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Identification Of Histopathology Grading Of Breast

Cancer Using Artificial Neural Network(August 2017)



character of invasion (infiltration) to the
Abstract—Breast cancer is the leading type surrounding tissue and is characterized by the
of malignant tumor observed in women and tendency of experiencing extensive metastases
effective treatment depends on its early elsewhere. In general, this tumor is
diagnosis. The gold standard of breast cancer adenocarcinoma and is believed to originate from
is histopathologic examination of cancer cells. the epithelium of the breast parenchyma,
The determination of the grading in breast especially cells derived from the terminalis
cancer is determined by three factors: duktus lobular unite (TDLU).
pleomorphic, tubular formation and cell The prognosis of breast cancer is associated
mitosis. In this paper refer to pleumorfic and with a wide range of clinical conditions and
tubular formation by Breast cell histopatologi pathological factors. Grade histology is one of
images. The proposed system consist of four the important factors in determining the
major steps : preprocessing, segmentation,
prognosis of the patient. There are two grading
feature extraction and classification. In
systems widely used in recent years, the Bloom-
preprocessing grayscale and segmentation are
applicated. Feature extraction using Gray Richardson system and the Black system. The
level Cooccurence Matrix (GLCM) and the 4 three histological factors studied hace been
features are contrast, energy, entropy and presented elsewhere(Bloom, 1950) and breifly as
homogeneity. The final step is identification follwors:
using Backpropagation. Some of important a. Degree of structural differentation as shown
parameters will be variated in this process by the presence of tubular arragement of the
such as learning rate and the number of node cells.
in hidden layer. The research result suggest b.Variantion in size, shape and staining of the
that extraction feature in 4 feature is the best nuclei
accuracy for classifying mammogram based c. Frequency of hyperchromatic and mitotic
on classes 81,1% and especially in accuracy is figures
100%.
Index key—Histopatologic breast cancer,
kmeans, GLCM, Backpropagation

