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Detergents
Handbook & Selection
Guide to Detergents &
Detergent Removal
c
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• Protein Estimation Assays
• Lysis Buffers & Systems
• Apoptosis Assays
• Protein Fractionation Kits
• Cytotoxicity Assays
• Dialysis (Micro) System
• SAM Methyltransferase Assays
• Electrophoresis Clean-Up
• Protease Assays
• Concentration Systems
• Phosphatase Assays
• Contamination Removal
• Peroxide Assay
• Biotin Labeling
• Carrier Proteins
• Cell Surface Protein Labeling
• Peptide Coupling Systems
• Agarose Coupling Kits
• Antibody Purification Resins
• Fluorescent Dye Labeling Kits
• Antibody Fragmentation Kits
• Enzyme Labeling Systems
• Coated Plates
• Blocking Buffers • Homobifunctional
• Wash Buffers • Heterobifunctional
• Secondary Antibodies • Optimizer Systems
• Detection Reagents • Cross-Linking Systems
• Antibody Labeling Systems
• Apoptosis Assays
• DNA Isolation
• Cytotoxicity Assays
• Transformation & Screening
• SAM Methyltransferase Assays
• Polymerase Chain Reaction
• Protease Assays
• Agarose Electrophoresis
• Phosphatase Assays
• RNA Isolation
• Peroxide Assay
• Yeast Transformation
• ELISA
Table Of Contents
Introduction 2
Hydrophobicity.........................................................................2
How do detergents work?........................................................2
How do detergents solubilize proteins?.................................2
Critical Micelle Concentration (CMC)......................................3
Classification & Characterization..........................................4
Critical Micelle Concentration (CMC)......................................4
Kraft Point................................................................................4
Cloud Point...............................................................................4
Aggregation Number................................................................4
Hydrophile-Lipophile Balance (HLB).......................................4
Ionic Detergents 10
SDS...........................................................................................10
CTAB..........................................................................................10
Deoxycholate............................................................................10
Zwitterionic Detergents 11
CHAPS.......................................................................................11
CHAPSO....................................................................................11
Sulfobetaine 3-10 (SB 3-10)...................................................12
Sulfobetaine 3-12 (SB 3-12)...................................................12
Sulfobetaine 3-14 (SB 3-14)...................................................12
ASB-14 .....................................................................................12
ASB-16 .....................................................................................13
ASB-C8Ø ..................................................................................13
Non-Detergent Sulfobetaine..................................................13
NDSB 201................................................................................13
OrgoSol DetergentOUT™...........................................................17
DetergentOUT™ Tween®..........................................................17
Detergent Optimization..........................................................17
Optimizer blueBALLS™.............................................................17
Detergent Assays 18
Detergent Assay.....................................................................18
CMC-535™ Detergent Assay....................................................18
SDS Detection & Estimation...................................................18
Figure 1: The structure of the detergent SDS (Sodium Dodecyl Sulfate).
The amphipathic properties of the detergent molecules allows
them to exhibit unique properties in aqueous solutions. The polar
(hydrophilic) head groups interact with the hydrogen bonds of the
water molecules and the hydrophobic tails aggregate resulting
in highly organized spherical structures called micelles. At low
concentrations, the detergents exist as single molecules or small
aggregates and as the concentration increases micelles begin to
form. The concentration at which micelles begin to form is known
Figure 4: A Fluid -mosaic model of a biological membrane.
as the Critical Micelle Concentration (CMC).
The proteins are released from lipid bilayers by detergents as the
detergent micelles have similar properties as the lipid bilayer. The
integral membrane proteins embed themselves in the detergent
micelles protecting their hydrophobic domains from aggregation.
A schematic of how detergents solubilize membrane proteins
is shown below. At low detergent concentrations, less than the
detergent’s CMC, the detergent molecules insert themselves
in the lipid membrane and begin partioning the lipid bilayer. At
concentrations equal to, or higher than the detergent’s CMC, the lipid
bilayer becomes saturated with detergent molecules and the lipid
bilayer breaks apart. The resulting products are protein-detergent
complexes, where the detergent hydrophobic regions bind to the
protein hydrophobic domains protecting them from aggregations. In
Figure 2: A detergent micelle formed with SDS molecules in an aqueous
solution (left) or a non-aqueous solution (right). addition to these, detergent and detergent-lipid micelles are formed.
High CMC
+
determination. Blue colored Optimizer blueBALLS™ imitate membrane
proteins and solubilize when the critical micellar concentration is
reached, releasing a non-reactive blue color into the extraction buffer.
[Carbonyl] (µM)
600
equilibrium exist between an insoluble crystalline state, monomeric
detergent and detergent micelles. At low temperatures, detergents
form insoluble crystalline states that shift to detergent monomers 400
and finally detergent micelles with increasing temperatures.
