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Chemistry of Carbon
We used to describe organic chemistry as the
chemistry of living things.
Since the chemistry of living things is based on
carbon, the chemistry of carbon compounds has
come to be known as organic chemistry.
It now includes the study of carbon compounds
which are not found in living things and so is an
incredibly large branch of modern chemistry.
Im made of what???
Guess how many elements your
body is made up of?
25 elements make up all living
things
About 97% of your bodys mass is
made of just 4 elements: oxygen,
carbon, hydrogen, & nitrogen.
Two other major elements are
phosphorous & sulfur.
Why is life based on the element carbon?
They often have very strong smells or aromas, so they are called
aromatic compounds.
What makes carbon so special?
O Cl CH3 CH3
H Cl
C C CH C
H3C CH3
C C Cl C CH
H H CH CH3 CH3
CH
n-hexane
H H
H H H C H
H C H
H C H H C H
H H H H H H
H H H H H H H H H C C C C H
H C C C C H
H C C C C C H H C C C C C H H H H H H H
H H H H H H H H H H
H C H H C H
2-methyl-pentane 3-methyl-pentane H H
2,2-dimethylbutane 2,3-dimethylbutane
Properties of Alkanes
C3H6
cyclopropane R cyclopropyl-
C4H8
cyclobutane R cyclobutyl-
C5H10
cyclopentane R cyclopentyl-
C6H12
R
cyclohexane cyclohexyl-
The Nature of Organic Molecules
Organic chemistry is the study of carbon
compounds.
Carbon is tetravalent; it always forms four bonds.
Organic molecules have covalent bonds.
The Nature of Organic Molecules
The CCC bond angles in cyclopropane are 60, and the bond
angles in cyclobutane are 90, much less than the ideal 109.5
tetrahedral angle.
These compounds are less stable and more reactive than other
cycloalkanes.
Summary of Important Families of Organic Compounds
Summary of Important Families of Organic Compounds
Families of Organic Molecules: Functional Groups
The next four families have functional groups that contain
only single bonds and a carbon atom bonded to an
electronegative atom.
Alkyl halides have a carbonhalogen bond.
Alcohols have a carbonoxygen bond.
Ethers have two carbons bonded to the same oxygen.
Amines have a carbonnitrogen bond.
The next six families contain a carbonoxygen double bond:
aldehydes, ketones, carboxylic acids, anhydrides, esters, and
amides.
The remaining three families have functional groups that
contain sulfur: thioalcohols (known simply as thiols), sulfides,
and disulfides. These play an important role in protein
function.
Stereochemistry
The branch of chemistry concerned
with the three-dimensional
arrangement of atoms and
molecules and the effect of this on
chemical reactions.
Chemistry in three dimensions
Isomers are different compounds with the same
molecular formula.
Review of Isomerism
Isomers Compounds that have the same
molecular formula but do not have identical
structures (Different structural formula).
b)
constitutional
c)
stereoisomer
Constitutional Isomers and Stereoisomers
Compounds with same molecular formula
Definitions
Stereoisomers The compounds with the same
connectivity, different arrangement in space.
To maintain orbital overlap in the pi bond, C=C double bonds can not freely rotate.
Diastereomers: Geometric isomers (cis-trans)
Alkenes: Cis-trans isomers are not mirror images, so
these are diastereomers.
H H H CH3
C C C C
H3C CH3 H3C H
cis-2-butene trans-2-butene
achiral
CH3 H3C
Cl Br Cl
Br
b) CH3 CH3
chiral
Br Br
Cl Cl H
H
H Br H
Br
c) chiral
F F
Chiral or Achiral?
2-butanol Asymmetric
center
2-bromopropane
achiral
Isomers with one asymmetric center
Draw enantiomers
Enantiomers
Asparagine: mirror
plane
O OH HO O
C C
H2N C H H C NH2
CH2 CH2
C C
H2N O O NH2
enantiomers
Naming enantiomers:
Absolute Configuration (R) ("Rectus" Latin= "right").
and (S) "Sinister" Latin= "left) Configuration.
CH 2CH3 1 2
OH HO CH2CH3
H C = C (R)-2-butanol
CH3 CH3
3
CahnIngoldPrelog Priority System
CahnIngoldPrelog convention is the most widely accepted
system for naming the configurations of chirality centers.
1
CH3CH 2CH=CH H4
CH2CH 2CH2CH3
2
Counterclockwise
Counterclockwise (S)
(S)
Clockwise
3
(R)
1 CH 2CH3
OH
rotate
C 3 2
C 4
2 CH2CH 3 CH3CH 2CH2 H
CH3CH 2CH2
H OH
4 1
Configuration in Cyclic Compounds
Absolute Configuration Examples
Determine the absolute configuration of the following
compounds:
Properties of Enantiomers
Same boiling point, melting point, and density.
Diastereomers
Epimers
Meso Compounds
Tartaric acid has two chirality
centers and two diastereomeric
forms
One form is chiral and the other is
achiral, but both have two chirality
centers
An achiral compound with chirality
centers is called a meso
compound it has a plane of
symmetry
The two structures on the right in
the figure are identical so the
compound (2R, 3S) is achiral
Enantiomers Meso
Racemic Mixtures &The Resolution of Enantiomers
Inseparable
by normal
extraction
techniques
due to
identical
chemical
properties
Resolution of Enantiomers
Separable
by normal
extraction
techniques
due to
different
chemical
properties
Physical Properties of StereoisomersOptical Activity
[] = /(length x (g/ml));
94
Pasteurs Discovery of Enantiomers
Louis Pasteur discovered that sodium ammonium salts of tartaric
acid crystallize into right handed and left handed forms
The optical rotations of equal concentrations of these forms have
opposite optical rotations
The solutions contain mirror image isomers, called enantiomers
and they crystallized in distinctly different shapes such an event
is rare
Chemical Properties of Enantiomers
Two enantiomers have exactly the same chemical properties
except for their reaction with chiral non-racemic reagents.
Many drugs are chiral and often must react with a chiral
receptor or chiral enzyme to be effective. One enantiomer of
a drug may effectively treat a disease whereas its mirror
image may be ineffective or toxic.