BINTRODUCTION

reast cancer (breast cancer) is one of the highest


causes of human deaths besides cervical cancer
(servics). This case can occur in men and women.
Breast cancer is somewhat the most common
disease affecting women, although men also have
the possibility of experiencing this disease with a
ratio of 1 in 1000. Breast cancer is a disease
where there is excessive growth or uncontrolled
development of breast tissue (tissue) Chintya,
2009).
In Indonesia, the most common type of
breast cancer histopalogy is Invasif Ductal
Carsinoma Mamae. This type is a group of
malignant epithelial tumors that have the
Fig. 1. Image sel (J. Biomed. Eng. 1988, Vol. where this data is intelligent system arficial
10, October) neural netwok. While for training data used for
network training.
Hystologi is the study of the microscopic
anatomy of cell and tissues of organisme. Nuclei Segmentation
Hystological analysisis performed by examining Automatically segment nuclei in breast
a thin slice(section) of tisuue under a light or cancer histopatological image is a hybrid active
electron microscope. Hystopathology, the contour which combined boundary and region
information.First step, normalization methodis
microscopic study of biopsies to locate and
employed to reduce the color variations in tissue
classify disease, has roots in both clinical
appearance due to variability in tissue
medicine and in basic science. In histology image
preparation. In this study segementasi image
analysis for cancer diagnosis, histopathologis using K means method. K-Means is an algorithm
visually examine the regularities of cell shapes Clustering Repeatedly. The K-Means algorithm
and tisuue distribution, decide whether tissue begins with a random selection of K, K here is
regiobs are cancerous and determine the the number of clusters Which you want to
malignancy level. establish. Then set the values of K at random, for
While histology image interpretation a while the value becomes the center of Cluster
continues to be the standard for cancer Or commonly called the centroid, mean or
diagnosis, current computer technology towards "means". Calculate the distance of each existing
this the task falls behind clinical need. Manual data on each centroid using the Euclidian formula
analysis of histology tissues is still the primary until it finds the closest distance from each data
diagnosis method, and depends heavily on the with the centroid. Classify each data based on its
expertise and experience of histopathologist. proximity to the centroid. K means clustering
Such manual intervention has the disvantages of groups imange points into K cluster by
being very time consuming and being difficult to minimizing the objective function.
grade in reproducible manner;empirically, it is
known that there are substantial intra-and-inter
observation variations among experts. The large
and impratical demand on experts time to
interpret the images are making computer
Where Ii is the intensity of image point xi in the
assisted diagnosis(CAD) systems increasingly class sk
important. Compared to manual
analysis,computer based system may provide Feature Extraction
rapid and consistent cancer detection and grading After image segmentation, image features
result. In this research, into two sequential are extracted from the regions of interest to detect
subsystem tissue preparation and image and grade potential deseases. In this case, we
production following by image processing and using Gray Level Co-Occurance Matrix. The
analysis. GLCM method is included in statistical methods
where in statistical calculations use the gray
degree distribution (histogram) by measuring the
contrast, granularity, and roughness of a region of
the neighboring relationships between pixels
MATERIAL within the image This statistical paradigm is of
unlimited use, making it suitable for unstructured
We got the data form Pathology Anatomy of natural textures of sub patterns and set rules
RSUD Soetomo. There are 150 patient data with (microstructures).
different grade classification. The size image 804 Gray-Level Co-occurrence matrix is the
x 565. The dataset comprised 150 tisuee images most widely used method for texture analysis.
with 50 low, 50 intermediate, 50 hight grade This method was introduced by Haralick in 1973
which is part of a NASA-supported project that is
breast cancers. There are two data;primary data
precisely NASA Goddard Space Flight Center.
and training data. Homedata is training data
Haralick uses images from NASA ERTS to positive(TP), False positif(FP), True negatif(FN),
classify with an accuracy of over 80%. False Negatif (FN).
The GLCM matrix is calculated from the
pixel value paired and has a certain intensity EXPERIMENTAL DESIGN
value. Let d be the distance between two pixels
(x1, y1) and (x2, y2) and Ѳ tetha is defined as the CAD system are increasingly employed in
angle between the two, the GLCM matrix is the histopatology with the objective of instant and
spatial distribution of Pd Ѳ (i, j). consistent disesase identification analisis. In the
1. Homogeneiti experiment, the dataset comprised 150
Indicates the homogeneity of the intensity histopatologi preparation image consists of 56
variation in the image. Homogeneiti Equation: grade 1, 70 grade 2, 40 grade 3. The rest of 120
cases use training set and 30 testing data set. The
proposed segmentation method is employed on
........................................... the captured BCH imaged by MATLAB. The
... (1) proposed method is compared with comparable
2. Energy methods from the published literature.
Energy is a GLCM feature used to measure
concentration of intensity pairs on GLCM Fiture extraction
matrix, and is defined as follows: Histologi Segmentation
GLCM
image Homogieniti,
K-means
energy, entrophy,
contrass
.....................................
...... (2)
3. Contrast
Identification
Contrast to improve image contrast : . The segmentation result with K means
grading results
clustering are shown in Fig. 2
.........................................
.......(3)
4. Entropy
Shows the size of the shape irregularity:
�9 = −Ʃ� Σ� �(�, �)log (�(�,
�))....................................(4)

Backpropagation is one of the artificial Fiture 1. K means clustering segmentation


neural network methods used to determine the
grading of breast cancer. Each backpropagation K means clustering groups image point into
network unit located in the input layer is K cluster by minimizing the objective function.
connected to each unit in the hidden layer The image points in a d-dimensional by certain
connected to each unit in the output layer. When probability density function where dense
the network is given an input pattern as a training regionscorrespond to the local maxima (modes)
pattern, then the pattern goes to the hidden layer of the underlying distribution. Image point
units for subsequent output will give response as associated to the same mode (by a greadient
the output of artificial neural network. When the ascent procedure) are grouped into one cluster.
output is not as expected, the output will be After image segmentation, image features
backwarded in the hidden layer then from the are extracted from gray level co-occurance
hidden layer to the input layer. matrixs. Traditional features with object size and
After the cancer classification or grading, we can shape,topological or graph based features
evaluate the performance of CAD system by intensity and color features, texture
comparing their result with ground truth. The feature(homogeneiti, energy, entrophy and
grading result on the testing subset can be contrass). This is shown in the table 1,
classified into ine of four categories: true
No. GLCM
Kode Homoge
image nitas Energi Entrophy

