Professional Documents
Culture Documents
Acknowledgement
I wish to offer my best regards and profound gratitude to my supervisor Mazharul Islam
Chowdhury, Senior Lecturer, Department of Pharmacy, ASA University Bangladesh for his
expert guidance, keen interest, encouragement and effort to prepare this project paper. His
precious advice inspired me during the entire time of project work.
I also want to offer my sincere respect to my teacher Prof. Dr. Kohinur Begum, Dean, Faculty of
Science and Eng. Department of Pharmacy, ASA University Bangladesh for her sincere advice
and inspiration for this work and helpful co-operation whatever I needed.
I am thankful to the laboratory assistants and other staffs of the Pharmacy Department for their
co-operation during my work. Iam also grateful to my friends who encourage and assist me
through the work.
Finally, I would like to thank my family members for their co-operation.
Abstract
The appearance of adverse effects in association with angiotensin-converting
enzyme (ACE) inhibitors is thought to be related to angiotensin receptor.
Several polymorphisms of the human angiotensin receptor gene may be
involved in ACE inhibitorrelated cough. To investigate this possibility, we
identified the A/C polymorphism in subjects with ACE inhibitorrelated
cough. We classified the study population into 2 groups: subjects with and
without cough that were treated with ACE inhibitor. The A/C was genotyped
by the polymerase chain reaction single-strand conformation polymorphism
method. In the presence of the A allele, miR-155 is able to bind to the AT1R mRNA and
suppress AT1R expression. In contrast, the C allele interrupts the base pairing complementarity
of miR-155 with the AT1R mRNA sequence, and miR-155 is considerably less effective at
suppressing AT1R expression . Thus, altered regulation by miR-155 is one mechanism by which
the AT1-1166 CC polymorphism can lead to increased expression of the AT1R . As the AT1
receptor is involved in the direct effects of angiotensin II, it can be hypothesised that genetic
variants in the AT1 receptor will influence the response to an ACE inhibitor.
CHAPTER 1
INRTODUCTION
1.INTRODUCTION:
1.1.Background
The World Health Organization describes hypertension as the number one risk factor for
mortality, as worldwide annually 7.5 million deaths (13% of all deaths) are attributable to high
blood pressure (BP)-related diseases, particularly cardiovascular diseases (CVD)(1). For that
reason, the guidelines of hypertension and cardiology societies emphasize that hypertension
treatment should aim at reducing the long-term risk of (cardiovascular) morbidity and
mortality(2). Hypertension is often referred to as the silent killer, as its presence is usually
symptomless. Therefore, compliance to antihypertensive medication is a challenge for most
patients, especially as adequate BP control often requires the use of multiple agents, causing
additional side effects and as a result inferior adherence(2). Thus, there is a continuing need for
potent medications, preferably with beneficial effects on mortality, to improve patients Between
1970 and 1973, Squibb scientists randomly tested about 2,000 chemical structures for ACE
inhibitor activity but could not find what they wanted. Their luck changed on Wednesday, 13
March 1974, when they decided to follow up some newly published research on an inhibitor of
carboxypeptidase A an exopeptidase thought to have a similar active site to ACE. Then, 60
compounds and 18 months later, they had captopril, and early clinical studies confirmed its
antihypertensive effects(3).adherence to the treatment prescribed.
In the early 1980s, hypertension conferences were routinely enlivened by the poisonous
Brazilian viper, Bothrops jararaca. With its striking zig-zag markings and aggressively
protruding tongue, images of the snake were a welcome break from graphs and tables in
presentations about captopril the first of the angiotensin-converting enzyme (ACE) inhibitors,
whose effects on blood pressure mechanisms mimicked those of the snakes venom. When the
cardiovascular juggernaut alighted in Sao Paulo, Brazil, for a major congress in 1984, there was
even an opportunity for delegates to visit a snake farm and see the beast in all its glory.
The discovery of the ACE inhibitors and the creation of captopril was one of the really
great advances in cardiovascular medicine, alongside beta blockers, calcium channel blockers
and statins. When captopril arrived, there was a lot of excitement and a feeling that acting on the
renin-angiotensin system was going to be a very important step forward.
ACE was identified as the enzyme responsible for the conversion of angiotensin I to the
vasoconstrictor substance, angiotensin II, in the mid 1950s(4). In 1968, studies carried out in the
Royal College of Surgeons laboratories of Nobel prize winner, John Vane, showed that peptides
from the Brazilian vipers venom inhibited the activity of ACE from dog lung(5).
When Vane proposed an ACE inhibitor research programme to US pharmaceutical
company, ER Squibb and Sons (now part of Bristol Myers Squibb), clinical advisers were wary
because, at that time, the renin-angiotensin system was thought to play a role only in the most
serious malignant hypertension(6,7). However, it was decided that there was enough clinical
interest to proceed with trying to develop synthetic ACE inhibitors that were orally active(6,7).
