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Ionisation of Functional Groups in Amino Acids

Amino Acid Functional pKa Dominant structure and Dominant structure and
Group* (approx.) charge when pH < pKa charge when pH > pKa
All BB amino 9.5

Positive Neutral
All BB carboxylic acid 2.0

Neutral Negative
Asp and Glu SC carboxylic acid 4.0

Neutral Negative
Cys SC thiol 8.0

Neutral Negative
Lys SC amino 10.5

Positive Neutral
Arg SC guanidinium 12.5

Positive Neutral
His SC imidazole 6.0

Positive Neutral
*BB = backbone group; SC = side chain group

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