1 A1 0.511922 0.57663 1,72944E+05


2 A11 0.527894 0.553129 1,51681E+05
3 A12 0.551763 0.586215 1,49035E+05
4 A13 0.53804 0.610018 1,51737E+05

In this study more emphasis on the calculation of


pleumorfix and tubular cells. Input ANN comes
from the output of fiture extraction that the
output is a number. In this paper, the image are
categorized with three main type, namely,
a. Grade 1,
.

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IV. SOME COMMON MISTAKES


The word “data” is plural, not singular. The
subscript for the permeability of vacuum µ 0 is
zero, not a lowercase letter “o.” The term for
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adjective is “remanent”; do not write “remnance”
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1) TABLE I
UNITS FOR MAGNETIC PROPERTIES
Conversion from Gaussian and
Symbol Quantity
CGS EMU to SI a
 magnetic flux 1 Mx  108 Wb = 108 V·s
B magnetic flux density, 1 G  104 T = 104 Wb/m2
magnetic induction
H magnetic field strength 1 Oe  103/(4) A/m
m magnetic moment 1 erg/G = 1 emu
 103 A·m2 = 103 J/T
M magnetization 1 erg/(G·cm3) = 1 emu/cm3
 103 A/m
4M magnetization 1 G  103/(4) A/m
 specific magnetization 1 erg/(G·g) = 1 emu/g  1 A·m2/kg
j magnetic dipole 1 erg/G = 1 emu
moment  4 1010 Wb·m
J magnetic polarization 1 erg/(G·cm3) = 1 emu/cm3
 4 104 T
, susceptibility 1  4
 mass susceptibility 1 cm3/g  4 103 m3/kg
Fig. 1. Magnetization as a function of applied field. Note that “Fig.” is  permeability 1  4 107 H/m
abbreviated. There is a period after the figure number, followed by two = 4 107 Wb/(A·m)
spaces. It is good practice to explain the significance of the figure in the r relative permeability r
caption. w, W energy density 1 erg/cm3 101 J/m3
N, D demagnetizing factor 1  1/(4)
Vertical lines are optional in tables. Statements that serve as captions for
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V. GUIDELINES FOR GRAPHICS PREPARATION a
Gaussian units are the same as cg emu for magnetostatics; Mx =
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All listed references must be cited in text at
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It is recommended that footnotes be avoided (except for
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Indecipherable English is a valid reason for professional conference, may not be
immediate rejection. If in the opinions of the appropriate for publication.
reviewers the ideas are not clearly presented, the
paper will be rejected as a result of the review.
TMI allows only one major review. There is a REFERENCES
service available that can help improve your Basic format for books:
English writing for a fee, and the link to that [1] J. K. Author, “Title of chapter in the book,” in Title of
service can be found at His Published Book, xth ed. City of Publisher,
http://www.ieee.org/web/publications/authors/transjnl/i Country if not
[2] USA: Abbrev. of Publisher, year, ch. x, sec. x, pp. xxx–
ndex.html. xxx.
Examples:
[3] G.O.Young,“Syntheticstructureofindustrial plastics,”in
X.PUBLICATION PRINCIPLES Plastics, 2nd ed., vol. 3, J. Peters, Ed. New York:
McGraw-Hill,1964,pp.15–64.
IEEE TMI publishes scholarly articles of [4] W.-K.Chen,LinearNetworksandSystems.Belmont,
archival value as well as tutorial expositions and CA:Wadsworth, 1993, pp. 123–135.
critical reviews of classical subjects and topics of
current interest that have been approved by the Basic format for periodicals:
[5] J. K. Author, “Name of paper,” Abbrev. Title of
editor-in-chief prior to first submission. Periodical, vol. x, no. x, pp. xxx-xxx, Abbrev.
Authors should consider the following points: Month, year.
1) Technical papers submitted for publication Examples:
must advance the state of knowledge and [6] J. U. Duncombe, “Infrared navigation—Part I: An
assessment
must cite relevant prior work. of feasibility,” IEEE Trans. Electron Devices, vol. ED-
2) The length of a submitted paper should be 11, no. 1, pp. 34–39, Jan. 1959.
commensurate with the importance, or [7] E. P. Wigner, “Theory of traveling-wave optical
laser,”Phys. Rev.,
appropriate to the complexity, of the work. vol. 134, pp. A635–A646, Dec. 1965.
For example, an obvious extension of [8] E. H. Miller, “A note on reflector arrays,” IEEE
previously published work might not be Trans.Antennas Propagat., to be published.
appropriate for publication or might be
adequately treated in just a few pages. Basic format for reports:
[9] J. K. Author, “Title of report,” Abbrev. Name of Co.,
3) Authors must convince both peer reviewers City of Co., Abbrev. State, Rep. xxx, year.
and the editors of the scientific and technical Examples:
merit of a paper; the standards of proof are [10] E. E. Reber, R. L. Michell, and C. J. Carter, “Oxygen
higher when extraordinary or unexpected absorption in the earth’s atmosphere,” Aerospace Corp.,