Between 1970 and 1973, Squibb scientists randomly tested about 2,000 chemical
structures for ACE inhibitor activity but could not find what they wanted. Their luck changed on
Wednesday, 13 March 1974, when they decided to follow up some newly published research on
an inhibitor of carboxypeptidase A an exopeptidase thought to have a similar active site to
ACE(7). Then, 60 compounds and 18 months later, they had captopril, and early clinical studies
confirmed its antihypertensive effects(8).
The outlook for ACE inhibitors changed dramatically in 1987 with the
publication of the Co-operative North Scandinavian Enalapril Survival Study
(CONSENSUS)(9). This showed a 31 per cent reduction in mortality at one
year in patients with severe heart failure who were treated with enalapril.
Dropping the dose of enalapril as low as 2.5mg daily in high risk patients
reduced the problem of hypotension to acceptable levels.
angiotensinaldosterone system (RAAS) inhibitors.(2) Blockade of the RAAS is one of the key
therapeutic targets in patients with hypertension, as an overactive RAAS is strongly associated
with high BP. The RAAS controls circulating volume and electrolyte balance in the human body
and is therefore an important regulator of haemodynamic stability(11). RAAS inhibitors are the
most widely prescribed class of drugs for the management of hypertension. Currently, the most
clinically relevant pharmacological agents that block the RAAS are angiotensin-converting
enzyme (ACE) inhibitors .
Angiotensin-converting enzyme inhibitors are widely used for the treatment of
hypertension and are presently the uncontested drugs of choice for the treatment of congestive
heart failure(12)Angiotensin converting enzyme inhibitors not only have become the cornerstone
of the treatment of heart failure ,but also play a major role in hypertension and in cardiovascular
protection.
that occurs when renin release is blocked by angiotensin IIinduced negative feedback. A second
beneficial effect of ACE inhibitors, and a main difference between them and angiotensin receptor
antagonists, is the increase in bradykinin levels caused by the decrease in transformation of
bradykinin into inactive peptides(14)(15).The increase in bradykinin levels induced by ACE
inhibitors leads to the release of nitric oxide and prostaglandins with vasodilating effects on
vessel walls(15)(16).
The efficacy of ACE-inhibitors to improve outcome has been demonstrated by several
large clinical trials in patients with cardiovascular disease. These include post-myocardial
infarction (MI) patients, patients with asymptomatic left ventricular systolic dysfunction, heart
failure or a history of cerebrovascular disease, and stable CAD patients with preserved left
ventricular function (17-23).
ACE inhibitors favorably alter hemodynamics in patients with systolic dysfunction. ACE
inhibitors reduce afterload, preload, and systolic wall stress,such that cardiac output increases
without an increase in heart rate; ACE inhibitors promote salt excretion by augmenting renal
blood flow and by reducing the production of aldosterone and antidiuretic hormone. Since 1987,
several large, prospective, randomized, placebo-controlled trials have demonstrated that
treatment with ACE inhibitors results in a reduction in overall mortality in patients with
congestive heart failure due to systolic dysfunction(35). The reduction in mortality has been seen
even in patients with asymptomatic left ventricular dysfunction. This reduction in mortality
results primarily from a reduction in progression of congestive heart failure, although the
incidence of sudden death and MI may also decrease(35).
10
This possibility was explored in the Heart Outcome Prevention Evaluation (HOPE)Study,
in which 3,577 individuals with diabetes received either placebo or ramipril(up to 10 mg daily)
and were followed for 4.5 years . Ramipril reduced the risk of the composite outcome of
myocardial infarction, stroke, or cardiovascular death by 25% and that of overt nephropathy by
24%. This benefit occurred with a very modest decrease in blood pressure and was shown to be
independent of the change in blood pressure. Only 56% of the individuals with diabetes in the
study had a diagnosis of hypertension at randomization. Of these patients, 28% were taking Bblockers,20% were taking diuretics and 44% were taking calcium channel blockers at
randomization in addition to either an ACE inhibitor or placebo. Thus, the HOPE Study suggests
that ACE inhibitors may have a cardioprotective effect over and above any antihypertensive
effect(36).
11
The study also suggested favorable metabolic effects. Levels of glycated hemoglobin
were lower in participants on ramipril than in participants on placebo during the first 2 years of
the study. It is important to note that the HOPE Study did not compare ramipril with another
active agent and that the study was clearly not designed as a trial to control blood pressure or to
be relevant to people with hypertension only(36).
Other large studies have carefully compared the benefits of an ACE inhibitor with those
of other antihypertensive drugs in people with diabetes and hypertension.These studies were
carefully sought and analyzed in a systematic overview by Pahor et al. in this issue of Diabetes
Care. All randomized controlled trials that included hypertensive patients with type 2 diabetes
and compared an ACE inhibitor with another active therapy for the treatment of hypertension
were included in the overview if they reported a follow-up dura-tion of 2 years and assessed the
development of cardiovascular events(36).
