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March 1, 2016
Question 4a Screenshots
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Figure 2: Screenshot of the Schlogl with initial condition X(0) = 250
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Question 3b Report
In this report, we consider a simulation of the stochastics simulation algorithm using R, below are the
findings illustrated through graphs and some interpretations.
The graph below represents the R implementation for the simulation with copy numbers for substrate
being 200 and enzyme 100.
100.png
Observation:
The curve are not very smooth indication the level of noise within the system.
As time increases,the substrate numbers decrease to zero.
there is an initial decrease in the enzyme numbers,they then increases to form the final product.they
increases because they are used in the formation of the final product.
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copy number.png
Observation:
From the curve, we see that the level of noise within the system has reduce.
The is an observed The copy numbers of the reactants and products slight increases and slightly sharp
decreases respectively.
Observation:
From the observation, the two simulations (Stochastic BioNetGen model and The Stochastics Simulation
Algorithm) produce almost the same graphs.
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Figure 7: SSA
Figure 8: SSA