-[ILV]-G N-W-I-[ILMV]-x-K-[GA]

1. Write a note on ISO standard that describes rules and structures for representing, encoding, transmitting, and decoding data in telecommunications and computer networking. 2. Write the steps to download the README file from the blast/db/ directory of NCBI using FTP. 3. Which of the following regular expressions would be matched by sequence NWILKYG? Explain.
i. ii. iii. iv. N-M-x-[ILV]-x{2}-G [DN]-W-x-[ILV]-[RKH]-x-G [MN]-W-x{2}-[ILV]-G N-W-I-[ILMV]-x-K-[GA]

4. Write about the database, which is the Compendium of protein motif fingerprints. 5. Why there are two types of sequence identification numbers (GI and Accession number), and what is the difference between them?
PART-B 2 X 15 =30 Marks

4. Write about the database, which is the Compendium of protein motif fingerprints. 5. Why there are two types of sequence identification numbers (GI and Accession number), and what is the difference between them?
PART-B 2 X 15 =30 Marks

6. a) Explain in detail about the data model introduced by NCBI for sequence-related information. OR b) Write a short note on i. Protocols used in internet and explain the role of TCP/IP in the computer network. (7) ii. Electronic mail (8) 7. a) Mention a highly annotated protein sequence database and describe its features. OR b) Discuss about the databases that has reports of analyses of the sequences in the SWISSPROT.

6. a) Explain in detail about the data model introduced by NCBI for sequence-related information. OR b) Write a short note on i. Protocols used in internet and explain the role of TCP/IP in the computer network. (7) ii. Electronic mail (8) 7. a) Mention a highly annotated protein sequence database and describe its features. OR b) Discuss about the databases that has reports of analyses of the sequences in the SWISSPROT.