Four clinical trials were identified that studied a combined total of 2,180 individuals for a
follow-up of 13,300 person-years. ACE inhibitors were compared with calcium channel
blockers,B -blockers, or diuretics in these studies. Comparable blood pressure reduction was
achieved in both arms.All of the studies, except for the hypertension component of the U.K.
Prospective Diabetes Study (UKPDS), had consistent findings and, when meta-analyzed,
demonstrated an overall relative-risk reduction of 51% (95% CI 3364) for cardiovascular events
and 43% for all-cause mortality. The UKPDS was not combined because it was statistically
heterogeneous in comparison with the other 3 studies. Although the authors provide several
explanations for this heterogeneity, the reason remains unclear and is likely to not be resolved
until further trials are published(36).
Studies in patients with left ventricular dysfunction have suggested the possibility that
ACE inhibitors decrease the frequency of ischemic events. For example, in the SAVE and
SOLVD trials, ACE inhibitors reduced the incidence of recurrent MI and angina in patients with
left ventricular dysfunction or mild congestive heart failure by >20%(37)(38). Nevertheless, it is
12
not known whether ACE inhibitors will prevent ischemic events in patients with normal
ventricular function.
However, there is experimental evidence that ACE inhibition can retard the development
of atherosclerosis. In animal models of atherosclerosis, including apolipoprotein E knockout
mice(39), Watanabe rabbits(40), and cholesterol-fed monkeys,(41) ACE inhibitors have been
shown to reduce the extent of vascular lesions. Furthermore, ACE inhibition has been shown to
reverse endothelial dysfunction in normotensive patients with CAD, in hypertensive patients, and
in patients with noninsulin-dependent diabetes mellitus(42) .ACE inhibition is thought to
improve endothelial function by attenuating the vasoconstrictive and superoxide radical
generating effects of Ang II while simultaneously enhancing the bradykinin-dependent induction
of endothelial nitric oxide production.
These medicines are used alone for high blood pressure, or they are used with other
medicines such as a diuretic. ACE inhibitors are a good choice for people who have had a heart
attack, because the medicine helps reduce the workload on the heart. Also a good choice for
people who have diabetes, because this medicine does not affect blood sugar levels and may help
protect the kidneys. ACE inhibitors may also help to prevent a heart attack or stroke.
14
ACE inhibitors can cause a reversible decline in renal function in the setting of
decreased renal perfusion, whether this is due to bilateral renal artery stenosis(58),severe
congestive heart failure(59), or volume depletion(60). When perfusion pressure or afferent
arteriolar pressure is decreased in the glomerulus, glomerular filtration is maintained by efferent
arteriolar vasoconstriction, . The mechanism is not known but may involve increased levels of
bradykinin or substance P and stimulation of vagal C fibers(61).
Dry ,irritant cough is a common adverse effect of ace inhibitor. The frequency of cough
varies among different patient populations; the rate appears to be 10% in white populations but
may be as high as 44% in Asian populations(62). Cough is more frequent among women than
men(63) (64). The cough tends to be a dry, mildly annoying cough, but it often requires cessation
of therapy.
The rate of angioedema has been reported to be 1 to 2 per 1000 in primarily white
populations, but appears to be increased in blacks.160 Although the rate of angioedema is highest
within the first month of ACE inhibitor use, angioedema may occur years after the initiation of
therapy(68). Therefore, patients should be advised to recognize early warning signs of localized
edema and to discontinue the drug should they occur.
If administered in the second or third trimester of pregnancy, ACE inhibitors can cause a
number of fetal anomalies, including oligohydramnios, fetal calvarial hypoplasia, fetal
15
pulmonary hypoplasia, fetal growth retardation, fetal death, neonatal anuria, and neonatal
death(69) (70). For this reason, ACE inhibitors should be used with caution in women of childbearing potential and must be stopped immediately in any woman in whom pregnancy has been
diagnosed.
Adverse effects that appear to be related to the presence of a sulfhydryl group are
neutropenia, nephrotic syndrome, and skin rash(71). Neutropenia occurs in <0.05% of
patients(72). The incidence is higher in patients who have renal insufficiency or collagen
vascular disease(73) (74). Skin rash occurs in 1% of patients(75) and usually consists of a
pruritic maculopapular eruption; rarely, exfoliativedermatitis has been reported. The rash appears
to be dose related.
16
Genetic polymorphisms for many drug-metabolizing enzymes and drug targets (e.g.,
receptors) have been identified. Although currently limited to a few pathways, pharmacogenetic
testing may enable physicians to understand why patients react differently to various drugs and
to make better decisions about therapy. Ultimately, this understanding may shift the medical
paradigm to highly individualized therapeutic regimens(76).