The temperature at which the CMC concentration is reached is
known as the critical micellar temperature (CMT). In most cases, the 200
Cloud Point
0
Brij® 35 Nonidet® P-40 Tween® 20 Tween® 80 Triton® X-100 Triton® X-114
Substitute
The Cloud Point is another temperature related property that is
specific for non ionic detergents. As temperatures pass the CMT, the 80
Peroxide Contamination
non ionic detergents become cloudy and separate into a detergent-
70
rich and an aqueous layer, a process known as phase separation. Commercial
This temperature is known as the cloud point. 60 G-Biosciences
This property is used for the purification of integral membrane
[Peroxide] (µM)
proteins with Triton® X-114. The cloud point of Triton® X-114 is 23°C, 50
Aggregation Number 10
[Carbonyl] [Carbonyl]
450 18
450 72
[Peroxide]
400 16 [Peroxide]
[Carbonyl] (µM)
[Peroxide] (µM)
400 64
350 14
350 56
300 12
[Peroxide] (µM)
[Carbonyl] (µM)
300 48
250 10
250 40
200 8
150 6 200 32
100 4 150 24
50 2
100 16
0 0
G-Biosciences Commercial 50 8
SDS
————————————————————————————
Sodium dodecyl sulfate
CTAB
————————————————————————————
Hexadecyltrimethylammonium bromide
CHAPS
————————————————————————————
3-[(3-Cholamidopropyl)dimethylammonio]-1-
propanesulfonate
ASB-C8Ø
————————————————————————————
4-n-Octylbenzoylamido-propyl-dimethylammonio
sulfobetaine
1
Critical Micellular Concentration (CMC) determined at 20-25°C. CMC is the concentration at which micelles begin to form.
2
Aggregation number is the average number of monomers in a micelle.
3
Hydrophile-Lipophile Balance (HLB) defines the hydrophilic character of a detergent.
4
Data not available
Triton is a registered trademark of Union Carbide Corp; Tween is a registered trademark of Uniqema, a business unit of ICI Americas, Inc.;
Nonidet is a registered trademark of Shell Chemicals; Brij is a registered trademark of ICI Americas, Inc.
G-Biosciences offers a range of detergent removal systems that use either a rapid column based system or a precipitation system.
Our products are designed to remove a wide variety of detergents, including SDS, Tween® 20, Triton® X-100, Triton® X-114, Nonidet® P-40,
CTAB, CHAPS, deoxycholate and Lubrol®.
0.9
capacity for detergents, i.e. 6mg SDS and 14mg Triton® X-100 by 0.3
30 0.1
DetergentOUT™ GBS10 Treated
Untreated 0
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23
25
Fraction #
20
CITED REFERENCES
0
No Detergent CHAPS (0.5%) Nonidet® P-40 Triton® X-114 SDS (2%)
1. Srivastasva, O.P. et al (2017) Biochemistry and Biophysics Report. http://dx.doi.org/10.1016/j.
(1%) (0.2%) bbrep.2017.01.011
Figure 34: DetergentOUT™ GBS10 removes detergent & allows detection 2. Min, L. et al (2015) Electrophoresis. DOI: 10.1002/elps.201400579
3. Valente, K. N. et al (2014) Biotechnol Bioeng. DOI: 10.1002/bit.25515
of peptide fragments by mass spectrometry. 500µg phosphorylase B 4. Hou, S. et al (2013) Methods. 61:269
was digested in solution & then the indicated amount of detergent was 5. Higgins, D. et al (2005) Anitmicrob. Agents Chemother. 49:1127
added. Samples were treated with DetergentOUT™ GBS10. Number of 6. Hashii, N. et al (2005) Proteomics. 5:4665
peptide spectra were determined as per the protocol of Alvarez, S. et al. Sample Resin
Cat. No. Description Size
A. No detergent, No DetergentOUT™ GBS10 B. 0.5% CHAPS, DetergentOUT™ GBS10 treated Size (µl) (µl)
786-154 DetergentOUT™ GBS10-125 10-30 125 10 columns
786-155 DetergentOUT™ GBS10-800 30-200 800 10 columns
786-156 DetergentOUT™ GBS10-3000 200-750 3,000 10 columns
786-157 DetergentOUT™ GBS10-5000 500-1,250 5,000 10 columns
DetergentOUT™ GBS10 Spin
786-998 30-200 800 2 plates
Plates
786-159 DetergentOUT GBS10 Resin
™
- - 10ml resin
C. 0.5% CHAPS, No DetergentOUT GBS10 ™
Cytochrome C
E.coli Lysate
% Removed
BSA
Detergent
Triton X-100, 2% >99 >90 >91 >92 >93
0.8
0.6
0.4
0.2
0
Before After Before After
SDS Triton® X-100
5000
1200
uorescence (RFU)
uorescence (RFU)
1000 4000
800
3000
600
Flu
Flu
2000
400
1000
200
0 0
0 0.002 0.004 0.006 0.008 0.01 0.012 0.014 0.016 0 0.002 0.004 0.006 0.008 0.01
[Brij 35] (%) [Brij 58] (%)
16000
SDS 5000
Triton® X-100
4500
14000
4000
12000
3500
uorescence (RFU)
uorescence (RFU)
10000
3000
8000 2500
2000
6000
Flu
Flu
1500
4000
1000
2000
500
0 0
0 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.1 0 0.01 0.02 0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.1
[SDS] (%) [Triton X-100] (%)
3000
Tween® 20 6000
Tween® 80
2500 5000
uorescence (RFU)
2000 4000
Fluorescene (RFU)
1500 3000
Flu
1000 2000
500 1000
0 0
0 0.002 0.004 0.006 0.008 0.01 0 0.001 0.002 0.003 0.004 0.005
[Tween 20] (%) [Tween 80] (%)
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