LosAngeles, CA, Tech. Rep. TR-0200 (4230-46)-3,
results are reported. Nov. 1988.
4) Because replication is required for scientific [11] J. H. Davis and J. R. Cogdell, “Calibration program for
progress, papers submitted for publication the 16-foot antenna,” Elect. Eng. Res. Lab., Univ. Texas,
Austin, Tech. Memo. NGL-006-69-3, Nov. 15, 1987.
must provide sufficient information to allow
readers to perform similar experiments or
Basic format for handbooks:
calculations and use the reported results.
[12] Name of Manual/Handbook, x ed., Abbrev. Name HUMANIST@NYVM.ORGMessage:
of Co., City of Co., Abbrev. State, year, pp. xxx-xxx. getGENEALOGY REPORT
Examples:
[13] Transmission Systems for Communications, Basic format for patents (when
3rd ed., Western Electric Co., Winston-Salem, NC, available online):
1985, pp. 44–60. [24] Name of the invention, by inventor’s name. (year,
[14] Motorola Semiconductor Data Manual, month day). Patent Number [Type of medium].
Motorola Semiconductor Products Inc., Phoenix, AZ, Available:site/path/file
1989. Example:
[25] Musical toothbrush with adjustable neck and mirror, by
Basic format for books (when available online): L.M.R. Brooks. (1992, May 19). Patent D 326 189
[15] Author.(year,monthday).Title.(edition) [Online]. Available: NEXIS Library: LEXPAT File:
[Typeofmedium].volume (issue).Available: site/path/file DESIGN
Example:
[16] J. Jones.(1991, May 10). Networks.(2nded.)[Online]. Basic format for conference proceedings
Available:http://www.atm.com (published):
[26] J. K. Author, “Title of paper,” in Abbreviated Name
Basic format for journals (when available of Conf., City of Conf., Abbrev. State (if given), year,
online): pp. xxxxxx.
[17] Author. (year, month). Title.Journal.[Typeof Example:
medium].volume (issue), pages. Available: site/path/file [27] D. B. Payne and J. R. Stern, “Wavelength-switched pas-
Example: sivelycoupledsingle-mode opticalnetwork,”in Proc.
[18] R. J. Vidmar. (1992, Aug.). On the use of atmospheric IOOC-ECOC,1985,
plasmasaselectromagneticreflectors. IEEETrans. pp.585–590.
PlasmaSci.[Online].21(3),pp. 876–880. Example for paperspresentedat
Available:http://www.halcyon.com/pub/journals/21ps03
-vidmar conferences(unpublished):
[28] D.EbehardandE.Voges,“Digitalsinglesidebanddetectionf
orinterferometricsensors,”presentedat the2ndInt.
Basic format for paperspresented at conferences Conf.OpticalFiberSensors,Stuttgart,Germany,Jan.2-5,
(when available online): 1984.
[19] Author. (year,month). Title. Presented at Conference
title. [Type of Medium]. Available: site/path/file Basic formatfor patents:
[29] J. K. Author, “Title of patent,” U.S. Patent x xxx xxx,
Example: Abbrev. Month, day, year.
[20] PROCESS Corp., MA. Intranets: Internet technologies
deployedbehindthefirewall forcorporateproductivity. Example:
Presentedat [30] G. Brandli and M. Dick, “Alternatingcurrent fed power
INET96AnnualMeeting. supply,”
[Online].Available:http://home.process.com/Intranets/w U.S.Patent 4 084 217,Nov.4,1978.
p2.htp
Basic formatfor theses (M.S.) and
Basic format for reports and handbooks (when dissertations (Ph.D.):
available online): [31] J. K. Author, “Title of thesis,” M.S. thesis, Abbrev.
[21] Author. (year, month). Title. Dept., Abbrev. Univ., City of Univ., Abbrev. State, year.
Company.City,StateorCountry. [32] J. K. Author, “Title of dissertation,” Ph.D. dissertation,
[TypeofMedium].Available: site/path/file Abbrev. Dept., Abbrev. Univ., City of Univ., Abbrev.
Example: State,year.
[22] S . L . Ta l le e n . ( 1 9 9 6, A p r.) . T h e I ntra ne t Examples:
A r c h i-te c tu r e : Man a g in g infor ma tio n in the n ew [33] J. O. Williams, “Narrow-band analyzer,” Ph.D.
paradigm.AmdahlCorp., CA. [Online]. dissertation, Dept. Elect. Eng., Harvard Univ.,
Available:http://www.amdahl.com/doc/products/bsg/intr Cambridge, MA,1993.
a/infra/html [34] N. Kawasaki, “Parametric study of thermal and
chemical nonequilibrium nozzle flow,” M.S. thesis,
Basic format for computerprograms Dept. Electron.Eng., Osaka Univ., Osaka, Japan, 1993.
andelectronicdocuments(when available
online):ISOrecommendsthatcapitalizationfollowt Basic format for the most common
heacceptedpracticefor thelanguage orscript in types of unpublished references:
whichtheinformation isgiven. [35] J. K. Author, private communication, Abbrev. Month,
year.
Example: [36] J. K. Author, “Title of paper,” unpublished.
[23] A.Harriman. [37] J. K. Author, “Title of paper,” to be published.
(1993,June).Compendiumofgenealogicalsoftware.
Humanist.[Online].Availablee-mail: Examples:
[38] A. Harrison, private communication, May 1995.
[39] B. Smith, “An approach to graphs of linear forms,”
unpublished.
[40] A. Brahms, “Representation error for real numbers in
binary computer arithmetic,” IEEE Computer
GroupRepository, Paper R-67-85.