Several factors may be expected to play a dominant role in determining the response of a
patient to therapy. In particular, in the case of ACE inhibition, genetic factors within the RAS
pathway are likely to affect its pharmacodynamics and clinical efficacy. Genetic factors causing
differences in drug absorption and metabolic clearance are also relevant.However, until now
there are no strong leads to explore this pharmaco-genetically since there are no metabolic (CYP)
genes linked specifically to ACE-inhibitors, although this might also be a relevant pathway to
investigate in future research(77).
17
RAAS system and related systems may influence atherosclerosis (underlying disease process)
and inherent differences in the susceptibility to therapeutic agents such as ACE inhibitors(78).
Angiotensin II (AGT II) is the central component of the RAS pathway, one of the most
important physiological pathways affecting the cardiovascular system and fluid and electrolyte
balance is the renin angiotensin system (RAS) which, in parallel with kinins, has diverse
regulatory roles in vasoconstriction, cell proliferation, and secretion of aldosterone from the
adrenal gland(79,80) .
It acts through two main receptors: the angiotensin II type I receptor (AGTR1 or AT1R) and the
angiotensin II type II receptor (AGTR2). It is generally believed that AGTR1 is the dominant
receptor in the cardiovascular system(7981).AGTR1 is located on 3q2325(82) and spans about
60 kb including five exons and four introns. Exon sizes range from 59 to 2014 bp. Exon 5 is the
largest and the only coding exon, while the first four exons encode a 5 untranslated region
(UTR)(8385).AGTR1 is expressed in different organs including the heart, skeletal muscle,
brain, human liver, lung, and adrenal gland. This receptor is included in the guanyl nucleotide
binding protein (G-protein) coupled receptor superfamily for which the intracellular messengers
are phospholipase, calcium, and protein kinase(86,87) .
Many polymorphisms in genes of the RAS pathway have been identified. In AGTR1
(GenBank accession no. AF245699), A1166C (single nucleotide polymorphism (SNP) ID:
rs5186) represented in the 3 UTR of the mRNA has been widely studied. It has been associated
with phenotypic effects including essential hypertension,(88-90) systolic blood pressure,(91)
myocardial infarction, left ventricular hypertrophy,(97) coronary artery disease (CAD),(92,93)
pre-eclampsia,(94) pulse wave velocity in Caucasian subjects,(95-97) and also stroke in Japanese
subjects(98).
Single nucleotide polymorphisms, frequently called SNPs (pronounced snips), are the
most common type of genetic variation among people. Each SNP represents a difference in a
single DNA building block, called a nucleotide. For example, a SNP may replace the nucleotide
18
cytosine (C) with the nucleotide thymine (T) in a certain stretch of DNA. SNPs occur normally
throughout a persons DNA. They occur once in every 300 nucleotides on average, which means
there are roughly 10 million SNPs in the human genome. Most commonly, these variations are
found in the DNA between genes. They can act as biological markers, helping scientists locate
genes that are associated with disease. When SNPs occur within a gene or in a regulatory region
near a gene, they may play a more direct role in affecting the genes function,as a result disease
can occureor the body shows some adverse effects to the drugs.
proximal tubules, and other tissues. In addition, angiotensin II may play a more direct role in
kidney development, perhaps by affecting growth factors involved in the development of kidney
structures(102).
The agtr1 gene belongs to a family of genes called GPCR .variation in the agtr1 gene have
been reported to be associated with anincreased risk of aform of high biood pressure called
essential hypertension; heart disease;ordiabeticnephropathy,a complication of diabetes that
affects kidney function (102).
rs5186, a SNP known as +1166A/C or A1166C, is located in the 3' untranslated region of the
angiotensin II receptor type 1 gene AGTR1, which is also known as AT2R1 or AT1R. It is among
the most studied of over 50 SNPs in AGTR1(103).
In previous studies, several genetic polymorphisms in RAAS genes have been associated
with high blood pressure levels or an increased cardiovascular risk (104,105). Nearly all these
studies focused at two polymorphisms, the ACE I/D polymorphism and the M235T
polymorphism in the angiotensinogen gene.
Because of limited power, due to limited study sample size, results have been inconsistent
and the underlying questions not answered adequately. With regard to interaction between
genetic factors and treatment response, the results are scarce. No prior studies have been
performed yet with ACE-inhibitors at a large scale neither in a randomized setting nor in stable
CAD (one of the major indications of ACE-inhibitors).
Another important limitation of prior research in cardiovascular pharmacogenetics is the
investigation of one or two polymorphisms within only one gene, thereby ignoring the welldocumented feedback mechanisms within the RAAS and the fact that there are two angiotensin
II receptors (AT1 and AT2), which have counteracting effects also in humans. We suggest that a
more comprehensive coverage of genetic variation in multiple RAAS genes is needed, by using a
correct haplotype approach. This is achieved by using the latest information on genetic variation
and linkage disequilibrium patterns in the selection of haplotype-tagging SNPs.
New approaches to guiding ACE inhibitor therapy We used more patient-specific
characteristics such as patients genetic information (DNA). Pharmacogenetics is aimed to
20
understand why some drugs work better for some people than others and why some people are
more likely to experience side effects. If genetic factors are indeed related to drug response,
pharmacogenetic profiling might be a new way to reach significant advances in individualised
cardiovascular medicine. Currently, pharmacogenetic research of ACE inhibitors is rare. In
general, it is expected that the response of a patient to therapy can be influenced by several types
of genetic factors.
considerably less effective at suppressing AT1R expression (113, 114, 115). Thus, altered
regulation by miR-155 is one mechanism by which the AT1-1166 CC polymorphism can lead to
increased expression of the AT1R and cardiovascular disease. ]. Functionality of this SNP is at
this moment unknown, but more basic research has been started based on these findings. As the
AT1 receptor is involved in the direct effects of angiotensin II, it can be hypothesised that genetic
variants in the AT1 receptor will influence the response to an ACE inhibitor(106).
The goal of the present analysis is to assess the effect of singlenucieotide polymorphism
in AGTR 1 gene( at rs number ) and its effect on ace inhibitor induced adverse effects in
Bangladeshi population. In this case-control study, we examined single nucleotide
polymorphism of AGTR1 genes and ACEI induced adverse effects in the Bangladeshi
population age between 30 and 70 years.
We advocate that future large-scale randomised clinical trials should also integrate a
pharmacogenetic analysis in their trial design to prospectively test treatment efficacy in a similar
way. Pharmacogenetic analyses of clinical trials truly open up a perspective to individualise
preventive therapy in patients with cardiovascular disease. Physicians will be able to predict the
response to treatment (responders and non-responders) in advance, before starting prescription.
Individualised therapy by pharmacogenetic profiling will avoid unnecessary treatment of nonresponding patients and considerably reduce healthcare costs.
22
CHAPTER 2
METHODES AND MATERIALS
23
We classified the study population into 2 groups. These 2 groups included a combined
total of _ patients, with and without cough (cough + and cough -, respectively), who had been
given ACE inhibitors for the treatment of essential hypertension. They were all essential
hypertensive subjects free of complications such as ischemic heart disease, hyperlipidemia, and
24
diabetes mellitus. None had any history of recent respiratory infection, other respiratory diseases,
or pulmonary congestion. In the cough +patients , previous therapy with ACE inhibitors had to
be withdrawn because of the development of a cough within 2 weeks after starting therapy.
These patients had complained of dry cough, and all of their symptoms disappeared soon after
withdrawal of the ACE inhibitors. The cough-patients , age- and gender-matched to the
cough+patients, had no complaints of cough and other unwanted effects and continued the ACE
inhibitor regimen for the treatment of essential hypertension.
Blood pressure was measured with each subject in the sitting position after 15 minutes of
rest. Blood samples were obtained after a fast of at least 12 hours. Written informed consent is a
form regarding the approval of the patients was obtained from each subject for participation in
the study.
2.2. Materials
Instruments
Sources
Germany
USA
USA
Germany
UV Spectrophotometer
Shimadzu, USA
PH Meter
Italy
China
Micropipette
USA
Freeze ( 800 C)
Sweden
25
Microcentrifuge Machine
Germany
Freeze ( 200 C)
USA
UK
Autoclave Machine
Korea
Incubator
UK
Sources
German
Conical Flasks
Germany
Pipettes (Precicolor)
Germany
Germany
Pipette Tips
USA
USA
China
China
26
2.4.1 Agarose
Gel Strength
Type
HS
0.5-30
2000 (1.5%)
1-200
2800 (1.5%)
0.01-1.0
1000 (3.0%)
1600
0.01-1.0
1400 (1.5%)
Reagents
Sources
Triton-X 100
USA
USA
Ethanol
USA
Chloroform
USA
Sodium Perchlorate
USA
27
USA
USA
Sucrose
USA
Magnesium Chloride
USA
Tris-HCl
USA
EDTA-Na2
USA
USA
Ethidium Bromide
UK
US
A
MgCl2 Solution
US
A
US
A
US
A
US
A
Name
TAE Buffer (10x)
TBE Buffer(10x)
2.6. Solutions
TE Buffer(1x)
29
5. Then the tube was mixed in a rotary mixture at room temperature for about 15 min so that
pellet was dissolved completely.
6. Then the sample tube was incubated at 65C for 30 min.
7. Then 2.5 ml of chilled Chloroform was added to it.
8. Then it was mixed in a rotary mixture for 10 min at room temperature.
9. Then the tube was centrifuged at 1500 rpm for 5 min. (37C).
10. The DNA containing phase (uppermost phase) was transferred to a fresh autoclaved 15 ml
polypropylene tube using a disposable Pasteur pipette.