Basic format for standards:


[41] Title of Standard, Standard number, date.
Examples:
[42] IEEE Criteria for Class IE Electric Systems, IEEE
Standard 308, 1969.
[43] Letter Symbols for Quantities, ANSI Standard Y10.5-
1968.

Note   that   author   photographs


andbiographies are not accepted in IEEE
TMI papers.  This policy can vary among
the different transactions.  

This template has been modified from the IEEE Template


for
Transactions specifically for TMI by the TMI Editorial
Office, February 2016.

This paragraph of the first footnote will contain the date on which you submitted your paper for review. It will also contain
support information, including sponsor and financial support acknowledgment. For example, “This work was supported in
part by the U.S. Department of Commerce under Grant BS123456”.
The next few paragraphs should contain the authors’ current affiliations, including current address and e-mail. For example,
F. A. Author is with the National Institute of Standards and Technology, Boulder, CO 80305 USA (e-mail: author@
boulder.nist.gov).
S. B. Author, Jr., was with Rice University, Houston, TX 77005 USA. He is now with the Department of Physics, Colorado
State University, Fort Collins, CO 80523 USA (e-mail: author@lamar.colostate.edu).
T. C. Author is with the Electrical Engineering Department, University of Colorado, Boulder, CO 80309 USA, on leave
from the National Research Institute for Metals, Tsukuba, Japan (e-mail: author@nrim.go.jp).

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