11. Two volumes of Ethanol (double that of DNA phase) was added to it.
12. It was then mixed immediately by slow gentle inversion until all cloudiness was disappeared.
13. DNA was seen to come out of the solution as a white cotton-wool pellet.
14. The white cotton-wool pellet was collected with a disposable microbiology loop.
15. The loop was air dried.
16. The DNA was dissolved in 5 mM Tris-HCl Buffer contained in a 1.5 ml screw cap tube.
31
The purity and integrity of isolated genomic DNA were also assessed by means of agarose gel
electrophoresis. A sample volume of 5 l (50-70 ng/l) was resolved on a 2% (w/v) agarose gel.
2.11. Genotyping of Single Nucleotide Polymorphism (SNPS) of genes
32
In order to facilitate the accurate genotyping of the volunteers DNA samples for the selected
SNPs, PCR-RFLP was employed due to its affordability, efficiency, ease of use and reliability.
This method of genotyping produces the restriction enzyme (REase) digestion of polymerase
chain reaction (PCR) amplification product. The subsequent digestion or lack of digestion, of
PCR amplification product due to the presence or absence of an SNP within the REase
recognition site allows for accurate and reliable genotyping and the consequent determination of
SNP frequencies within a sample cohort. The classification of an SNP genotype as wild-type or
variant was done according to accepted nomenclature and the relevant reference sequences
available from the National
Centre
for
Entrez
This primer-directed PCR method facilitates the in vitro amplification of single-copy genomic
DNA sequences by a factor of more than ten million with extremely high sequence specificity.
2.11.2 Primer Design
There are some guidelines for primer design:
i.
ii.
iii.
iv.
v.
33
vi.
Differences in melting temperatures (Tm) of the two primers should not exceed
5C.
By considering all the factors, the primers for the study were designed. The sequences of the
primers used and their sizes are presented in Table 2.4
Table 2.1: Name of the allele, sequence of the designed primer with their size and melting
point.
No
Allele
AGTR1
(rs5186)
FP
AGTR1
(rs5186)
Primer Sequence
M.T
Size
(C)
(Bp)
5-GGTTGAGGAGTTGGCTCTGC-3
5-ATGAACTCCTGGGGGACGGT-3
RP
FP=Forward Primer; RP=Reverse Primer; M.T=Melting Temperature
Primers are obtained from Jena Bioscience.
minutes at 94C, followed by 1 minute at 94C, 30 seconds at 58C, and 30 seconds at 72C for
30 cycles, with a final extension time of 5 minutes at 72C.
PCR conditions to synthesize various alleles with their respective lengths are given in Table-2.5.
Table 2.2: PCR conditions to synthesize various alleles and their respective lengths.
POLYMORPH
AGTR1
(rs5186)
PCR Conditions
(35 Cycles)
Size of PCR
Products
(bp)
35
281
conditions are listed in Table 2.6. Electrophoreses was done for the digested products using 2%
agarose gel.
Table 2.3: The restriction enzymes, digestion condition and length of the expected
fragments on digestion to diagnose genes:
SNP
AGTR1
Rs5168
RESTRICTION
DIGESTION
ENZYME
CONDITIONS
Incubation at 37C
HaeII
overnight
EXPECTED
FRAGMENTS
(bp)
NH: 281
HE: 104 ,177,281
MH: 177,104
was also used for size estimation of all REase digestion fragments, allowing for accurate and
reliable genotyping of samples. EZ Load 100 bp DNA ladder is thus evident in lane 1 of all
agarose gel photos. All agarose gels were visualised under ultraviolet (UV) light and photographed
with a Gel Documentation and Analysis System.
2.15. Gel Electrophoresis
Electrophoresis is a method of separating substances based on the rate of movement while under
the influence of an electric field. Agarose gel electrophoresis of DNA is used to determine the
presence and distinguish the type of nucleic acids obtained after extraction and to analyze
digestion products. Desired DNA fragments can be physically isolated for various purposes such
as sequencing, probe preparation, or for cloning fragments into other vectors. Both agarose and
polyacrylamide gels are used for DNA analysis. Agarose gels are usually run to size larger
fragments (greater than 200 bp) and polyacrylamide gels are run to size fragments less than 200
bp. Typically agarose gels are used for most purposes and polyacrylamide gels are used when
small fragments, such as digests of 16S rRNA genes, are being distinguished. Regular agarose
gels may range in concentration from 0.6 to 3.0%.
Agarose is a polysaccharide purified from seaweed. An agarose gel is created by suspending dry
agarose in a buffer solution, boiling until the solution becomes clear, and then pouring it into a
casting tray and allowing it to cool.
electrophoresis, the gel is submersed in a chamber containing a buffer solution and a positive and
negative electrode. The DNA to be analyzed is forced through the pores of the gel by the
electrical current.
Under an electrical field, DNA will move to the positive electrode (red) and away from the
negative electrode (black). Several factors influence how fast the DNA moves, including; the
strength of the electrical field, the concentration of agarose in the gel and most importantly, the
size of the DNA molecules. Smaller DNA molecules move through the agarose faster than larger
molecules. DNA in the gel will be visualized by the use of Ethidium Bromide, added to the gel.
Ethidium bromide binds to DNA and illuminates when exposed to ultraviolet light, causing the
DNA to glow.
37
All PCR products were resolved by electrophoresis in 2% (w/v) agarose gel at 80 volts
(V). The REase digestion fragments were also observed in 2% (w/v) agarose gel. All REase
digestion fragments were resolved at 80 V, so as to ensure sufficient resolution to allow for
accurate genotyping.
2.16. Agarose Gel Electrophoresis Procedure:
All
agarose
gels
were
made
with
and
resolved
in
1X
tris
acetate
ethylenediaminetetraacetic acid (TAE) buffer, which was made and stored as a 10X stock
solution and diluted to the required working concentration as was needed. In order to facilitate
the visualization of DNA within the agarose gel under UV light, 1 g of ethidium bromide (EtBr)
per ml agarose solution was added -i.e. 0.01% (v/v) EtBr stock solution (10 mg/ml)
Procedure:
A. Casting a gel
1. An appropriate volume of 1X Tris-acetate-EDTA (TAE) buffer with an appropriate amount of
agarose (these values are determined based on the gel dimensions and the desired percentage of
agarose) was mixed in a conical flask. The flask was swirled to evenly distribute the agarose.
2. The solution was then heated in the microwave oven for 1 minute. Protective gloves were
worn and the flask was removed from the microwave oven (before it boiled over), swirled, and
reheated while keeping constant watch to be sure it did not boil over. When it started to boil,
boiling was stopped and swirled again repeating the process until all of the agarose went into
solution.
3. The flask was allowed to cool. The gel was poured when the temperature of the solution was
55-65 C.
4. The gel apparatus was prepared for casting the gel while the agarose was cooling.
5. Prior to pouring the gel, Ethidium bromide was added to the dissolved agarose and swirled to
mix.
6. The gel was poured into the casting tray and the comb was adjusted to keep the wells
perpendicular. The gel was allowed to cool and was hardened (20-30 minutes) prior to use.
38
39
40
CHAPTER 3
RESULT AND DISCUSSION
41
Result
GAGCCATATTCTCAGAAGGGAGATCAAG
GACCACGCTTGTGATTTACTTCTGACTTCAGGAGCCACTTTCTGTCAGTGAA
ATTTCTCTTTTTGCTTCT
Insertion (A) type of
AGCACCGAGTGGATTTCCTTCAGCTGATGATTGACTCTCAGAATTCAAA
AGAAACTGAGTCCCACAAAGGTAACCAGAGTGTTTCTGAGGGCTACTT
GTGGGGCACTCAGAGGGAAGGCCTTGTTCTGAAAATGTGCAGGAAGTATTC
CAGGATGATGAGAATTTCTGCCACATAGCAGAACGACACATGTTTG
DARK RED---------------> PRIMER SEQUENCE
RED
GREEN
YELLOW
By using the appropriate pair of primers and other PCR reaction program
parameters the PCR product of AGTR1 was obtained. The PCR product size was
290 bp.
42
300 bp
200 bp
100 bp
290 bp
Figure 3.8: PCR product of AGTR1 (290bp) (Lane 3 to 8) (2% w/v agarose gel) (Lane-1
contains Molecular ruler; Lane-2 contains Control-No DNA).
Fragmentation Pattern:
The PCR product was digested with HinfI. The fragments were observed in
agarose gel (2%) as well as polyacrylamide gel (10%).
Table 3.10: Name of the restriction enzyme with its sites of digestion.
Restriction enzyme
Sites of digestion
HinfI
43
Table 3.11: Type of nucleotide changes, cutting sites and fragments of the allele in
case of normal homozygote, heterozygote, and mutant homozygote.
Changes
When there is no
Fragments
129,24,137
insertion
Type
Normal
Reference
Homozygote
(AC/AC)
When insertion of A
129,24,137
occurs
153,137
(AC/AAC)
When insertion of A
153,137
Heterozygote
Mutant
occurs
Homozygote
(AAC/AAC)
Observed Results:
Restriction enzyme digestion products were visualized in agarose (2%) as well as
polyacrylamide gel (10%). Very small fragment (24 bp) was not observed in the
gel.
Table 3.12: Name of the allele, PCR product size, restriction enzyme, length of
the expected and observed fragments on digestion.
Allele Name
PCR Product
AGTR1
Size (bp)
290
RE
HinfI
Expected Fragments
(bp)
NH 137, 129, 24
Observed
Fragments (bp)
137, 129, 24
For all the volunteers 137, 129, 24 bp fragments were obtained i.e. all the samples
are normal homozygote.
44
300 bp
200 bp
137
bp
100 bp
129
Figure 3.9: Restriction Endonuclease (HinfI) digestion fragment of AGTR1 (Lane 3 to 10) (10%
Polyacrylamide gel) (Lane-1 contains Molecular ruler; Lane-2 contains Control-PCR product).
Individual Results:
SERIAL
NO
Type of Allele
CODE
1
2
3
4
5
6
7
8
9
10
M3
M4
M5
M6
M7
M8
M9
M10
M11
M12
45
*
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
M13
M14
M16
M20
N4
N5
N6
N7
N9
N10
N11
N12
N13
N14
N15
N16
N17
N18
N19
N20
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH
NH=NORMAL HOMOZYGOTE
46
RE
PCR
Expected
Observed
Conclusion about
product
fragments
fragments
samples
size (bp)
(bp)
for all
samples
AGTR1
HinfI
290
NH 137, 129, 24
HE153, 137, 129,
137, 129,24
24
MH 153,137
RE=Restriction enzyme; NH: Normal Homozygote; HE: Heterozygote; MH: Mutant
Homozygote
Discussion
In recent years, the clinical use of ACE inhibitors has been increasingly applied for the
treatment of hypertension, congestive heart failure, and myocardial infarction. The mechanism of
the benefit for left ventricular systolic dysfunction has been thought to be largely due to the
prevention of left ventricular dilatation and remodeling. The drawback, however, is that ACE
inhibitors have been reported to cause dry cough as a side effect in 1% to 33% of the patients.
Dry cough is the most common and unexplained symptom, and although it can often be
annoying, it seldom is harmful. Persistent cough, usually more severe at night, forces a
significant number of patients to discontinue use of the drugs. The cough may improve with a
reduction in the dose but is usually not wholly dose dependent.After withdrawal, it abates within
1 days to 4 weeks. The symptom seems to be more prevalent in females than in males; in most
larger studies, two thirds of the affected patients are females. The symptom is also more common
in nonsmokers than in smokers.
47
Despite considerable scientific investigation on the cause and mechanism of the dry cough
induced by ACE inhibition, the specific mechanism of this adverse effect is not fully understood.
It may be related to the genetic polymorphism of agtr1 gene. The accumulation of kinins has
been suggested to play a major role in these adverse effects of ACE inhibitors. The appearance of
a cough has been attributed to a possible local accumulation of bradykinin. A local accumulation
of bradykinin may lead to activation of a proinflammatory peptide (eg, substance P and
neuropeptide Y) and a local release of histamine, and those, in turn, may additionally induce
cough reflex hypersensitivity. For these reasons, most research on putative mechanisms has
focused on the effects mediated by bradykinin.
Moreover, it has been speculated that the occurrence of adverse effects of ACE inhibitors is
genetically predetermined. The candidate genes implicated thus far include variants of the genes
encoding the ACE gene,to determine whether genetic variants in the agtr1 receptor gene could
affect receptor expression and function and induce ACE inhibitorrelated cough, we
retrospectively studied the genetic susceptibility to ACE inhibitorrelated cough in patients with
hypertension by examining agtr1 receptor gene promoter polymorphism.
In the present study, we retrospectively investigated the genetic susceptibility to ACE inhibitor
related cough by examining agtr1 receptor gene promoter polymorphism. As a result, we found
that a genetic variation of the gene may explain the occurrence of this adverse drug reaction. This
genetic variation might be an effective predictor of ACE inhibitorrelated cough in advance.
48
CHAPTER 4
CONCLUSSION
Conclussion:
In the present study we showed a significant correlation between B 2 9/+9 and low ACE
activity and the development of ACE-AE and ACE-cough. Furthermore,no significant
association was shown between ACE I/D or B2 C-58Tgene polymorphisms and ACE-AE
49
and ACE-cough. The difficulty in elucidating the genetic basis of complex diseases is
entrenched in multiple factors that have an effect in the development of a disease. Therefore,
further studies should be carried out to determine whether the combination of genetic
polymorphisms might be risk factors for the development of both ACE-AE and ACE-cough.
As is clear from the above overview, in the study of the role of genetic
variability in ACE inhibitor induced adverse effects.
The available evidence supports the view that the
C allele of AGTR1 Gene is a risk factor for progressive adverse effects of ACE
Inhibitor.
renal function loss in a spectrum of chro
nic renal disorders. The ACE I/D genotype
may also affect the therapeutic response to
ACE-inhibition in renal patients, but this
interaction may be different in Caucasia
n as compared to Japanese populations.
Thus, albeit of modest potency and not under
all circumstances, ACE genotype is the
first genetic risk factor for progressive
renal function loss. More detailed genetic
analysis in genetically homogeneous populations [124] could elucidate the genetic
basis of these renal effects. While large ep
idemiological studies can serve to define its
overall impact in the renal population, it
may be even more important to delineate
under which circumstances, by which mechanisms, and in which patients, ACE (I/D)
genotype exerts an effect on renal risk.
It has been pointed out that clinical and
pathophysiological studies, preferably in
genetically homogeneous populations, are of
crucial importance to turn the data generated by the new genetic techniques into
clinical benefit [125].
What studies would be needed ?
50
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